tRNAscan-SE Analysis of the Campylobacter jejuni RM1221 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	24	1763635	1763710	View	Ala	GGC	0	0	84.81	62.27	22.54	Both

chr	1	39013	39088	View	Ala	TGC	0	0	92.14	73.97	18.17	Both
chr	12	776787	776862	View	Ala	TGC	0	0	92.14	73.97	18.17	Both
chr	4	433828	433903	View	Ala	TGC	0	0	92.14	73.97	18.17	Both

chr	11	498441	498517	View	Arg	CCT	0	0	69.48	43.65	25.83	Both

chr	17	1021022	1021098	View	Arg	GCG	0	0	83.29	58.24	25.05	Both

chr	29	1731863	1731787	View	Arg	TCG	0	0	83.86	65.73	18.13	Both

chr	40	956566	956491	View	Arg	TCT	0	0	36.04	15.16	20.88	Eufind
chr	30	1731772	1731696	View	Arg	TCT	0	0	87.94	71.22	16.72	Both

chr	35	1274952	1274878	View	Asn	GTT	0	0	84.50	58.27	26.23	Both

chr	38	956742	956666	View	Asp	GTC	0	0	91.78	70.89	20.89	Both
chr	42	956357	956281	View	Asp	GTC	0	0	91.78	70.89	20.89	Both

chr	21	1691023	1691096	View	Cys	GCA	0	0	72.19	46.77	25.42	Both

chr	43	609623	609549	View	Gln	TTG	0	0	71.34	45.24	26.10	Both

chr	3	164490	164564	View	Glu	TTC	0	0	66.15	43.11	23.04	Both

chr	15	904351	904425	View	Gly	GCC	0	0	83.14	66.70	16.44	Both
chr	19	1690832	1690906	View	Gly	GCC	0	0	88.10	63.93	24.17	Both

chr	8	472244	472320	View	Gly	TCC	0	0	96.94	81.20	15.74	Both

chr	28	1731944	1731868	View	His	GTG	0	0	77.53	56.49	21.04	Both

chr	13	776871	776947	View	Ile	GAT	0	0	93.24	68.14	25.10	Both
chr	2	39097	39173	View	Ile	GAT	0	0	93.24	68.14	25.10	Both
chr	5	433912	433988	View	Ile	GAT	0	0	93.24	68.14	25.10	Both

chr	14	904254	904340	View	Leu	CAA	0	0	75.00	44.35	30.65	Both

chr	16	951076	951161	View	Leu	GAG	0	0	55.92	25.63	30.29	Both

chr	20	1690916	1691004	View	Leu	TAA	0	0	69.07	43.32	25.75	Both

chr	31	1731690	1731606	View	Leu	TAG	0	0	76.79	46.54	30.25	Both

chr	36	956952	956877	View	Lys	TTT	0	0	81.97	60.60	21.37	Both
chr	39	956661	956586	View	Lys	TTT	0	0	81.97	60.60	21.37	Both

chr	26	1762202	1762126	View	Met	CAT	0	0	81.03	65.25	15.78	Both
chr	44	609514	609439	View	Met	CAT	0	0	88.22	58.69	29.53	Both
chr	18	1335641	1335717	View	Met	CAT	0	0	97.76	72.00	25.76	Both

chr	34	1372121	1372046	View	Phe	GAA	0	0	85.44	59.96	25.48	Both

chr	27	1732046	1731969	View	Pro	TGG	0	0	88.47	65.57	22.90	Both

chr	32	1571032	1570935	View	SeC	TCA	0	0	35.94	0.00	0.00	Both

chr	33	1440550	1440461	View	Ser	GCT	0	0	67.46	32.85	34.61	Both

chr	23	1762338	1762425	View	Ser	GGA	0	0	62.61	25.69	36.92	Both

chr	22	1691118	1691205	View	Ser	TGA	0	0	68.51	37.75	30.76	Both

chr	9	472422	472496	View	Thr	GGT	0	0	83.71	62.76	20.95	Both

chr	6	472026	472101	View	Thr	TGT	0	0	96.83	76.27	20.56	Both

chr	10	473988	474063	View	Trp	CCA	0	0	74.26	58.55	15.71	Both

chr	7	472152	472237	View	Tyr	GTA	0	0	64.32	23.92	40.40	Both

chr	25	1763714	1763789	View	Val	GAC	0	0	82.27	60.91	21.36	Both

chr	37	956869	956794	View	Val	TAC	0	0	90.03	65.59	24.44	Both
chr	41	956484	956409	View	Val	TAC	0	0	90.03	65.59	24.44	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.