tRNAscan-SE Analysis of the Campylobacter jejuni RM1221 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna24 (1763635-1763710)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1763668-1763670)	Score: 84.81
Seq: GGGGCATTAGCTCAGCTGGGAGAGCACAACGCTGGCAGCGTTGGGGtCAGCGGTTCGAACCCGCTATGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (39013-39088)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (39046-39048)	Score: 92.14
Seq: GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (776787-776862)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (776820-776822)	Score: 92.14
Seq: GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (433828-433903)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (433861-433863)	Score: 92.14
Seq: GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (498441-498517)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (498475-498477)	Score: 69.48
Seq: GTCCTCGTAGCTCAGCAGGAtAGAGCGCAAAATTCCTAATTTTGAGGcCGTGAGTTCGAATCTCGCCGTGGACACCA
Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

chr.trna17 (1021022-1021098)	Length: 77 bp
Type: Arg	Anticodon: GCG at 35-37 (1021056-1021058)	Score: 83.29
Seq: GCGCTCATAGCTCAGCTGGAtAGAGCATTTGATTGCGGTTCAAAAGGcCAGAGGTTCGAATCCTCTTGAGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1731863-1731787)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (1731829-1731827)	Score: 83.86
Seq: GCGCTCGTAGCTCAACTGGAtAGAGCGACAGACTTCGGATCTGTAGGtTATGGGTTCGATTCCTATCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (956566-956491)	Length: 76 bp
Type: Arg	Anticodon: TCT at 34-36 (956533-956531)	Score: 36.04
Seq: GACCCTTTCGTCTAGTGGCccAGGACAACACTCTCTCTGTGTGGAAACAGAGGTTCAAATCCTCTAGGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna30 (1731772-1731696)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1731738-1731736)	Score: 87.94
Seq: GCGTTCATAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCAGAGGTTCGAATCCTCTTGGGCGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1274952-1274878)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (1274920-1274918)	Score: 84.50
Seq: TCCGGATTAGCTCAGCGGTAGAGTAGTCGGCTGTTAACCGATTGGtCGTAGGTTCGAATCCTACATCCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna38 (956742-956666)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (956708-956706)	Score: 91.78
Seq: GCAGCGGTAGTTCAGCTGGTtAGAATGCCGCCCTGTCACGGCGGAGGtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (956357-956281)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (956323-956321)	Score: 91.78
Seq: GCAGCGGTAGTTCAGCTGGTtAGAATGCCGCCCTGTCACGGCGGAGGtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1691023-1691096)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (1691055-1691057)	Score: 72.19
Seq: GGCGACATAGCCAAGCGGTAAGGCATGGGCCTGCAAAGCCTTGAtCTCCGGTTCGAATCCGGATGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna43 (609623-609549)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (609591-609589)	Score: 71.34
Seq: TGGGGTATCGCCAAGCGGTAAGGCAACAGGTTTTGGTCCTGTCATtCAGGGGTTCGAATCCCTTTACCCCATCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (164490-164564)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (164523-164525)	Score: 66.15
Seq: GGCCCATTCGTCTAGCGGTtAGGACATCGCCCTTTCACGGCGGTAACACGAGTTCGAGTCTCGTATGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (904351-904425)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (904383-904385)	Score: 83.14
Seq: GCGGGAATAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGGGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1690832-1690906)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1690864-1690866)	Score: 88.10
Seq: GCGGGAATAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (472244-472320)	Length: 77 bp
Type: Gly	Anticodon: TCC at 35-37 (472278-472280)	Score: 96.94
Seq: GCGGGAGTAGCTCAGTTGGCtAGAGCATCAGCCTTCCAAGCTGAGGGtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1731944-1731868)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (1731910-1731908)	Score: 77.53
Seq: GTGAGTGTAGCTCAGTCGGTtAGAGCATCAGATTGTGGTCCTGAGGGtCGTGGGTTCAATTCCCATCACTCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (776871-776947)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (776905-776907)	Score: 93.24
Seq: GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAGGtCACAAGTTCAAGTCTTGTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (39097-39173)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (39131-39133)	Score: 93.24
Seq: GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAGGtCACAAGTTCAAGTCTTGTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (433912-433988)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (433946-433948)	Score: 93.24
Seq: GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAGGtCACAAGTTCAAGTCTTGTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (904254-904340)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (904288-904290)	Score: 75.00
Seq: GCCCGAGTGGTGAAACTGGTaGACGCGCCAGACTCAAAATCTGGTAAGGGCAACCTTGTGTCGGTTCGAGTCCGACCTCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna16 (951076-951161)	Length: 86 bp
