tRNAscan-SE Analysis of the Buchnera sp Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCATTTGGTAGAGCGCTTGCATGGCATGCAAGAT...........GtCAGCGGTTCGATTCCGCTTAGCTCCACGA chr.trna1-AlaGGC Sc: 75.81  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCAATCCCGCTTAGCTCCA... chr.trna3-AlaTGC Sc: 84.55  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCATCCGTAGCTCAGTTGGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCGGAGGTTCGAATCCTTCCGGATGCA... chr.trna7-ArgACG Sc: 78.83  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<....
GCGCTCGTAGCTCAGTTGGAtAGAGCGCTACCCTCCGAAGGTAGAG...........GtATCAGGTTCAAATCCTGTCGAGCGCA... chr.trna12-ArgCCG Sc: 74.19  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTTCTTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTAG...........GtCACAGGTTCAAATCCTGTAGAACGCA... chr.trna17-ArgTCT Sc: 85.95  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCGAATCCAGTCGGAGGAG... chr.trna15-AsnGTT Sc: 78.54  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGTCCCGTCCGCACCG... chr.trna4-AspGTC Sc: 84.64  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGTGTTGACAGATTGGAT.ATGTAGCGGACTGCAAATCCGTGC...........AACCCGGTTCGATTCCGGGATACGCCTCTA chr.trna23-CysGCA Sc: 27.65  Pseudo



Gln tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TGGGGTATAGCCAAGTGGTtA.AGGCACCGGTTTTTGATACCGGC...........AtCCCTGGTTCGAATCCAGG.TACCCCAGCCA chr.trna21-GlnTTG Sc: 78.48  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGAGGTctA.GGACATCGCCCTTTCACGGCGGCA...........ACAGGGGTTCAAATCCCCTAGGGGACG... chr.trna16-GluTTC Sc: 50.21  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCAAGTCTCGTTTCCCGCTCCA chr.trna10-GlyGCC Sc: 93.94  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGACATCGTATAAT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.CGCGGGTTCAATTCCCGCTGTCCGCT... chr.trna30-GlyTCC Sc: 56.58  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTATAGCTCAGTTGGTAGAGTGCTGGATTGTGATTCCAGTG...........GtCATGGGTTCAAGTCCCATTAGCCACCCCA chr.trna13-HisGTG Sc: 84.98  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCTTGTAGCTCAGATGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAATTCCACTCAGGCCTACCA chr.trna2-IleGAT Sc: 87.75  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGAGGTGGTGGAATTGGTaGACACGCTATCTTGAGGGGGTAGT.GCCGAATa....GGCG.TGTGGGTTCGAGTCCCAT.TCTCGGTACCA chr.trna22-LeuGAG Sc: 55.72  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGAGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GCCGAAA.....GGTG.TGCGAGTTCAAATCTCGC.CTCCCGTA... chr.trna20-LeuTAG Sc: 66.60  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGATGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGCCTTAT.....GGCTtTGCGGGTTCAAGTCCCGC.TCCGGGTA... chr.trna24-LeuTAA Sc: 72.83  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCAAATCCTGCACGACCCA... chr.trna27-LysTTT Sc: 90.12  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTACGTAGCTCAGTC.GGTtA.GAGCACAGCACTCATAACGCTGGG...........GtCATGGGTTCGAGTCCCGTCGTAGCTACCA chr.trna19-MetCAT Sc: 87.46  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCAACCA chr.trna18-MetCAT Sc: 85.85  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCTTTAGCTCAGT..GGTaA.GAGCAGGCGACTCATAATCGCTTG...........GtCGCTGGTTCAAATCCAGCAAGGGCCA... chr.trna9-MetCAT Sc: 84.29  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCGGATAGCTCAGTTGGTAGAGCAGGGGACTGAAAATCCCCGT...........GtCGGTGGTTCAATTCCGCCTCCGGGCA... chr.trna32-PheGAA Sc: 80.83  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGAATAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTAG...........GtCAGAGGTTCAAATCCTCTTTCGCCGACCA chr.trna14-ProTGG Sc: 90.86  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGAGGTGTCCGAGAGGCttA.AGGAGCACGCCTGGAAAGCGTGT.ATATG..GAAA..CGTAT.CAAGGGTTCGAATCCCTT..TCTCACCA... chr.trna8-SerGGA Sc: 57.12  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGCGGTttA.AGGCAGCGGTCTTGAAAACCGCCGACGA...GAAA...TCGTCCGAGAGTTCGAATCTCTC..TCTCTCCG... chr.trna5-SerTGA Sc: 65.55  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGGCCGAGAGGAttA.AGGCGCTCCCCTGCTAAGGGAGT.ATGCAGAAATACCTGCAT.CGAGGGTTCGAATCCCTC..TCTCACCGCCA chr.trna6-SerGCT Sc: 69.61  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGATATGGCTCAGTAGGTAGAGCACACCCTTGGTAAGGGTGAG...........GtCCCCAGTTCAATCCTGGGTATCAGCA... chr.trna31-ThrGGT Sc: 76.26  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
GCCGGCTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCAATTCCGGTAGCCGGCA... chr.trna28-ThrTGT Sc: 80.39  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
AGGGGTGTAGTTCAATTtGGTAGAGCATCGGTCTCCAAAACCGAAA...........GtTGTAGGTTCAAATCCTTCCACCCCTG... chr.trna11-TrpCCA Sc: 69.30  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGTGGGGTTCCCGAGCGGCcaA.AGGGAGCAGACTGTAAATCTGCCGTCATA.....GACTtCGAAGGTTCGAATCCTTC.TCCCACCACCA chr.trna29-TyrGTA Sc: 65.25  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ACGTTCGTAGCTCAATTGGTtAGAGCGCTACCATGACATGGTAGAA...........GtTAGTGGTTCAAGTCCACTCGAACGTA... chr.trna25-ValGAC Sc: 68.52  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGATTAGCTCAGTTGGT.AGAGCTCCTCCTTTACACGGAGGAA...........GtCGGCGGTTCGAGTCCGTCATCACCCA... chr.trna26-ValTAC Sc: 84.59

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.