Genomic tRNA Database: Candidatus Methanoregula boonei 6A8

tRNAscan-SE Analysis of Candidatus Methanoregula boonei 6A8

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>> tRNAs by Isotype

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>> Secondary Structures

>> tRNA Alignments

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>> Analysis Notes

>> UCSC Genome Browser

Structurally Aligned tRNAs (by Isotype & Anticodon)

Structural alignments are generated by aligning tRNA sequences against domain-specific tRNA covariance models with the use of COVE.

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTGGTGGTAAAGTGGTA.TTACGCTCCCTTGGCATGGGAGAG...........GcCGCGGGTTCAATTCCCGCCCAGTCCA... chr.trna40-AlaGGC Sc: 64.70  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCGTAGATCAGGGGTA.GATCGCTACGTTCGCAACGTAGAG...........GcCGCGGGTTCAAATCCCGCCGGGTCCA... chr.trna18-AlaCGC Sc: 71.36  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCGTAGATCAGGGGTA.GATCGTCACGTTTGCAACGTGAAG...........GcCACGGGTTCGAATCCCGTCGAGTCCA... chr.trna19-AlaTGC Sc: 68.94  



Arg tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCCCGGTGGGGTAGT..GGAcA.TCCTAGAAGCCTGCGGAGCTTTTG...........A.CCCGGGTTCAAGTCCCGGCCGGGGCG... chr.trna37-ArgGCG Sc: 58.02  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTCGGTAGGGTAGT..GGAcA.TCCTAGAAGCCTCCGGAGCTTTTG...........A.CCCGGGTTCAAGTCCCGGCCGAGGCG... chr.trna8-ArgCCG Sc: 60.82  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATCCATGGGGTAGA..GGAtA.TCCTCTTGGGCTTCGAACCCAAGG...........A.CGCGGGTTCGATTCCCGCTGGGTCCG... chr.trna42-ArgTCG Sc: 51.59  

>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGAGTGGCTTAGTCcGGAtA.GAGCGTTAGCCTCCTAAGCTAATG...........GtCGGGGGTTCAAATCCCCCCTCGCCCG... chr.trna30-ArgCCT Sc: 76.73  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTGTGGCTTAGCTtGGAcA.TAGCGCCGGGCTTCTAACCCGGAT...........GtCGGGGGTTCAAATCCCTCCAAGCCCG... chr.trna13-ArgTCT Sc: 81.08  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCATAACTCAGTTGGTAGAGTGGCTGGCTGTTAACCAGCAT...........GtCACAGGTTCGAGTCCTGTTGGCGGCG... chr.trna2-AsnGTT Sc: 66.59  



Asp tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCCAGGTAGTGTAGCGGCctA.TCATGATTGCCTGTCACGCAATCG...........ACTCGGATTCGAATTCCGACCTGGGCG... chr.trna32-AspGTC Sc: 61.40  



Cys tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCAAGGTGGCGGAGCGGC.C.ACGCGGTTGACTGCAGATCAACTA...........CaCTCCGGTTCAAATCCGGACCTTGGCT... chr.trna24-CysGCA Sc: 51.27  
GCCGGTGTGGCAGAGCGGTtA.ATGCCTTCGCCTGCAGAGCGAATG...........TcTGGGGGTCCGACTCCCTCCGCCGGCG... chr.trna16-CysGCA Sc: 44.43  
GCCAGGATGGCGGAAAGGC.T.ACGCGGCTGACTGCAGATCAGCGT...........A.TCCCGGTTCGATTCCGGGTCCTGGCT... chr.trna28-CysGCA Sc: 38.05  
GCCAGGATGGCGGAAAGGC.T.ACGCGGCTGACTGCAGATCAGCGT...........A.TCCCGGTTCGATTCCGGGTCCTGGCT... chr.trna27-CysGCA Sc: 38.05  



Gln tRNAs


>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
AGCCCGGTAGTGTAGCGGTcaA.TCATGCGAGACTCTGGATCTCGCG...........ACAGCAGTTCGAATCTGCTCCGGGCTA... chr.trna43-GlnCTG Sc: 61.70  

>>>>>>>..>>>............<<<.>.>>>.......<<<.<...............>>>>>.......<<<<<<<<<<<<....
ACCCCCGTAGTGTAGCGGTcaA.TCATGCAGGACTTTGGATCCGGCG...........ACACCAGTTCGAATCTGGTCGGGGGTA... chr.trna4-GlnTTG Sc: 64.77  



