tRNAscan-SE Analysis of the Burkholderia pseudomallei K96243 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr1.trna25 (3888250-3888175)	Length: 76 bp
Type: Ala	Anticodon: CGC at 34-36 (3888217-3888215)	Score: 84.28
Seq: GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAGGtCGGGAGTTCGATCCTCCTCCGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna41 (2636964-2636889)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (2636931-2636929)	Score: 86.46
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna27 (3834493-3834418)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (3834460-3834458)	Score: 90.89
Seq: GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCTGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr1.trna34 (3627182-3627107)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (3627149-3627147)	Score: 90.89
Seq: GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCTGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr1.trna4 (1433475-1433550)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1433508-1433510)	Score: 90.89
Seq: GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCTGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr2.trna2 (487057-487132)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (487090-487092)	Score: 90.89
Seq: GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCTGCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr1.trna17 (3089651-3089727)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (3089685-3089687)	Score: 87.10
Seq: GCGGCTGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCAGCCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna18 (3089788-3089864)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (3089822-3089824)	Score: 87.10
Seq: GCGGCTGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCAGCCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna23 (3975948-3975873)	Length: 76 bp
Type: Arg	Anticodon: CCG at 34-36 (3975915-3975913)	Score: 82.41
Seq: GCGCCCGTAGCTCAATGGAtAGAGTACTGCCCTCCGAAGGCAGGGGtTGCTGGTTCGATCCCAGCCGGGCGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna49 (1225859-1225785)	Length: 75 bp
Type: Arg	Anticodon: CCT at 34-36 (1225826-1225824)	Score: 72.32
Seq: CTCCCCGTAGTTCAATGGAtAGAACAAGCGCCTCCTAAGCGCTAGATACAGGTTCGATTCCTGTCGGGGGGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna5 (1614340-1614416)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1614374-1614376)	Score: 86.86
Seq: CCGCCCTTAGCTCAGTCGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCACACGTTCGAATCGTGTAGGGCGGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna14 (2970119-2970194)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (2970152-2970154)	Score: 85.87
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr1.trna15 (2970284-2970359)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (2970317-2970319)	Score: 85.87
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr1.trna43 (2636585-2636509)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2636551-2636549)	Score: 95.34
Seq: GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna45 (2636287-2636211)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (2636253-2636251)	Score: 95.34
Seq: GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna7 (1640584-1640660)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1640618-1640620)	Score: 95.34
Seq: GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr2.trna4 (1324168-1324241)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (1324200-1324202)	Score: 56.83
Seq: GGCGCGGTAGCAAAGCGGTTATGCGGCGGCCTGCAAAGCCGCTCAGGTCGGTTCGACTCCGGCTCGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna38 (2922849-2922776)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (2922817-2922815)	Score: 64.85
Seq: GGCGCGATAGCAAAGCGGTTATGCAGCGGCCTGCAAAGCCGTGTAGGCCGGTTCGACTCCGGCTCGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna52 (575204-575128)	Length: 77 bp
Type: Gln	Anticodon: TTG at 35-37 (575170-575168)	Score: 75.81
