tRNAscan-SE Analysis of the Burkholderia pseudomallei K96243 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chr1.trna41-AlaGGC Sc: 86.46  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAG...........GtCGGGAGTTCGATCCTCCTCCGCTCCACCA chr1.trna25-AlaCGC Sc: 84.28  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chr2.trna2-AlaTGC Sc: 90.89  
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chr1.trna4-AlaTGC Sc: 90.89  
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chr1.trna34-AlaTGC Sc: 90.89  
GGGGGCATAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCTGCCTCCACCA chr1.trna27-AlaTGC Sc: 90.89  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGCTGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGCCAGCCGCGCCA chr1.trna18-ArgACG Sc: 87.10  
GCGGCTGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGCCAGCCGCGCCA chr1.trna17-ArgACG Sc: 87.10  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAAT.GGAtA.GAGTACTGCCCTCCGAAGGCAGGG...........GtTGCTGGTTCGATCCCAGCCGGGCGCGCCA chr1.trna23-ArgCCG Sc: 82.41  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTCCCCGTAGTTCAAT.GGAtA.GAACAAGCGCCTCCTAAGCGCTAG...........A.TACAGGTTCGATTCCTGTCGGGGGGACCA chr1.trna49-ArgCCT Sc: 72.32  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CCGCCCTTAGCTCAGTCGGAtA.GAGCAACGGCCTTCTAAGCCGTAG...........GtCACACGTTCGAATCGTGTAGGGCGGGCCA chr1.trna5-ArgTCT Sc: 86.86  



Asn tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAG...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA chr1.trna15-AsnGTT Sc: 85.87  
TCCCCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAG...........GtCCCTGGTTCGAGCCCAGGTCGGGGAGCCA chr1.trna14-AsnGTT Sc: 85.87  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr1.trna7-AspGTC Sc: 95.34  
GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr1.trna45-AspGTC Sc: 95.34  
GGAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCTCCGCCA chr1.trna43-AspGTC Sc: 95.34  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGCGATAGCAAAGCGGTT.ATGCAGCGGCCTGCAAAGCCGTGT...........AGGCCGGTTCGACTCCGGCTCGCGCCTCCA chr1.trna38-CysGCA Sc: 64.85  
GGCGCGGTAGCAAAGCGGTT.ATGCGGCGGCCTGCAAAGCCGCTC...........AGGTCGGTTCGACTCCGGCTCGCGCCTCCA chr2.trna4-CysGCA Sc: 56.83  



Gln tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGAGTCGCCAAGTTGGTtAAGGCACCGGATTTTGATTCCGGCA...........TgCGAGGGTTCGAGTCCTTCCTCCCCTGCCA chr1.trna52-GlnTTG Sc: 75.81  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr1.trna44-GluTTC Sc: 60.10  
GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr1.trna42-GluTTC Sc: 60.10  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTCTCCCGCTCCA chr1.trna37-GlyGCC Sc: 89.05  
GCGGGAGTAGCTCAGTTGGT.A.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTCTCCCGCTCCA chr1.trna36-GlyGCC Sc: 89.05  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTCGTATAAT.GGCcA.TTACCTCAGCTTCCCAAGCTGATG...........A.CGTGGGTTCGATTCCCATCGCCCGCTCCA chr1.trna20-GlyCCC Sc: 61.13  

>>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAAT.GGT.A.GAGCAGAAGCCTTCCAAGCTTACG...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA chr1.trna29-GlyTCC Sc: 82.17  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTGTAGCTCAGTTGGTAGAGTCCAGGATTGTGATTCCTGTT...........GtCGTGGGTTCGAGTCCCATCAGCCACCCCA chr1.trna8-HisGTG Sc: 80.89  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr2.trna1-IleGAT Sc: 93.29  
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr1.trna33-IleGAT Sc: 93.29  
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr1.trna3-IleGAT Sc: 93.29  
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr1.trna26-IleGAT Sc: 93.29  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGT.GGC.GAAA....GCCG.TGCGAGTTCGAGTCTCGC.CGTCGGCACCA chr2.trna7-LeuGAG Sc: 65.46  
GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGT.GGC.GAAA....GCTG.TGCGAGTTCGAGTCTCGC.CGTCGGCACCA chr1.trna2-LeuGAG Sc: 63.68  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGC.GGTGGCAA...CACCG.TGGAGGTTCGAGTCCTCT.CCTGGGCACCA chr1.trna11-LeuCAG Sc: 76.78  
>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGAAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTG.GCAA....CACTgTGGAGGTTCGAGTCCTCT.CTTGGGCACCA chr1.trna10-LeuCAG Sc: 69.58  

>>>>>>>..>>>...........<<<..>>>>.......<<<<...>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGTGAGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGAC.GCCCGCAA...GGGCG.TGCCGGTTCGAGTCCGGC.CTCACGCACCA chr1.trna46-LeuTAG Sc: 77.10  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGTGAAATTGGTaGACGCAGGGGACTCAAAATCCCCC.GCC.GCAA....GGCG.TGCCGGTTCGATTCCGGC.CCTGGGCACCA chr1.trna50-LeuCAA Sc: 75.09  




Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAG...........GtCGAGTGTTCGAGTCACTCACGCCCCACCA chr1.trna53-LysCTT Sc: 94.68  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCACTGGTTCGAATCCAGTACGGCCTACCA chr1.trna21-LysTTT Sc: 92.38  



