tRNAscan-SE Analysis of the Campylobacter jejuni RM1221 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCATTAGCTCAGCTGGGAGAGCACAACGCTGGCAGCGTTGGG...........GtCAGCGGTTCGAACCCGCTATGCTCCACCA chr.trna24-AlaGGC Sc: 84.81  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATTCTCCACCA chr.trna4-AlaTGC Sc: 92.14  
GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATTCTCCACCA chr.trna12-AlaTGC Sc: 92.14  
GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAG...........GtCAGCGGTTCGATCCCGCTATTCTCCACCA chr.trna1-AlaTGC Sc: 92.14  



Arg tRNAs



>>>>>>>..>>>>...........<<<<.>>>>>........<<<<<...................>>>>>.......<<<<<..<<<<<<<....
GCGCTCATAGCTCAGCTGGAt.A.GAGCATTTGATTGCGGT.TCAAAAG..............GcCAGAGGTTCGAATCCTCT..TGAGCGCACCA chr.trna17-ArgGCG Sc: 83.29  


>>>>>>>..>>>>...........<<<<.>>>>>........<<<<<...................>>>>>.......<<<<<..<<<<<<<....
GCGCTCGTAGCTCAACTGGAt.A.GAGCGACAGACTTCGGA.TCTGTAG..............GtTATGGGTTCGATTCCTAT..CGGGCGCACCA chr.trna29-ArgTCG Sc: 83.86  

>>>>.>>..>>>>...........<<<<.>>>>>........<<<<<...................>>>>>.......<<<<<..<<.<<<<....
GTCCTCGTAGCTCAGCAGGAt.A.GAGCGCAAAATTCCTAA.TTTTGAG..............GcCGTGAGTTCGAATCTCGC..CGTGGACACCA chr.trna11-ArgCCT Sc: 69.48  

>>>>>>>..>>>>...........<<<<.>>>>>........<<<<<...................>>>>>.......<<<<<..<<<<<<<....
GCGTTCATAGCTCAGCTGGAt.A.GAGCAACGGCCTTCTAA.GCCGTAG..............GtCAGAGGTTCGAATCCTCT..TGGGCGTACCA chr.trna30-ArgTCT Sc: 87.94  
>>>>>>>..>>>>...........<<<<.>>>>..........<<<<...................>>>>>.......<<<<<..<<<<<<<....
GACCCTTTCGTCTAGT.GGCccA.GGACAACACTCTCTC...TGTGTG.GAAA............CAGAGGTTCAAATCCTCT..AGGGGTCGCCA chr.trna40-ArgTCT Sc: 36.04  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCGGATTAGCTCAGCGGTA.GAGTAGTCGGCTGTTAACCGATTG...........GtCGTAGGTTCGAATCCTACATCCGGAGCCA chr.trna35-AsnGTT Sc: 84.50  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCAGCGGTAGTTCAGCTGGTtAGAATGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA chr.trna42-AspGTC Sc: 91.78  
GCAGCGGTAGTTCAGCTGGTtAGAATGCCGCCCTGTCACGGCGGAG...........GtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA chr.trna38-AspGTC Sc: 91.78  



Cys tRNAs



>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<.<<<<<<<....
GGCGACATAGCCAAGCGGTA.AGGCATGGGCCTGCAAAGCCTTG...........AtCTCCGGTTCGAATCCGGA.TGTCGCCTCCA chr.trna21-CysGCA Sc: 72.19  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATCGCCAAGCGGTA.AGGCAACAGGTTTTGGTCCTGTCA...........TtCAGGGGTTCGAATCCCTTTACCCCATCCA chr.trna43-GlnTTG Sc: 71.34  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCATTCGTCTAGCGGTtA.GGACATCGCCCTTTCACGGCGGTA...........ACACGAGTTCGAGTCTCGTATGGGTCACCA chr.trna3-GluTTC Sc: 66.15  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGG.GGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAATCTCGTTTCCCGCTCCA chr.trna19-GlyGCC Sc: 88.10  
GCGGGAATAGCTCAGG.GGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGGGTTCGAATCTCGTTTCCCGCTCCA chr.trna15-GlyGCC Sc: 83.14  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGCTCAGTTGGCtA.GAGCATCAGCCTTCCAAGCTGAGG...........GtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA chr.trna8-GlyTCC Sc: 96.94  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GTGAGTGTAGCTCAGTCGGTtAGAGCATCAGATTGTGGTCCTGAGG...........GtCGTGGGTTCAATTCCCATCACTCACCCCA chr.trna28-HisGTG Sc: 77.53  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAG...........GtCACAAGTTCAAGTCTTGTTAGGCCCACCA chr.trna5-IleGAT Sc: 93.24  
GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAG...........GtCACAAGTTCAAGTCTTGTTAGGCCCACCA chr.trna2-IleGAT Sc: 93.24  
GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAG...........GtCACAAGTTCAAGTCTTGTTAGGCCCACCA chr.trna13-IleGAT Sc: 93.24  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTTATGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGCGC.TCC....GCGTGTGCGAGTTCAAATCTCGC.TAACCGCACCA chr.trna16-LeuGAG Sc: 55.92  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGTGAAATTGGCaGACACGCCAGACTTAGGATCTGGTGCA..GCAA....TGCGTGAAGGTTCAAGTCCTTT.CATCCGCACCA chr.trna31-LeuTAG Sc: 76.79  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGAGTGGTGAAACTGGTaGACGCGCCAGACTCAAAATCTGGTAAGG.GCAA...CCTTGTGTCGGTTCGAGTCCGAC.CTCGGGCACCA chr.trna14-LeuCAA Sc: 75.00  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGTGGAATTGGTaGACACAAGGGACTTAAAATCCCTCGGAATTTTT..CTTCCGTGCCGGTTCAAGTCCGGC.CTCGGGCACCA chr.trna20-LeuTAA Sc: 69.07  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCTCGTTAGCTCAGCCGGTAGAGCATCTCCCTTTTAAGGAGGGG...........GcCGTTGGTTCGAATCCAACACGGGACACCA chr.trna39-LysTTT Sc: 81.97  
GTCTCGTTAGCTCAGCCGGTAGAGCATCTCCCTTTTAAGGAGGGG...........GcCGTTGGTTCGAATCCAACACGGGACACCA chr.trna36-LysTTT Sc: 81.97  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGATTTATAGCTCAGTTGGTtA.GAGCAACCGGCTCATAACCGGTTG...........GtCGCAGGTTCGAGTCCTGCTAAATCCACCA chr.trna18-MetCAT Sc: 97.76  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGAAGTAGAGCAGT.GGTtA.GCTCGTCGGGCTCATAACCCGAAG...........GtCGGGAGTTCAAATCTCCCCTTCGCAACCA chr.trna44-MetCAT Sc: 88.22  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTCAGGGTAGCTCAGCTGGTtA.GAGCGCTGGTCTCATAAGCCGGAG...........GtCGGGAGTTCAAGTCTCCCCCTTGACACCA chr.trna26-MetCAT Sc: 81.03  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTGGATAGCTCAGTCGGTAGAGCAGCAGACTGAAAATCTGCGT...........GtCGGCAGTTCGATTCTGCCTCTAACCACCA chr.trna34-PheGAA Sc: 85.44  



