tRNAscan-SE Analysis of the Buchnera sp Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna1 (76348-76423)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (76381-76383)	Score: 75.81
Seq: GGGGCTATAGCTCATTTGGTAGAGCGCTTGCATGGCATGCAAGATGtCAGCGGTTCGATTCCGCTTAGCTCCACGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (275731-275803)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (275764-275766)	Score: 84.55
Seq: GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCAATCCCGCTTAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (443375-443448)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (443409-443411)	Score: 78.83
Seq: GCATCCGTAGCTCAGTTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCGGAGGTTCGAATCCTTCCGGATGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (626009-625936)	Length: 74 bp
Type: Arg	Anticodon: CCG at 35-37 (625975-625973)	Score: 74.19
Seq: GCGCTCGTAGCTCAGTTGGAtAGAGCGCTACCCTCCGAAGGTAGAGGtATCAGGTTCAAATCCTGTCGAGCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<.

chr.trna17 (535783-535710)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (535749-535747)	Score: 85.95
Seq: GCGTTCTTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCACAGGTTCAAATCCTGTAGAACGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (591892-591820)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (591859-591857)	Score: 78.54
Seq: TCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGtCACTGGTTCGAATCCAGTCGGAGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (277898-277971)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (277932-277934)	Score: 84.64
Seq: GGTGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (449130-449056)	Length: 75 bp
Type: Gln	Anticodon: TTG at 34-36 (449097-449095)	Score: 78.48
Seq: TGGGGTATAGCCAAGTGGTtAAGGCACCGGTTTTTGATACCGGCAtCCCTGGTTCGAATCCAGGTACCCCAGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (542687-542615)	Length: 73 bp
Type: Glu	Anticodon: TTC at 35-37 (542653-542651)	Score: 50.21
Seq: GTCCCCTTCGTCTAGAGGTctAGGACATCGCCCTTTCACGGCGGCAACAGGGGTTCAAATCCCCTAGGGGACG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (610164-610239)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (610197-610199)	Score: 93.94
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCAAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (48648-48577)	Length: 72 bp
Type: Gly	Anticodon: TCC at 34-36 (48615-48613)	Score: 56.58
Seq: GCGGACATCGTATAATGGCtATTACCTCAGCCTTCCAAGCTGATGACGCGGGTTCAATTCCCGCTGTCCGCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna13 (625906-625831)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (625873-625871)	Score: 84.98
Seq: GTGGCTATAGCTCAGTTGGTAGAGTGCTGGATTGTGATTCCAGTGGtCATGGGTTCAAGTCCCATTAGCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (275640-275716)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (275674-275676)	Score: 87.75
Seq: AGGCTTGTAGCTCAGATGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGTGGTTCAATTCCACTCAGGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (420160-420075)	Length: 86 bp
Type: Leu	Anticodon: GAG at 35-37 (420126-420124)	Score: 55.72
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGTGCCGAATaGGCGTGTGGGTTCGAGTCCCATTCTCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna24 (364610-364527)	Length: 84 bp
Type: Leu	Anticodon: TAA at 35-37 (364576-364574)	Score: 72.83
Seq: GCCCGGATGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGCCTTATGGCTtTGCGGGTTCAAGTCCCGCTCCGGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna20 (449304-449223)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (449270-449268)	Score: 66.60
Seq: GCGGGAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGAAAGGTGTGCGAGTTCAAATCTCGCCTCCCGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna27 (74544-74472)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (74511-74509)	Score: 90.12
Seq: GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCAAATCCTGCACGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (592027-592099)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (592060-592062)	Score: 84.29
Seq: GGCCCTTTAGCTCAGTGGTaAGAGCAGGCGACTCATAATCGCTTGGtCGCTGGTTCAAATCCAGCAAGGGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (504212-504136)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (504178-504176)	Score: 85.85
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna19 (449392-449316)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (449358-449356)	Score: 87.46
Seq: GGCTACGTAGCTCAGTCGGTtAGAGCACAGCACTCATAACGCTGGGGtCATGGGTTCGAGTCCCGTCGTAGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (18101-18029)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (18068-18066)	Score: 80.83
Seq: GCCCGGATAGCTCAGTTGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGGTGGTTCAATTCCGCCTCCGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (625794-625718)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (625760-625758)	Score: 90.86
Seq: CGGCGAATAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTAGGtCAGAGGTTCAAATCCTCTTTCGCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (364695-364622)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (364663-364661)	Score: 27.65
Seq: GGCGTGTTGACAGATTGGATATGTAGCGGACTGCAAATCCGTGCAACCCGGTTCGATTCCGGGATACGCCTCTA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (443266-443357)	Length: 92 bp
Type: Ser	Anticodon: GCT at 35-37 (443300-443302)	Score: 69.61
Seq: GGTGAGATGGCCGAGAGGAttAAGGCGCTCCCCTGCTAAGGGAGTATGCAGAAATACCTGCATCGAGGGTTCGAATCCCTCTCTCACCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna8 (574865-574949)	Length: 85 bp
Type: Ser	Anticodon: GGA at 35-37 (574899-574901)	Score: 57.12
Seq: GGTGAGGTGTCCGAGAGGCttAAGGAGCACGCCTGGAAAGCGTGTATATGGAAACGTATCAAGGGTTCGAATCCCTTTCTCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna5 (364866-364950)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (364900-364902)	Score: 65.55
Seq: GGAGAGGTGGCCGAGCGGTttAAGGCAGCGGTCTTGAAAACCGCCGACGAGAAATCGTCCGAGAGTTCGAATCTCTCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna31 (48561-48489)	Length: 73 bp
Type: Thr	Anticodon: GGT at 34-36 (48528-48526)	Score: 76.26
Seq: GCTGATATGGCTCAGTAGGTAGAGCACACCCTTGGTAAGGGTGAGGtCCCCAGTTCAATCCTGGGTATCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (48843-48771)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (48810-48808)	Score: 80.39
Seq: GCCGGCTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGtCACCAGTTCAATTCCGGTAGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.

chr.trna11 (633809-633736)	Length: 74 bp
Type: Trp	Anticodon: CCA at 35-37 (633775-633773)	Score: 69.30
Seq: AGGGGTGTAGTTCAATTtGGTAGAGCATCGGTCTCCAAAACCGAAAGtTGTAGGTTCAAATCCTTCCACCCCTG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chr.trna29 (48755-48671)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (48721-48719)	Score: 65.25
Seq: GGTGGGGTTCCCGAGCGGCcaAAGGGAGCAGACTGTAAATCTGCCGTCATAGACTtCGAAGGTTCGAATCCTTCTCCCACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna25 (117081-117008)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (117047-117045)	Score: 68.52
Seq: ACGTTCGTAGCTCAATTGGTtAGAGCGCTACCATGACATGGTAGAAGtTAGTGGTTCAAGTCCACTCGAACGTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (74645-74573)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (74612-74610)	Score: 84.59
Seq: GGGTGATTAGCTCAGTTGGTAGAGCTCCTCCTTTACACGGAGGAAGtCGGCGGTTCGAGTCCGTCATCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.