tRNAscan-SE Analysis of the Campylobacter jejuni Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna24 (1626625-1626700)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1626658-1626660)	Score: 84.81
Seq: GGGGCATTAGCTCAGCTGGGAGAGCACAACGCTGGCAGCGTTGGGGtCAGCGGTTCGAACCCGCTATGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (40866-40941)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (40899-40901)	Score: 92.14
Seq: GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (698041-698116)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (698074-698076)	Score: 92.14
Seq: GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (395747-395822)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (395780-395782)	Score: 92.14
Seq: GGGGAATTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTATTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna11 (460270-460346)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (460304-460306)	Score: 69.48
Seq: GTCCTCGTAGCTCAGCAGGAtAGAGCGCAAAATTCCTAATTTTGAGGcCGTGAGTTCGAATCTCGCCGTGGACACCA
Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

chr.trna17 (943535-943611)	Length: 77 bp
Type: Arg	Anticodon: GCG at 35-37 (943569-943571)	Score: 83.29
Seq: GCGCTCATAGCTCAGCTGGAtAGAGCATTTGATTGCGGTTCAAAAGGcCAGAGGTTCGAATCCTCTTGAGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (1590527-1590451)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (1590493-1590491)	Score: 83.86
Seq: GCGCTCGTAGCTCAACTGGAtAGAGCGACAGACTTCGGATCTGTAGGtTATGGGTTCGATTCCTATCGGGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (878380-878305)	Length: 76 bp
Type: Arg	Anticodon: TCT at 34-36 (878347-878345)	Score: 36.04
Seq: GACCCTTTCGTCTAGTGGCccAGGACAACACTCTCTCTGTGTGGAAACAGAGGTTCAAATCCTCTAGGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna30 (1590436-1590360)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1590402-1590400)	Score: 87.94
Seq: GCGTTCATAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCAGAGGTTCGAATCCTCTTGGGCGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1154174-1154100)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (1154142-1154140)	Score: 84.50
Seq: TCCGGATTAGCTCAGCGGTAGAGTAGTCGGCTGTTAACCGATTGGtCGTAGGTTCGAATCCTACATCCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna38 (878556-878480)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (878522-878520)	Score: 91.78
Seq: GCAGCGGTAGTTCAGCTGGTtAGAATGCCGCCCTGTCACGGCGGAGGtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (878171-878095)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (878137-878135)	Score: 91.78
Seq: GCAGCGGTAGTTCAGCTGGTtAGAATGCCGCCCTGTCACGGCGGAGGtCGCGGGTTCGAGCCCCGTCCGCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1549848-1549921)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (1549880-1549882)	Score: 72.19
Seq: GGCGACATAGCCAAGCGGTAAGGCATGGGCCTGCAAAGCCTTGAtCTCCGGTTCGAATCCGGATGTCGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna43 (533280-533206)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (533248-533246)	Score: 71.34
Seq: TGGGGTATCGCCAAGCGGTAAGGCAACAGGTTTTGGTCCTGTCATtCAGGGGTTCGAATCCCTTTACCCCATCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (165728-165802)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (165761-165763)	Score: 66.15
Seq: GGCCCATTCGTCTAGCGGTtAGGACATCGCCCTTTCACGGCGGTAACACGAGTTCGAGTCTCGTATGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (826163-826237)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (826195-826197)	Score: 88.10
Seq: GCGGGAATAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1549657-1549731)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1549689-1549691)	Score: 88.10
Seq: GCGGGAATAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (434084-434160)	Length: 77 bp
Type: Gly	Anticodon: TCC at 35-37 (434118-434120)	Score: 96.94
Seq: GCGGGAGTAGCTCAGTTGGCtAGAGCATCAGCCTTCCAAGCTGAGGGtCGCGGGTTCGAGTCCCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1590607-1590531)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (1590573-1590571)	Score: 77.53
Seq: GTGAGTGTAGCTCAGTCGGTtAGAGCATCAGATTGTGGTCCTGAGGGtCGTGGGTTCAATTCCCATCACTCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (698125-698201)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (698159-698161)	Score: 93.24
Seq: GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAGGtCACAAGTTCAAGTCTTGTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (40950-41026)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (40984-40986)	Score: 93.24
Seq: GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAGGtCACAAGTTCAAGTCTTGTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (395831-395907)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (395865-395867)	Score: 93.24
Seq: GGGCCTATAGCTCAGCTGGTtAGAGTGCACCCCTGATAAGGGTGAGGtCACAAGTTCAAGTCTTGTTAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (826066-826152)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (826100-826102)	Score: 75.00
Seq: GCCCGAGTGGTGAAACTGGTaGACGCGCCAGACTCAAAATCTGGTAAGGGCAACCTTGTGTCGGTTCGAGTCCGACCTCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna16 (872889-872974)	Length: 86 bp