Seq: AGGGGAGTCGCCAAGTTGGTtAAGGCACCGGATTTTGATTCCGGCATgCGAGGGTTCGAGTCCTTCCTCCCCTGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna42 (2636738-2636663)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2636704-2636702)	Score: 60.10
Seq: GTCCCCTTCGTCTAGAGGCctAGGACATCACCCTTTCACGGTGAGTACAGGGGTTCGAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna44 (2636444-2636369)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2636410-2636408)	Score: 60.10
Seq: GTCCCCTTCGTCTAGAGGCctAGGACATCACCCTTTCACGGTGAGTACAGGGGTTCGAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna20 (3166075-3166149)	Length: 75 bp
Type: Gly	Anticodon: CCC at 34-36 (3166108-3166110)	Score: 61.13
Seq: GCGGGCGTCGTATAATGGCcATTACCTCAGCTTCCCAAGCTGATGACGTGGGTTCGATTCCCATCGCCCGCTCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr1.trna36 (2923174-2923099)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (2923141-2923139)	Score: 89.05
Seq: GCGGGAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGCGAGTTCGAGACTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna37 (2923039-2922964)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (2923006-2923004)	Score: 89.05
Seq: GCGGGAGTAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGCGAGTTCGAGACTCGTCTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna29 (3829969-3829896)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (3829937-3829935)	Score: 82.17
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCCTTCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna8 (2207918-2207993)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (2207951-2207953)	Score: 80.89
Seq: GTGGCTGTAGCTCAGTTGGTAGAGTCCAGGATTGTGATTCCTGTTGtCGTGGGTTCGAGTCCCATCAGCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna26 (3834604-3834528)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (3834570-3834568)	Score: 93.29
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGAATCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna3 (1433364-1433440)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1433398-1433400)	Score: 93.29
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGAATCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna33 (3627293-3627217)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (3627259-3627257)	Score: 93.29
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGAATCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr2.trna1 (486946-487022)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (486980-486982)	Score: 93.29
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGAATCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna50 (1112378-1112294)	Length: 85 bp
Type: Leu	Anticodon: CAA at 35-37 (1112344-1112342)	Score: 75.09
Seq: GCCCAGGTGGTGAAATTGGTaGACGCAGGGGACTCAAAATCCCCCGCCGCAAGGCGTGCCGGTTCGATTCCGGCCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna10 (2230084-2230170)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (2230118-2230120)	Score: 69.58
Seq: GCCCAGGTGGCGAAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAACACTgTGGAGGTTCGAGTCCTCTCTTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr1.trna11 (2230328-2230414)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (2230362-2230364)	Score: 76.78
Seq: GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAACACCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna2 (1396551-1396635)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (1396585-1396587)	Score: 63.68
Seq: GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGCGAAAGCTGTGCGAGTTCGAGTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr2.trna7 (1040466-1040382)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (1040432-1040430)	Score: 65.46
Seq: GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGCGAAAGCCGTGCGAGTTCGAGTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna46 (2509522-2509436)	Length: 87 bp
Type: Leu	Anticodon: TAG at 35-37 (2509488-2509486)	Score: 77.10
Seq: GCGTGAGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGACGCCCGCAAGGGCGTGCCGGTTCGAGTCCGGCCTCACGCACCA
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