Type: Leu	Anticodon: GAG at 35-37 (951110-951112)	Score: 55.92
Seq: GCGGTTATGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGCGCTCCGCGTGTGCGAGTTCAAATCTCGCTAACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1690916-1691004)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (1690950-1690952)	Score: 69.07
Seq: GCCCGGGTGGTGGAATTGGTaGACACAAGGGACTTAAAATCCCTCGGAATTTTTCTTCCGTGCCGGTTCAAGTCCGGCCTCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna31 (1731690-1731606)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (1731656-1731654)	Score: 76.79
Seq: GCGGATGTGGTGAAATTGGCaGACACGCCAGACTTAGGATCTGGTGCAGCAATGCGTGAAGGTTCAAGTCCTTTCATCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna36 (956952-956877)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (956919-956917)	Score: 81.97
Seq: GTCTCGTTAGCTCAGCCGGTAGAGCATCTCCCTTTTAAGGAGGGGGcCGTTGGTTCGAATCCAACACGGGACACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (956661-956586)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (956628-956626)	Score: 81.97
Seq: GTCTCGTTAGCTCAGCCGGTAGAGCATCTCCCTTTTAAGGAGGGGGcCGTTGGTTCGAATCCAACACGGGACACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1762202-1762126)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1762168-1762166)	Score: 81.03
Seq: GTCAGGGTAGCTCAGCTGGTtAGAGCGCTGGTCTCATAAGCCGGAGGtCGGGAGTTCAAGTCTCCCCCTTGACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna44 (609514-609439)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (609481-609479)	Score: 88.22
Seq: CGCGAAGTAGAGCAGTGGTtAGCTCGTCGGGCTCATAACCCGAAGGtCGGGAGTTCAAATCTCCCCTTCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna18 (1335641-1335717)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1335675-1335677)	Score: 97.76
Seq: GGATTTATAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTTGGtCGCAGGTTCGAGTCCTGCTAAATCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1372121-1372046)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (1372088-1372086)	Score: 85.44
Seq: GGTTGGATAGCTCAGTCGGTAGAGCAGCAGACTGAAAATCTGCGTGtCGGCAGTTCGATTCTGCCTCTAACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1732046-1731969)	Length: 78 bp
Type: Pro	Anticodon: TGG at 36-38 (1732011-1732009)	Score: 88.47
Seq: CGGGGTGTAGCGCAGTCtGGTtAGCGCACTTGGTTTGGGACCAAGGGGcCGAAGGTTCGAATCCTTTCACCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (1571032-1570935)	Length: 98 bp
Type: SeC	Anticodon: TCA at 35-37 (1570998-1570996)	Score: 35.94
Seq: GGAAGATTAGCGTATCTGGTgATCGCCACTGACTTCAAATCAGATGAAAGGATaGTTGaCTATTCTTtGGGGAGTTCGATTCTCTCATCTTCtCGCCA
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<...>.>>.>........<.<<.<...>>>>>.......<<<<<<<<<<<.<....

chr.trna33 (1440550-1440461)	Length: 90 bp
Type: Ser	Anticodon: GCT at 35-37 (1440516-1440514)	Score: 67.46
Seq: GGACAGATGGGTGAGCGGCtgAAACCACACCCCTGCTAAGGGTGCAGATCTTAACGGGTCTCGAGGGTTCAAATCCCTCTCTGTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1762338-1762425)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (1762372-1762374)	Score: 62.61
Seq: AGACAGGTGTCCGAGCGGTtgAAGGAGCACGCCTGGAACGCGTGTAAAGTGCAAGCTTTCGAGGGTTCAAATCCCTTCCTGTCTGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1691118-1691205)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (1691152-1691154)	Score: 68.51
Seq: CGGGAGATGGCTGAGTGGTcgAAAGCGGCGGTCTTGAAAACCGTTGAGGGTCACACCTCCAGGGGTTCGAATCCCTTTCTCCCGGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna9 (472422-472496)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (472454-472456)	Score: 83.71
Seq: GCTCGTATGGCTCAGAGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGCGGGTTCAATTCCCGCTATGAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (472026-472101)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (472059-472061)	Score: 96.83
Seq: GCTGGTTTAGCTCAGTTGGTAGAGCAGCTGCCTTGTAAGCAGCAGGtCGGGGGTTCAAGTCCCTTAACCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (473988-474063)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (474021-474023)	Score: 74.26
Seq: AGGGCAATAGCTCCAACGGTAGAGCGCCGGATTCCAAATCCGATGGtTGGGGGTTCGAATCCCTCTTGCCCTGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna7 (472152-472237)	Length: 86 bp
Type: Tyr	Anticodon: GTA at 35-37 (472186-472188)	Score: 64.32
Seq: GGTGAGTTACTCAAGTGGCcaACGAGGGCAGACTGTAAATCTGCTGGCTTTCGCCTtCCGTGGTTCGAATCCACGACTCACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna25 (1763714-1763789)	Length: 76 bp
Type: Val	Anticodon: GAC at 34-36 (1763747-1763749)	Score: 82.27
Seq: GGTTCCGTAGCTCAGCTGGTAGAGCACTACCTTGACATGGTAGTGGcCGTTGGTTCAAGTCCAATCGGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (956869-956794)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (956836-956834)	Score: 90.03
Seq: GGTCGCTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGATGtCATAAGTTCGAGTCTTATAGTGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna41 (956484-956409)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (956451-956449)	Score: 90.03
Seq: GGTCGCTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGATGtCATAAGTTCGAGTCTTATAGTGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.