tRNAscan-SE Analysis of the Buchnera sp Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	1	76348	76423	View	Ala	GGC	0	0	75.81	57.57	18.24	Both

chr	3	275731	275803	View	Ala	TGC	0	0	84.55	67.56	16.99	Both

chr	7	443375	443448	View	Arg	ACG	0	0	78.83	56.44	22.39	Both

chr	12	626009	625936	View	Arg	CCG	0	0	74.19	50.03	24.16	Both

chr	17	535783	535710	View	Arg	TCT	0	0	85.95	61.33	24.62	Both

chr	15	591892	591820	View	Asn	GTT	0	0	78.54	54.05	24.49	Both

chr	4	277898	277971	View	Asp	GTC	0	0	84.64	66.23	18.41	Both

chr	21	449130	449056	View	Gln	TTG	0	0	78.48	46.33	32.15	Both

chr	16	542687	542615	View	Glu	TTC	0	0	50.21	25.34	24.87	Both

chr	10	610164	610239	View	Gly	GCC	0	0	93.94	69.77	24.17	Both

chr	30	48648	48577	View	Gly	TCC	0	0	56.58	27.55	29.03	Eufind

chr	13	625906	625831	View	His	GTG	0	0	84.98	61.02	23.96	Both

chr	2	275640	275716	View	Ile	GAT	0	0	87.75	64.01	23.74	Both

chr	22	420160	420075	View	Leu	GAG	0	0	55.72	29.64	26.08	Both

chr	24	364610	364527	View	Leu	TAA	0	0	72.83	38.28	34.55	Both

chr	20	449304	449223	View	Leu	TAG	0	0	66.60	40.61	25.99	Both

chr	27	74544	74472	View	Lys	TTT	0	0	90.12	68.88	21.24	Both

chr	9	592027	592099	View	Met	CAT	0	0	84.29	60.75	23.54	Both
chr	18	504212	504136	View	Met	CAT	0	0	85.85	60.06	25.79	Both
chr	19	449392	449316	View	Met	CAT	0	0	87.46	70.96	16.50	Both

chr	32	18101	18029	View	Phe	GAA	0	0	80.83	58.65	22.18	Both

chr	14	625794	625718	View	Pro	TGG	0	0	90.86	65.08	25.78	Both

chr	23	364695	364622	View	Pseudo	GCA	0	0	27.65	-0.88	28.53	Both

chr	6	443266	443357	View	Ser	GCT	0	0	69.61	38.85	30.76	Both

chr	8	574865	574949	View	Ser	GGA	0	0	57.12	23.92	33.20	Both

chr	5	364866	364950	View	Ser	TGA	0	0	65.55	31.50	34.05	Both

chr	31	48561	48489	View	Thr	GGT	0	0	76.26	45.22	31.04	Both

chr	28	48843	48771	View	Thr	TGT	0	0	80.39	63.20	17.19	Both

chr	11	633809	633736	View	Trp	CCA	0	0	69.30	53.91	15.39	Both

chr	29	48755	48671	View	Tyr	GTA	0	0	65.25	37.53	27.72	Both

chr	25	117081	117008	View	Val	GAC	0	0	68.52	37.72	30.80	Both

chr	26	74645	74573	View	Val	TAC	0	0	84.59	63.37	21.22	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.