tRNAscan-SE Analysis of the Burkholderia mallei ATCC 23344 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr1	20	2885283	2885208	View	Ala	CGC	0	0	84.28	68.33	15.95	Both

chr1	34	1661599	1661524	View	Ala	GGC	0	0	86.46	68.18	18.28	Both

chr1	27	2676133	2676058	View	Ala	TGC	0	0	90.89	78.34	12.55	Both
chr1	31	1883498	1883423	View	Ala	TGC	0	0	90.89	78.34	12.55	Both
chr2	3	556655	556730	View	Ala	TGC	0	0	90.89	78.34	12.55	Both
chr2	5	888169	888244	View	Ala	TGC	0	0	90.89	78.34	12.55	Both

chr1	13	2184882	2184958	View	Arg	ACG	0	0	87.10	72.06	15.04	Both
chr1	14	2185018	2185094	View	Arg	ACG	0	0	87.10	72.06	15.04	Both

chr1	18	3109428	3109503	View	Arg	CCG	0	0	82.41	60.01	22.40	Both

chr1	45	527853	527779	View	Arg	CCT	0	0	72.32	45.54	26.78	Both

chr2	8	909390	909314	View	Arg	TCT	0	0	86.86	56.37	30.49	Both

chr1	43	534815	534740	View	Asn	GTT	0	0	85.87	63.05	22.82	Both
chr1	44	534650	534575	View	Asn	GTT	0	0	85.87	63.05	22.82	Both

chr1	36	1661216	1661140	View	Asp	GTC	0	0	95.34	76.86	18.48	Both
chr1	39	1512267	1512191	View	Asp	GTC	0	0	95.34	76.86	18.48	Both

chr2	7	1308732	1308659	View	Cys	GCA	0	0	56.83	35.77	21.06	Both
chr1	5	581808	581881	View	Cys	GCA	0	0	64.85	40.71	24.14	Both

chr1	19	3214598	3214674	View	Gln	TTG	0	0	75.81	54.65	21.16	Both

chr1	35	1661373	1661298	View	Glu	TTC	0	0	60.10	29.80	30.30	Both

chr1	16	2251487	2251561	View	Gly	CCC	0	0	61.13	32.99	28.14	Eufind

chr1	3	581483	581558	View	Gly	GCC	0	0	89.05	65.61	23.44	Both
chr1	4	581618	581693	View	Gly	GCC	0	0	89.05	65.61	23.44	Both

chr1	23	2752206	2752133	View	Gly	TCC	0	0	82.17	64.72	17.45	Both

chr1	7	1289565	1289640	View	His	GTG	0	0	80.89	58.58	22.31	Both

chr1	30	1883609	1883533	View	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr2	2	556544	556620	View	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr2	4	888058	888134	View	Ile	GAT	0	0	93.29	71.17	22.12	Both

chr1	42	684998	684914	View	Leu	CAA	0	0	75.09	47.34	27.75	Both

chr1	9	1315394	1315480	View	Leu	CAG	0	0	69.58	43.74	25.84	Both
chr1	10	1317229	1317315	View	Leu	CAG	0	0	76.78	44.13	32.65	Both

chr1	29	1920437	1920353	View	Leu	GAG	0	0	63.68	32.34	31.34	Both
chr2	9	634270	634186	View	Leu	GAG	0	0	65.46	32.83	32.63	Both

chr1	37	1534984	1534898	View	Leu	TAG	0	0	77.10	51.49	25.61	Both

chr1	47	144090	144015	View	Lys	CTT	0	0	94.68	68.65	26.03	Both

chr1	12	2178985	2179060	View	Lys	TTT	0	0	92.38	75.15	17.23	Both

chr1	32	1808633	1808557	View	Met	CAT	0	0	86.01	58.68	27.33	Both
chr1	8	1300504	1300580	View	Met	CAT	0	0	86.01	58.68	27.33	Both
chr2	1	329291	329366	View	Met	CAT	0	0	86.24	69.82	16.42	Both
chr1	46	285516	285440	View	Met	CAT	0	0	88.36	69.62	18.74	Both

chr1	1	161897	161972	View	Phe	GAA	0	0	87.37	72.82	14.55	Both

chr1	17	2629066	2629142	View	Pro	CGG	0	0	81.43	57.93	23.50	Both

chr1	6	1130046	1130122	View	Pro	GGG	0	0	81.38	60.95	20.43	Both

chr1	41	830691	830615	View	Pro	TGG	0	0	88.66	63.17	25.49	Both

chr1	28	2204645	2204555	View	Ser	CGA	0	0	69.83	37.98	31.85	Both

chr1	33	1724813	1724720	View	Ser	GCT	0	0	69.97	43.69	26.28	Both

chr2	6	1959399	1959310	View	Ser	GGA	0	0	75.69	47.05	28.64	Both

chr1	15	2192475	2192562	View	Ser	TGA	0	0	78.34	41.34	37.00	Both

chr1	2	502561	502636	View	Thr	CGT	0	0	88.22	73.48	14.74	Both

chr1	24	2752108	2752034	View	Thr	GGT	0	0	90.12	63.72	26.40	Both

chr1	21	2790831	2790756	View	Thr	TGT	0	0	81.30	65.65	15.65	Both

chr1	25	2750721	2750646	View	Trp	CCA	0	0	83.72	63.67	20.05	Both

chr1	22	2752335	2752250	View	Tyr	GTA	0	0	66.50	39.10	27.40	Both

chr1	26	2676245	2676168	View	Undet	???	0	0	83.88	64.34	19.54	Eufind

chr1	11	1847464	1847538	View	Val	CAC	0	0	91.15	67.86	23.29	Both

chr1	40	1140923	1140847	View	Val	GAC	0	0	91.08	63.95	27.13	Both

chr1	38	1515831	1515756	View	Val	TAC	0	0	93.03	70.11	22.92	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.