tRNAscan-SE Analysis of the Buchnera aphidicola Sg Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chr.trna1 (76793-76864)	Length: 72 bp
Type: Ala	Anticodon: GGC at 33-35 (76825-76827)	Score: 66.37
Seq: GGGGCTATAGCTCAGAGGCAGAGTTCTTGCATGGCATGCAAGATGtCGGCGGTTCGATTCCGCCTAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (277221-277293)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (277254-277256)	Score: 84.55
Seq: GGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCAATCCCGCTTAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (443463-443536)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (443497-443499)	Score: 78.83
Seq: GCATCCGTAGCTCAGTTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCGGAGGTTCGAATCCTTCCGGATGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (626706-626632)	Length: 75 bp
Type: Arg	Anticodon: CCG at 36-38 (626671-626669)	Score: 59.60
Seq: GCGCTCGTAGCTCATTTtGGAtAGAGCGCTATCTTCCGAAGGTAGAGGtATCAGGTTCAAATCCTGTCGAGCGCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<.

chr.trna17 (536684-536611)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (536650-536648)	Score: 87.08
Seq: GCGTTCTTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCACAGGTTCGAATCCTGTAGAACGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (592913-592841)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (592880-592878)	Score: 76.39
Seq: TCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGtCACTGGTTCGAGCCCAGTCAGGGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (279396-279469)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (279430-279432)	Score: 86.21
Seq: GGTGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAATCCCGTCCGCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (449701-449627)	Length: 75 bp
Type: Gln	Anticodon: TTG at 34-36 (449668-449666)	Score: 78.48
Seq: TGGGGTATAGCCAAGTGGTtAAGGCACCGGTTTTTGATACCGGCAtCCCTGGTTCGAATCCAGGTACCCCAGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (543523-543452)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (543490-543488)	Score: 54.19
Seq: GTCCCCTTCGTCTAGAGGTtAGGACATCGCCCTTTCACGGCGGCAACAGGGGTTCAAATCCCCTAGGGGACG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (611053-611128)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (611086-611088)	Score: 95.06
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAATCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (48768-48694)	Length: 75 bp
Type: Gly	Anticodon: TCC at 34-36 (48735-48733)	Score: 51.21
Seq: GCGGACATCGTATAATGGCtATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCAATTCCCGCTGCCCGCTCAA
Str: >>>>.>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<.<<<<....

chr.trna13 (626592-626518)	Length: 75 bp
Type: His	Anticodon: GTG at 34-36 (626559-626557)	Score: 75.35
Seq: GTGGCTATAGCTCAGTTGGTAGAGTTCTGGATTGTGATTCCAGTGGtCATGGGTTCAAATCCCATTAGCCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<...