Met tRNAs


>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGCGAATTAGCTCAGTC.GGTtA.GAGCGACGGAATCATAATCCGCAG...........GtCCGGGGTTCGAGTCCCTGATTCGCCACCA chr1.trna51-MetCAT Sc: 88.36  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAGG..GGTtA.GAGCAGTCGACTCATAATCGATTG...........GtCGCGGGTTCGAAACCCGCCGGGCCCACCA chr2.trna6-MetCAT Sc: 86.24  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTACCCCCGCAACCA chr1.trna9-MetCAT Sc: 86.01  
CGCGGGGTGGAGCAGTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTACCCCCGCAACCA chr1.trna39-MetCAT Sc: 86.01  



Phe tRNAs



>>>>.>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<....
GGCCCGGTAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGGTGGTTCGATTCCGCCCCAGGCCACCA chr1.trna1-PheGAA Sc: 87.37  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGTACCTGCATGGGGTGCAGGTG...........GtCGGAGGTTCAAATCCTCTCGCCCCGACCA chr1.trna12-ProGGG Sc: 81.38  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCTTAGCCtGGTAGAGCGCTACGTTCGGGACGTAGAG...........GcCGGAGGTTCGAATCCTCTCACCCCGACCA chr1.trna22-ProCGG Sc: 81.43  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTAGCGCAGCCtGGTAGCGCATCTGATTTGGGATCAGAGG...........GtCGTAGGTTCGAATCCTATCGCTCCGACCA chr1.trna48-ProTGG Sc: 88.66  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>...............<<<.>>>>>.......<<<<<..>>>>>>.........<<<<<<...>>>>>.......<<<<<...<<<<<<<....
GGAGAGATGGATGAGTGGTttA....AGTCGCACGCCTGGAAAGCGTGT.ATAGGTGAAA.....GCCTAT..CGGGGGTTCGAATCCCCC...TCTCTCCGCCA chr2.trna3-SerGGA Sc: 75.69  

>>>>>>>..>>>...............<<<.>>>>>.......<<<<<..>>>>>>.........<<<<<<...>>>>>.......<<<<<...<<<<<<<....
GGAAAGGTGGCAGAGAGGTcgA....ATGCGCCGGACTCGAAATCCGGT.ATACGGTTATa....CCGTAT..CGTGGGTTCGAATCCCAC...CCTTTCCGCCA chr1.trna35-SerCGA Sc: 69.83  
>>>>.>>........................>>>>>.......<<<<<..........................>>>>>.......<<<<<...<<.<<<<....
GCGCATG.A....AAT.GT..A..ttCTCCACTGCCCTCCGAAGGCAGGG.....................GtTGCTGGTTCGATCCCAGC...CGGGCGCGCCA chr1.trna24-SerCGA Sc: 26.60  

>>>>>>>..>>>...............<<<.>>>>>.......<<<<<..>>>>>...........<<<<<...>>>>>.......<<<<<...<<<<<<<....
GGAAGCGTGGCCGAGTGGTttA....AGGCACTGGTCTTGAAAACCAGC.GACGG.GCAA......CCGTC..CGTGAGTTCGAATCTCAC...CGCTTCCGCCA chr1.trna19-SerTGA Sc: 78.34  


>>>>>>>..>>>...............<<<.>>>>>.......<<<<<..>>.>>...........<<.<<...>>>>>.......<<<<<...<<<<<<<....
GGAGACGTGGCCGAGAGGTcgA....AGGCACTCCCCTGCTAAGGGAGCATCTGGGCCAAa....ACCTGGAtCGAGGGTTCGAATCCCTC...CGTCTCCGCCA chr1.trna40-SerGCT Sc: 69.97  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCATGTGGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGGCAGTTCGATCCTGCCCATGGGCACCA chr1.trna30-ThrGGT Sc: 90.12  

>>>>>.>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<.<<<<<....
GCCGGTGTAGCTCAGTTGGTA.GAGCAGCGCATTCGTAATGCGAAG...........GtCGGAAGTTCGAGTCTTCTCTCCGGCACCA chr1.trna16-ThrCGT Sc: 88.22  

>>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<....
GCCGGCTTAGCTCATCTGGTA.GAGCAGTTGATTTGTAATCATCAG...........GtGGCGGGTTCGAGTCCTGCAGCCGGCACCA chr1.trna32-ThrTGT Sc: 81.30  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTATAGCTCAACTGGCAGAGCGTCGGTCTCCAAAACCGAAG...........GtTGGGGGTTCGATTCCCTCTGCCCCTGCCA chr1.trna31-TrpCCA Sc: 84.85  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGAGGGGTGCCCGAGTGGCtaA.AGGGGGCAGACTGTAAATCTGTTGGCTTAC....GCCTaCGTTGGTTCGAATCCAAC.CTCCTCCACCA chr1.trna28-TyrGTA Sc: 66.50  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCTCGTAGCTCAGTTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAATCCAATCGAGCCTACCA chr2.trna5-ValGAC Sc: 91.08  
AGGCTCGTAGCTCAGTTGGTtA.GAGCACCACCTTGACATGGTGGGG...........GtCGTTGGTTCGAATCCAATCGAGCCTACCA chr1.trna47-ValGAC Sc: 91.08  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGGTTAGCTCAGC.GGT.A.GAGCACTGCCTTCACACGGCAGGG...........GtCACTGGTTCGATCCCAGTACCGCCCACCA chr1.trna13-ValCAC Sc: 91.15  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGCTTAGCTCAGTTGGT.A.GAGCGGCGCCCTTACAAGGCGTAG...........GtCGGGAGTTCGAGCCTCTCAGCACCCACCA chr1.trna6-ValTAC Sc: 93.03

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.