Glu tRNAs


>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTGCTATAGTGTAGACcGGCcaATCATGCGAGCCTCTCACGCTCGCG...........ACAGGGGTTCAAATCCCCTTAGCAGCA... chr.trna12-GluCTC Sc: 63.30  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTGCTATAGTGTAGACcGGCcaATCATGCGGGCCTTTCACGCCCGCG...........ACTGGGGTTCAAATCCCCATAGCAGCA... chr.trna10-GluTTC Sc: 66.48  



Gly tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCGCCGATAGTGTAGTGGTtA.TCACTAGGCGTTGCCAACGCCTAA...........ACTCGGGTTCGAGTCCCGATCGGCGCA... chr.trna6-GlyGCC Sc: 62.20  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCGATAGTAGTCTAGCGGC.A.GGACAGGAGCTTCCCAAGCTTCTA...........ACCCGGGTTCGATCCCCGGCTATCGCA... chr.trna15-GlyCCC Sc: 53.81  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCATCGATGGTCTAGAGGT.A.TGACTTAGGCCTTCCAAGCCTATA...........GCCCGGGTTCGATTCCCGGTCGATGCA... chr.trna46-GlyTCC Sc: 64.00  



His tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCCAGGGTAGGGTAGTCtGGTtATCCTAAGGGGCTGTGGATCCCTCG...........ACCCGGGTTCAAATCTCGGCCCTGGCC... chr.trna21-HisGTG Sc: 61.29  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCCGTAGCATAGCCcGGTGGTGCGCCCGGCTGATAACCGGGAG...........GtCATGCGTTCGAATCGCATCGGGCCCA... chr.trna45-IleGAT Sc: 74.52  




Leu tRNAs



>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<....>>>>.......<<<<..<<<<<<<....
GCGAGGGTAGCCAAGCCaGGTcaA.AGGCGCTAGGTTGAGGGCCTAGTCTCGTAG....GAGTtCTTGGGTTCGAATCCCAT.CCCTCGCA... chr.trna7-LeuGAG Sc: 60.88  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<....>>>>.......<<<<..<<<<<<<....
GCGAGGGTAGCCAAGCCaGGTcaA.CGGCGCCAGGTTCAGGGCCTGGTCTCGCAG....GAGTtCTTGGGTTCGAATCCCAT.CCCTCGCA... chr.trna11-LeuCAG Sc: 60.46  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGAGGATCGCCGAGCTtGGTcaA.AGGCGCTGGATTTAGGGTCCAGTCCCGCAG....GGGTtCGCCGGTTCGAATCCGGC.TCCTCGCA... chr.trna35-LeuTAG Sc: 65.63  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGAGAATATCTAAGT..GGCcaA.CAGAGGCGGACTCAAGATCCGTTCCCGAAG....GGGTtCGCAGGTTCGACTCCTGC.TTCTCGCA... chr.trna1-LeuCAA Sc: 48.33  

>>>>>>>..>>>..............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGAGGGTACGAAAGT..GGCcaA.CTCGGCTGGACTTAAGATCCAGTTCCGCAG....GGATtCATGGGTTCGACTCCCAT.CCCTCGCA... chr.trna38-LeuTAA Sc: 52.19  



Lys tRNAs


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTTAGTTcGGCATAGCGGCGGACTCTTAATCCGCAG...........GtCAAGGGTTCAAATCCCTTCAGGCCCG... chr.trna17-LysCTT Sc: 77.39  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTTCGTAGCTCAGTTcGGTAGAGCGCCTGGCTTTTAACCAGGTG...........GtCGGGGGTTCAAATCCCTCCGGGCCCG... chr.trna29-LysTTT Sc: 81.50  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>...............................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAGTCcGGTtAGAGCGCCCGGCTCATA........................................................ACCGGGCG...........GtCATGCGTTCGAATCGCATCAGGCCCA... chr.trna3-MetCAT Sc: 79.52  
>>>>>>>..>>>............<<<.>>>>>...............................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
AGCGAGGTAGGGTAGTCaGGAtATCCCGACGGGCTCATA........................................................ACCCGTAG...........AtCGATGGTTCAAATCCATCCCTCGCTA... chr.trna48-MetCAT Sc: 72.22  
>>>>>>>..>>>>..........<<<<.>>>>>...............................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGCGGTGGCCTAGCT.GGTtAGGGCGCCAGACTCATAgggttttattggagcgcaaaaacaatccggtttttgcgcgataagatacctgggacATCTGGAG...........AtCGTGGGATCGTAACCCACTCGCAGCA... chr.trna33-MetCAT Sc: 49.05  