Pro tRNAs





>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCGCAGTCtGGTtAGCGCACTTGGTTTGGGACCAAGGG...........GcCGAAGGTTCGAATCCTTTCACCCCGACCA chr.trna27-ProTGG Sc: 88.47  



SeC tRNAs


>>>>>>>..>>>...........<<<..>>>>.......<<<<...>.>>.>........<.<<.<...>>>>>.......<<<<<<<<<<<.<....
GGAAGATTAGCGTATCTGGTgATCGCCACTGACTTCAAATCAGATGAAAGGATaGTTGaCTATTCTTtGGGGAGTTCGATTCTCTCATCTTCtCGCCA chr.trna32-SeCTCA Sc: 35.94  



Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>........<<<<..>>>>>.......<<<<<<<<<<<<....
AGACAGGTGTCCGAGCGGTtgA.AGGAGCACGCCTGGAACGCGTGTAAAGT.GCAA...GCTTTCGAGGGTTCAAATCCCTTCCTGTCTGCCA chr.trna23-SerGGA Sc: 62.61  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..........<<<..>>>>>.......<<<<<<<<<<<<....
CGGGAGATGGCTGAGTGGTcgA.AAGCGGCGGTCTTGAAAACCGTTGAGGG.TCAC...ACCTCCAGGGGTTCGAATCCCTTTCTCCCGGCCA chr.trna22-SerTGA Sc: 68.51  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>......<<<<<..>>>>>.......<<<<<<<<<<<<....
GGACAGATGGGTGAGCGGCtgA.AACCACACCCCTGCTAAGGGTGCAGATCTTAAC..GGGTCTCGAGGGTTCAAATCCCTCTCTGTCCGCCA chr.trna33-SerGCT Sc: 67.46  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTCGTATGGCTCAGA.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGCGGGTTCAATTCCCGCTATGAGCTCCA chr.trna9-ThrGGT Sc: 83.71  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGGTTTAGCTCAGTTGGTA.GAGCAGCTGCCTTGTAAGCAGCAG...........GtCGGGGGTTCAAGTCCCTTAACCAGCTCCA chr.trna6-ThrTGT Sc: 96.83  



Trp tRNAs


>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
AGGGCAATAGCTCCAACGGTAGAGCGCCGGATTCCAAATCCGATG...........GtTGGGGGTTCGAATCCCTCTTGCCCTGCCA chr.trna10-TrpCCA Sc: 74.26  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGTGAGTTACTCAAGTGGCcaA.CGAGGGCAGACTGTAAATCTGCTGGCTTTC....GCCTtCCGTGGTTCGAATCCACG.ACTCACCACCA chr.trna7-TyrGTA Sc: 64.32  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTCCGTAGCTCAGCTGGTAGAGCACTACCTTGACATGGTAGTG...........GcCGTTGGTTCAAGTCCAATCGGAGCCACCA chr.trna25-ValGAC Sc: 82.27  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCGCTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGAT...........GtCATAAGTTCGAGTCTTATAGTGACCACCA chr.trna41-ValTAC Sc: 90.03  
GGTCGCTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGAT...........GtCATAAGTTCGAGTCTTATAGTGACCACCA chr.trna37-ValTAC Sc: 90.03

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.