Type: Leu	Anticodon: GAG at 35-37 (872923-872925)	Score: 55.92
Seq: GCGGTTATGGTGGAATTGGTaGACACGCCATCTTGAGGGGGTGGTGCGCTCCGCGTGTGCGAGTTCAAATCTCGCTAACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1549741-1549829)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (1549775-1549777)	Score: 69.07
Seq: GCCCGGGTGGTGGAATTGGTaGACACAAGGGACTTAAAATCCCTCGGAATTTTTCTTCCGTGCCGGTTCAAGTCCGGCCTCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna31 (1590355-1590271)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (1590321-1590319)	Score: 76.79
Seq: GCGGATGTGGTGAAATTGGCaGACACGCCAGACTTAGGATCTGGTGCAGCAATGCGTGAAGGTTCAAGTCCTTTCATCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna36 (878766-878691)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (878733-878731)	Score: 81.97
Seq: GTCTCGTTAGCTCAGCCGGTAGAGCATCTCCCTTTTAAGGAGGGGGcCGTTGGTTCGAATCCAACACGGGACACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (878475-878400)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (878442-878440)	Score: 81.97
Seq: GTCTCGTTAGCTCAGCCGGTAGAGCATCTCCCTTTTAAGGAGGGGGcCGTTGGTTCGAATCCAACACGGGACACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1626355-1626279)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1626321-1626319)	Score: 81.03
Seq: GTCAGGGTAGCTCAGCTGGTtAGAGCGCTGGTCTCATAAGCCGGAGGtCGGGAGTTCAAGTCTCCCCCTTGACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna44 (533172-533097)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (533139-533137)	Score: 88.22
Seq: CGCGAAGTAGAGCAGTGGTtAGCTCGTCGGGCTCATAACCCGAAGGtCGGGAGTTCAAATCTCCCCTTCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna18 (1215057-1215133)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1215091-1215093)	Score: 97.76
Seq: GGATTTATAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTTGGtCGCAGGTTCGAGTCCTGCTAAATCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1215316-1215241)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (1215283-1215281)	Score: 85.44
Seq: GGTTGGATAGCTCAGTCGGTAGAGCAGCAGACTGAAAATCTGCGTGtCGGCAGTTCGATTCTGCCTCTAACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (1590709-1590632)	Length: 78 bp
Type: Pro	Anticodon: TGG at 36-38 (1590674-1590672)	Score: 88.47
Seq: CGGGGTGTAGCGCAGTCtGGTtAGCGCACTTGGTTTGGGACCAAGGGGcCGAAGGTTCGAATCCTTTCACCCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (1432467-1432370)	Length: 98 bp
Type: SeC	Anticodon: TCA at 35-37 (1432433-1432431)	Score: 35.94
Seq: GGAAGATTAGCGTATCTGGTgATCGCCACTGACTTCAAATCAGATGAAAGGATaGTTGaCTATTCTTtGGGGAGTTCGATTCTCTCATCTTCtCGCCA
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<...>.>>.>........<.<<.<...>>>>>.......<<<<<<<<<<<.<....

chr.trna33 (1287826-1287737)	Length: 90 bp
Type: Ser	Anticodon: GCT at 35-37 (1287792-1287790)	Score: 68.31
Seq: GGACAGATGGGTGAGTGGCtgAAACCACACCCCTGCTAAGGGTGCAGATCTTAACGGGTCTCGAGGGTTCAAATCCCTCTCTGTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1626491-1626578)	Length: 88 bp
Type: Ser	Anticodon: GGA at 35-37 (1626525-1626527)	Score: 63.73
Seq: AGACAGGTGTCCGAGCGGTtgAAGGAGCACGCCTGGAACGCGTGTAAAGTGCAAGCTTTCGAGGGTTCGAATCCCTTCCTGTCTGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1549943-1550030)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (1549977-1549979)	Score: 68.51
Seq: CGGGAGATGGCTGAGTGGTcgAAAGCGGCGGTCTTGAAAACCGTTGAGGGTCACACCTCCAGGGGTTCGAATCCCTTTCTCCCGGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna9 (434265-434339)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (434297-434299)	Score: 83.71
Seq: GCTCGTATGGCTCAGAGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGCGGGTTCAATTCCCGCTATGAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (433867-433942)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (433900-433902)	Score: 96.83
Seq: GCTGGTTTAGCTCAGTTGGTAGAGCAGCTGCCTTGTAAGCAGCAGGtCGGGGGTTCAAGTCCCTTAACCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (435831-435906)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (435864-435866)	Score: 74.26
Seq: AGGGCAATAGCTCCAACGGTAGAGCGCCGGATTCCAAATCCGATGGtTGGGGGTTCGAATCCCTCTTGCCCTGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna7 (433992-434077)	Length: 86 bp
Type: Tyr	Anticodon: GTA at 35-37 (434026-434028)	Score: 64.32
Seq: GGTGAGTTACTCAAGTGGCcaACGAGGGCAGACTGTAAATCTGCTGGCTTTCGCCTtCCGTGGTTCGAATCCACGACTCACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna25 (1626704-1626779)	Length: 76 bp
Type: Val	Anticodon: GAC at 34-36 (1626737-1626739)	Score: 82.27
Seq: GGTTCCGTAGCTCAGCTGGTAGAGCACTACCTTGACATGGTAGTGGcCGTTGGTTCAAGTCCAATCGGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (878683-878608)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (878650-878648)	Score: 90.03
Seq: GGTCGCTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGATGtCATAAGTTCGAGTCTTATAGTGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna41 (878298-878223)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (878265-878263)	Score: 90.03
Seq: GGTCGCTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGATGtCATAAGTTCGAGTCTTATAGTGACCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.