chr.trna2 (277128-277204)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (277162-277164)	Score: 84.04
Seq: AGGCTTGTAGCTCAGATGGTaAGAGCGCACCCCTGATAAGGGTGAGGtCGGTGGTTCAACTCCACTCAGGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna24 (366201-366114)	Length: 88 bp
Type: Leu	Anticodon: TAA at 35-37 (366167-366165)	Score: 78.20
Seq: GCCCGGATGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGCTTTTAAAGCTtTGCGGGTTCAAGTCCCGCTCCGGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...<<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna20 (449823-449742)	Length: 82 bp
Type: Leu	Anticodon: TAG at 35-37 (449789-449787)	Score: 64.19
Seq: GCGGGAGTGGCGAAATAGGTaGACGCACCAGATTTAGGTTCTGGCGCCGTAAGGTGTGCGAGTTCAAATCTCGCCTCCCGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna27 (74838-74766)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (74805-74803)	Score: 88.02
Seq: GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCAAATCCTGCACGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (593047-593119)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (593080-593082)	Score: 82.99
Seq: GGCCCTTTAGCTCAGTGGTcAGAGCAGGCGACTCATAATCGCTTGGtCGCTGGTTCAAATCCAGCAAGGGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna19 (449909-449833)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (449875-449873)	Score: 83.34
Seq: GGCTACGTAGCTCAGTTGGTtAGAGCACAGCACTCATAACGCTGGGGtCATGGGTTCAATTCCCGTCGTAGCCACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (505458-505382)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (505424-505422)	Score: 85.85
Seq: CGCGGGGTGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna32 (18028-17956)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (17995-17993)	Score: 78.74
Seq: GCCCGGATAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGGTGGTTCAATTCCGCCTCCGGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (626486-626410)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (626452-626450)	Score: 88.28
Seq: CGGCGAATAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGGGtCAGGGGTTCAAATCCTCTTTCGCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (420666-420585)	Length: 82 bp
Type: Leu	Anticodon: GAG at 35-37 (420632-420630)	Score: 48.07
Seq: ACCGAGGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGATAGTGCCTTTAGGCATATGGGTTCAAGTCCCATCCTCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna23 (366289-366219)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (366257-366255)	Score: 31.44
Seq: GGCGTGTTGACAGATTGGCTATGTAGCGGACTGCAAATCCGTATAACCCGGTTCGATTCCGGGATACGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (443338-443430)	Length: 93 bp
Type: Ser	Anticodon: GCT at 35-37 (443372-443374)	Score: 73.52
Seq: GGTGAGATGGCCGAGAGGAttAAGGCGCTCCCCTGCTAAGGGAGTGTGCAGAAATAATCTGCATCGAGGGTTCGAATCCCTCTCTCACCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>.....<<<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna8 (575257-575341)	Length: 85 bp
Type: Ser	Anticodon: GGA at 35-37 (575291-575293)	Score: 60.46
Seq: GGTGAGATGTCCGAGAGGCttAAGGAACACGCCTGGAAAGCGTGTATATGGAAACGTATCAAGGGTTCGAATCCCTTTCTCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna5 (366450-366534)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (366484-366486)	Score: 66.45
Seq: GGAGAGGTGGCCGAGTGGTttAAGGCAGCGGTCTTGAAAACCGCCGATGAGCAATCATCCGAGAGTTCGAATCTCTCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chr.trna31 (48672-48600)	Length: 73 bp
Type: Thr	Anticodon: GGT at 34-36 (48639-48637)	Score: 77.20
Seq: GCTGATATGGCTCAGTAGGTAGAGCACACCCTTGGTAAGGGTGAGGtCCCCAGTTCAAACCTGGGTATCAGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (48942-48870)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (48909-48907)	Score: 83.41
Seq: GCCGGCTTAGCTCAGCAGGTAGAGCAACTGACTTGTAATCAGTAGGtCACCAGTTCGATTCCGGTAGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.

chr.trna11 (634428-634352)	Length: 77 bp
Type: Trp	Anticodon: CCA at 35-37 (634394-634392)	Score: 77.60
Seq: AGGGGTGTAGTTCAATTtGGTAGAGCATCGGTCTCCAAAACCGAAAGtTGTAGGTTCAAGTCCTTCCACCCCTGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna29 (48855-48774)	Length: 82 bp
Type: Tyr	Anticodon: GTA at 35-37 (48821-48819)	Score: 60.73
Seq: GGTGGGATTCCCGAGCGGCcaAAGGGAGCAGACTGTAAATCTGCCGTCTAAGACTtCGAAGGTTCGAATCCTTCTCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna25 (117461-117388)	Length: 74 bp
Type: Val	Anticodon: GAC at 35-37 (117427-117425)	Score: 62.95
Seq: ACGTTCGTAGCTCAATAGGTtAGAGCATTACCATGACATGGTAGAGGtTAGTGGTTCAAGTCCACTCGAACGTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna26 (74924-74849)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (74891-74889)	Score: 88.68
Seq: AGGTGATTAGCTCAGTTGGTAGAGCTCCTCCTTTACACGGAGGAAGtCGGCGGTTCGAGTCCGTCATCACCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.