tRNAscan-SE Analysis of the Buchnera aphidicola Sg Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	1	76793	76864	Ala	GGC	0	0	66.37	48.68	17.69	Both

chr	3	277221	277293	Ala	TGC	0	0	84.55	67.56	16.99	Both

chr	7	443463	443536	Arg	ACG	0	0	78.83	56.44	22.39	Both

chr	12	626706	626632	Arg	CCG	0	0	59.60	36.45	23.15	Both

chr	17	536684	536611	Arg	TCT	0	0	87.08	62.45	24.63	Both

chr	15	592913	592841	Asn	GTT	0	0	76.39	53.12	23.27	Both

chr	4	279396	279469	Asp	GTC	0	0	86.21	66.45	19.76	Both

chr	21	449701	449627	Gln	TTG	0	0	78.48	46.33	32.15	Both

chr	16	543523	543452	Glu	TTC	0	0	54.19	29.33	24.86	Both

chr	10	611053	611128	Gly	GCC	0	0	95.06	70.89	24.17	Both

chr	30	48768	48694	Gly	TCC	0	0	51.21	26.86	24.35	Eufind

chr	13	626592	626518	His	GTG	0	0	75.35	52.01	23.34	Both

chr	2	277128	277204	Ile	GAT	0	0	84.04	60.30	23.74	Both

chr	24	366201	366114	Leu	TAA	0	0	78.20	42.69	35.51	Both

chr	20	449823	449742	Leu	TAG	0	0	64.19	38.20	25.99	Both

chr	27	74838	74766	Lys	TTT	0	0	88.02	66.78	21.24	Both

chr	9	593047	593119	Met	CAT	0	0	82.99	59.45	23.54	Both
chr	19	449909	449833	Met	CAT	0	0	83.34	66.04	17.30	Both
chr	18	505458	505382	Met	CAT	0	0	85.85	60.06	25.79	Both

chr	32	18028	17956	Phe	GAA	0	0	78.74	56.55	22.19	Both

chr	14	626486	626410	Pro	TGG	0	0	88.28	65.43	22.85	Both

chr	22	420666	420585	Pseudo	GAG	0	0	48.07	8.24	39.83	Both

chr	23	366289	366219	Pseudo	GCA	0	0	31.44	2.93	28.51	Both

chr	6	443338	443430	Ser	GCT	0	0	73.52	41.08	32.44	Both

chr	8	575257	575341	Ser	GGA	0	0	60.46	23.56	36.90	Both

chr	5	366450	366534	Ser	TGA	0	0	66.45	29.60	36.85	Both

chr	31	48672	48600	Thr	GGT	0	0	77.20	46.16	31.04	Both

chr	28	48942	48870	Thr	TGT	0	0	83.41	66.21	17.20	Both

chr	11	634428	634352	Trp	CCA	0	0	77.60	62.19	15.41	Both

chr	29	48855	48774	Tyr	GTA	0	0	60.73	28.44	32.29	Both

chr	25	117461	117388	Val	GAC	0	0	62.95	35.47	27.48	Both

chr	26	74924	74849	Val	TAC	0	0	88.68	64.61	24.07	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.