Phe tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCTAGTAGCTCAGACtGGGAGAGCGCCAGACTGAAGATCTGGTT...........GtCCCCGGTTCAAATCCGGGCTGGGGCA... chr.trna39-PheGAA Sc: 78.50  



Pro tRNAs



>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGGGTAGCCtGGCc.ATCCTAGGAGACTGGGGGTCTTCTG...........ACTCGCGTTCAAATCGCGATGGCCCCA... chr.trna14-ProGGG Sc: 59.51  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGGGTCGTGGGGTAGCCtGGActATCCTATTGCGTTCGGGACGCAGTG...........ACCTGAGTTCGAATCTCAGCGACCCCA... chr.trna23-ProCGG Sc: 64.53  

>>>>>>>..>>>.............<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGGGTAGTAGGGTAGCCtGGTccATCCTAGAGCGTTTGGGACGCTTTG...........ACGGCGGTTCGAATCCGCCCTACCCCA... chr.trna5-ProTGG Sc: 64.28  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>.............<<<<...>>>>>.......<<<<<<<<<<<<....
GCTGAGGTAGTCTAGC..GGTA.GGGCGCAGGCCTGGAAAGCCTGTGGTGC.GAAA........GTGCCtCGGGGGTTCAATTCCCCCCCTCAGCG... chr.trna44-SerGGA Sc: 57.91  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>...............<<<...>>>>>.......<<<<<<<<<<<<....
GCCGAGGTAGTCTAGCCcGGGA.AGGCGGTAGCCTCGAAAGCTACTGGCG..CTTCg........CGCCtCGGGAGTTCAAATCTCCCCCTCGGCG... chr.trna20-SerCGA Sc: 56.26  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>.............<<<<...>>>>>.......<<<<<<<<<<<<....
GCCGGGGTAGTCTAGTCcGGTA.AGGCGGTGGCCTTGAAAGCCACTGGTGCC..........CtGCACCtCAAGAGTTCAAATCTCTTCCCCGGCG... chr.trna9-SerTGA Sc: 56.62  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>...............<<<...>>>>>.......<<<<<<<<<<<<....
GTTGAGGTAGCCAAGCCtGGTA.TGGCGCAGGTTTGCTAAACCTGTGTCC..CAAAa........GGACtCGAGGGTTCAAATCCCTCCCTCAGCG... chr.trna22-SerGCT Sc: 60.31  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTAAGTGACTCAGCCcGGCA.GAGTACCTCCTTGGTAAGGAGGAA...........GtCGCGAGTTCAAATCTCGCCTTAGGCT... chr.trna36-ThrGGT Sc: 65.20  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCCGTGGCTTAGC..GGCA.TAGCGGCTGATTCGTAATCAGCAG...........GtCGAGGGTTCAAGTCCCTCCGGCGGCT... chr.trna26-ThrCGT Sc: 76.94  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTCAGTGGCTTAGCT.GGCA.GAGCGGCTGACTTGTAATCAGCAG...........GtCCCGTGTTCAAATCACGGCTGAGGCT... chr.trna34-ThrTGT Sc: 75.12  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.........................................................................................................<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTTGTGGCCAAGCCcGGAATGGCGACGGGCTCCAGcggtctttgcgttcaaaaaacgtgctcgcagatgatgaacaatgggtctgctgaaattgatgatgacccgttggagcactgatgcgcatgtcggagagACCCGTCG...........AtCGTGAGTTCAAATCTCACCAACCCCA... chr.trna49-TrpCCA Sc: 49.68  



Tyr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......................................<<<<<................>>>>>.......<<<<<<<<<<<<....
CCCGCCTTAACTCAGCCtGGTAGAGTGCGCGGCTGTAGtatggtttgccggtatcggcaactgcgcggctACCGCGAT...........GtCCCCGGTCCGAATCCGGGAGGCGGGA... chr.trna31-TyrGTA Sc: 57.44  



Val tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCGTGGTCTAGTTGGCtA.TGACGTCGCCTTGACATGGCGGAG...........GtCCTGAGTTCGAATCTCAGCGGGCCCA... chr.trna25-ValGAC Sc: 68.15  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCGTGGTCTAGTTGGCtA.TGACGTCGCCTTCACACGGCGAAG...........AtCTCGTGTTCGAATCACGACGGGCCCA... chr.trna47-ValCAC Sc: 68.31  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCGTGGTCTAGC.GGT.A.TGACGTCGCCCTTACACGGCGAAG...........GtCACCGGTTCGAATCCGGTCGGGCCCA... chr.trna41-ValTAC Sc: 76.66

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.