tRNAscan-SE Analysis of the Burkholderia pseudomallei K96243 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr1	25	3888250	3888175	Ala	CGC	0	0	84.28	68.33	15.95	Both

chr1	41	2636964	2636889	Ala	GGC	0	0	86.46	68.18	18.28	Both

chr1	27	3834493	3834418	Ala	TGC	0	0	90.89	78.34	12.55	Both
chr1	34	3627182	3627107	Ala	TGC	0	0	90.89	78.34	12.55	Both
chr1	4	1433475	1433550	Ala	TGC	0	0	90.89	78.34	12.55	Both
chr2	2	487057	487132	Ala	TGC	0	0	90.89	78.34	12.55	Both

chr1	17	3089651	3089727	Arg	ACG	0	0	87.10	72.06	15.04	Both
chr1	18	3089788	3089864	Arg	ACG	0	0	87.10	72.06	15.04	Both

chr1	23	3975948	3975873	Arg	CCG	0	0	82.41	60.01	22.40	Both

chr1	49	1225859	1225785	Arg	CCT	0	0	72.32	45.54	26.78	Both

chr1	5	1614340	1614416	Arg	TCT	0	0	86.86	56.37	30.49	Both

chr1	14	2970119	2970194	Asn	GTT	0	0	85.87	63.05	22.82	Both
chr1	15	2970284	2970359	Asn	GTT	0	0	85.87	63.05	22.82	Both

chr1	43	2636585	2636509	Asp	GTC	0	0	95.34	76.86	18.48	Both
chr1	45	2636287	2636211	Asp	GTC	0	0	95.34	76.86	18.48	Both
chr1	7	1640584	1640660	Asp	GTC	0	0	95.34	76.86	18.48	Both

chr2	4	1324168	1324241	Cys	GCA	0	0	56.83	35.77	21.06	Both
chr1	38	2922849	2922776	Cys	GCA	0	0	64.85	40.71	24.14	Both

chr1	52	575204	575128	Gln	TTG	0	0	75.81	54.65	21.16	Both

chr1	42	2636738	2636663	Glu	TTC	0	0	60.10	29.80	30.30	Both
chr1	44	2636444	2636369	Glu	TTC	0	0	60.10	29.80	30.30	Both

chr1	20	3166075	3166149	Gly	CCC	0	0	61.13	32.99	28.14	Eufind

chr1	36	2923174	2923099	Gly	GCC	0	0	89.05	65.61	23.44	Both
chr1	37	2923039	2922964	Gly	GCC	0	0	89.05	65.61	23.44	Both

chr1	29	3829969	3829896	Gly	TCC	0	0	82.17	64.72	17.45	Both

chr1	8	2207918	2207993	His	GTG	0	0	80.89	58.58	22.31	Both

chr1	26	3834604	3834528	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr1	3	1433364	1433440	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr1	33	3627293	3627217	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr2	1	486946	487022	Ile	GAT	0	0	93.29	71.17	22.12	Both

chr1	50	1112378	1112294	Leu	CAA	0	0	75.09	47.34	27.75	Both

chr1	10	2230084	2230170	Leu	CAG	0	0	69.58	43.74	25.84	Both
chr1	11	2230328	2230414	Leu	CAG	0	0	76.78	44.13	32.65	Both

chr1	2	1396551	1396635	Leu	GAG	0	0	63.68	32.34	31.34	Both
chr2	7	1040466	1040382	Leu	GAG	0	0	65.46	32.83	32.63	Both

chr1	46	2509522	2509436	Leu	TAG	0	0	77.10	51.49	25.61	Both

chr1	53	127486	127411	Lys	CTT	0	0	94.68	68.65	26.03	Both

chr1	21	3305048	3305123	Lys	TTT	0	0	92.38	75.15	17.23	Both

chr1	39	2782762	2782686	Met	CAT	0	0	86.01	58.68	27.33	Both
chr1	9	2216305	2216381	Met	CAT	0	0	86.01	58.68	27.33	Both
chr2	6	2406760	2406685	Met	CAT	0	0	86.24	69.82	16.42	Both
chr1	51	898688	898612	Met	CAT	0	0	88.36	69.62	18.74	Both

chr1	1	145379	145454	Phe	GAA	0	0	87.37	72.82	14.55	Both

chr1	22	3583348	3583424	Pro	CGG	0	0	81.43	57.93	23.50	Both

chr1	12	2304349	2304425	Pro	GGG	0	0	81.38	60.95	20.43	Both

chr1	48	1604119	1604043	Pro	TGG	0	0	88.66	63.17	25.49	Both

chr1	24	3964396	3964326	Ser	CGA	0	0	26.60	12.34	14.26	Eufind
chr1	35	3119202	3119112	Ser	CGA	0	0	69.83	37.98	31.85	Both

chr1	40	2700279	2700186	Ser	GCT	0	0	69.97	43.69	26.28	Both

chr2	3	518898	518987	Ser	GGA	0	0	75.69	47.05	28.64	Both

chr1	19	3097245	3097332	Ser	TGA	0	0	78.34	41.34	37.00	Both

chr1	16	3076047	3076122	Thr	CGT	0	0	88.22	73.48	14.74	Both

chr1	30	3829871	3829797	Thr	GGT	0	0	90.12	63.72	26.40	Both

chr1	32	3724935	3724860	Thr	TGT	0	0	81.30	65.65	15.65	Both

chr1	31	3828484	3828409	Trp	CCA	0	0	84.85	64.79	20.06	Both

chr1	28	3830098	3830013	Tyr	GTA	0	0	66.50	39.10	27.40	Both

chr1	13	2818426	2818500	Val	CAC	0	0	91.15	67.86	23.29	Both

chr1	47	2316995	2316919	Val	GAC	0	0	91.08	63.95	27.13	Both
chr2	5	2727288	2727212	Val	GAC	0	0	91.08	63.95	27.13	Both

chr1	6	1637007	1637082	Val	TAC	0	0	93.03	70.11	22.92	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.