chr1.trna53 (127486-127411)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (127453-127451)	Score: 94.68
Seq: GGGGCGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAGGtCGAGTGTTCGAGTCACTCACGCCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna21 (3305048-3305123)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (3305081-3305083)	Score: 92.38
Seq: GGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGtCACTGGTTCGAATCCAGTACGGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna39 (2782762-2782686)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2782728-2782726)	Score: 86.01
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTACCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr1.trna9 (2216305-2216381)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2216339-2216341)	Score: 86.01
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTACCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr2.trna6 (2406760-2406685)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (2406727-2406725)	Score: 86.24
Seq: GGGCCTGTAGCTCAGGGGTtAGAGCAGTCGACTCATAATCGATTGGtCGCGGGTTCGAAACCCGCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna51 (898688-898612)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (898654-898652)	Score: 88.36
Seq: GGCGAATTAGCTCAGTCGGTtAGAGCGACGGAATCATAATCCGCAGGtCCGGGGTTCGAGTCCCTGATTCGCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr1.trna1 (145379-145454)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (145412-145414)	Score: 87.37
Seq: GGCCCGGTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGTGtCGGTGGTTCGATTCCGCCCCAGGCCACCA
Str: >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

chr1.trna22 (3583348-3583424)	Length: 77 bp
Type: Pro	Anticodon: CGG at 35-37 (3583382-3583384)	Score: 81.43
Seq: CGGGGTGTAGCTTAGCCtGGTAGAGCGCTACGTTCGGGACGTAGAGGcCGGAGGTTCGAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna12 (2304349-2304425)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (2304383-2304385)	Score: 81.38
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGTACCTGCATGGGGTGCAGGTGGtCGGAGGTTCAAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna48 (1604119-1604043)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1604085-1604083)	Score: 88.66
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCATCTGATTTGGGATCAGAGGGtCGTAGGTTCGAATCCTATCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna24 (3964396-3964326)	Length: 71 bp
Type: Ser	Anticodon: CGA at 51-53 (3964346-3964344)	Score: 26.60
Seq: GCGCATGAAATGTAttCTCCACTGCCCTCCGAAGGCAGGGGtTGCTGGTTCGATCCCAGCCGGGCGCGCCA
Str: >>>>.>>..............>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

chr1.trna35 (3119202-3119112)	Length: 91 bp
Type: Ser	Anticodon: CGA at 35-37 (3119168-3119166)	Score: 69.83
Seq: GGAAAGGTGGCAGAGAGGTcgAATGCGCCGGACTCGAAATCCGGTATACGGTTATaCCGTATCGTGGGTTCGAATCCCACCCTTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr1.trna40 (2700279-2700186)	Length: 94 bp
Type: Ser	Anticodon: GCT at 35-37 (2700245-2700243)	Score: 69.97
Seq: GGAGACGTGGCCGAGAGGTcgAAGGCACTCCCCTGCTAAGGGAGCATCTGGGCCAAaACCTGGAtCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>.>>.......<<.<<...>>>>>.......<<<<<<<<<<<<....

chr2.trna3 (518898-518987)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (518932-518934)	Score: 75.69
Seq: GGAGAGATGGATGAGTGGTttAAGTCGCACGCCTGGAAAGCGTGTATAGGTGAAAGCCTATCGGGGGTTCGAATCCCCCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr1.trna19 (3097245-3097332)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (3097279-3097281)	Score: 78.34
Seq: GGAAGCGTGGCCGAGTGGTttAAGGCACTGGTCTTGAAAACCAGCGACGGGCAACCGTCCGTGAGTTCGAATCTCACCGCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<....

chr1.trna16 (3076047-3076122)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (3076080-3076082)	Score: 88.22
Seq: GCCGGTGTAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGtCGGAAGTTCGAGTCTTCTCTCCGGCACCA
Str: >>>>>.>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<....

chr1.trna30 (3829871-3829797)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (3829839-3829837)	Score: 90.12
Seq: GCCCATGTGGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGGCAGTTCGATCCTGCCCATGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna32 (3724935-3724860)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (3724902-3724900)	Score: 81.30
Seq: GCCGGCTTAGCTCATCTGGTAGAGCAGTTGATTTGTAATCATCAGGtGGCGGGTTCGAGTCCTGCAGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna31 (3828484-3828409)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (3828451-3828449)	Score: 84.85
Seq: AGGGGTATAGCTCAACTGGCAGAGCGTCGGTCTCCAAAACCGAAGGtTGGGGGTTCGATTCCCTCTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna28 (3830098-3830013)	Length: 86 bp
Type: Tyr	Anticodon: GTA at 35-37 (3830064-3830062)	Score: 66.50
Seq: GGAGGGGTGCCCGAGTGGCtaAAGGGGGCAGACTGTAAATCTGTTGGCTTACGCCTaCGTTGGTTCGAATCCAACCTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chr1.trna13 (2818426-2818500)	Length: 75 bp
Type: Val	Anticodon: CAC at 33-35 (2818458-2818460)	Score: 91.15
Seq: GGGCGGTTAGCTCAGCGGTAGAGCACTGCCTTCACACGGCAGGGGtCACTGGTTCGATCCCAGTACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna47 (2316995-2316919)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (2316961-2316959)	Score: 91.08
Seq: AGGCTCGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAATCCAATCGAGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr2.trna5 (2727288-2727212)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (2727254-2727252)	Score: 91.08
Seq: AGGCTCGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAATCCAATCGAGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr1.trna6 (1637007-1637082)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1637040-1637042)	Score: 93.03
Seq: GGGTGCTTAGCTCAGTTGGTAGAGCGGCGCCCTTACAAGGCGTAGGtCGGGAGTTCGAGCCTCTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.