tRNAscan-SE Analysis of the Buchnera aphidicola Sg Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGA.GGCA.GAGTTCTTGCATGGCATGCAAGAT...........GtCGGCGGTTCGATTCCGCCTAGCTCCA... chr.trna1-AlaGGC Sc: 66.37  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGCTGGGA.GAGCGCCTGCCTTGCACGCAGGAG...........GtCAGCGGTTCAATCCCGCTTAGCTCCA... chr.trna3-AlaTGC Sc: 84.55  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCATCCGTAGCTCAGTT.GGAtAGAGTACTCGGCTACGAACCGAGCG...........GtCGGAGGTTCGAATCCTTCCGGATGCA... chr.trna7-ArgACG Sc: 78.83  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<....
GCGCTCGTAGCTCATTTtGGAtAGAGCGCTATCTTCCGAAGGTAGAG...........GtATCAGGTTCAAATCCTGTCGAGCGCA... chr.trna12-ArgCCG Sc: 59.60  



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTTCTTAGCTCAGCT.GGAtAGAGCAACGGCCTTCTAAGCCGTAG...........GtCACAGGTTCGAATCCTGTAGAACGCA... chr.trna17-ArgTCT Sc: 87.08  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCGAGCCCAGTCAGGGGAG... chr.trna15-AsnGTT Sc: 76.39  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAATCCCGTCCGCACCG... chr.trna4-AspGTC Sc: 86.21  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGTGTTGACAGATTGGCT.ATGTAGCGGACTGCAAATCCGTAT...........AACCCGGTTCGATTCCGGGATACGCCT... chr.trna23-CysGCA Sc: 31.44  Pseudo



Gln tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TGGGGTATAGCCAAGTGGTtA.AGGCACCGGTTTTTGATACCGGC...........AtCCCTGGTTCGAATCCAGG.TACCCCAGCCA chr.trna21-GlnTTG Sc: 78.48  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGAGGTtA.GGACATCGCCCTTTCACGGCGGCA...........ACAGGGGTTCAAATCCCCTAGGGGACG... chr.trna16-GluTTC Sc: 54.19  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGT.A.GAGCACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCGAATCTCGTTTCCCGCTCCA chr.trna10-GlyGCC Sc: 95.06  


>>>>.>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<.<<<<....
GCGGACATCGTATAAT.GGCtA.TTACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCAATTCCCGCTGCCCGCTCAA chr.trna30-GlyTCC Sc: 51.21  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTATAGCTCAGTTGGTAGAGTTCTGGATTGTGATTCCAGTG...........GtCATGGGTTCAAATCCCATTAGCCAC.CCA chr.trna13-HisGTG Sc: 75.35  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCTTGTAGCTCAGATGGTaAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAACTCCACTCAGGCCTACCA chr.trna2-IleGAT Sc: 84.04  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
ACCGAGGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGATAGT.GCC.TTTA....GGCA.TATGGGTTCAAGTCCCAT.CCTCGGTA... chr.trna22-LeuGAG Sc: 48.07  Pseudo


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGAGTGGCGAAATAGGTaGACGCACCAGATTTAGGTTCTGGC.GCC.GTAA....GGTG.TGCGAGTTCAAATCTCGC.CTCCCGTA... chr.trna20-LeuTAG Sc: 64.19  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGATGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGCTTTTA....AAGCTtTGCGGGTTCAAGTCCCGC.TCCGGGTACCA chr.trna24-LeuTAA Sc: 78.20  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTCGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCAAATCCTGCACGACCCA... chr.trna27-LysTTT Sc: 88.02  



Met tRNAs


.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCAGCCCCCGCAACCA chr.trna18-MetCAT Sc: 85.85  
>>>>>>>..>>>>...........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTACGTAGCTCAGTT.GGTtA.GAGCACAGCACTCATAACGCTGGG...........GtCATGGGTTCAATTCCCGTCGTAGCCACTA chr.trna19-MetCAT Sc: 83.34  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCTTTAGCTCAGT..GGTcA.GAGCAGGCGACTCATAATCGCTTG...........GtCGCTGGTTCAAATCCAGCAAGGGCCA... chr.trna9-MetCAT Sc: 82.99  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCGGATAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGT...........GtCGGTGGTTCAATTCCGCCTCCGGGCA... chr.trna32-PheGAA Sc: 78.74  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGAATAGCGCAGCTtGGTAGCGCAACTGGTTTGGGACCAGTGG...........GtCAGGGGTTCAAATCCTCTTTCGCCGACCA chr.trna14-ProTGG Sc: 88.28  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGTCCGAGAGGCttA.AGGAACACGCCTGGAAAGCGTGT.ATATG..GAAA..CGTAT.CAAGGGTTCGAATCCCTT..TCTCACCA... chr.trna8-SerGGA Sc: 60.46  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTttA.AGGCAGCGGTCTTGAAAACCGCCGATGA...GCAA...TCATCCGAGAGTTCGAATCTCTC..TCTCTCCG... chr.trna5-SerTGA Sc: 66.45  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGGCCGAGAGGAttA.AGGCGCTCCCCTGCTAAGGGAGTGTGCAGAAATAA.TCTGCATCGAGGGTTCGAATCCCTC..TCTCACCGCCA chr.trna6-SerGCT Sc: 73.52  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGATATGGCTCAGTAGGTAGAGCACACCCTTGGTAAGGGTGAG...........GtCCCCAGTTCAAACCTGGGTATCAGCA... chr.trna31-ThrGGT Sc: 77.20  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
GCCGGCTTAGCTCAGCAGGTAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGCCGGCA... chr.trna28-ThrTGT Sc: 83.41  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
AGGGGTGTAGTTCAATTtGGTAGAGCATCGGTCTCCAAAACCGAAA...........GtTGTAGGTTCAAGTCCTTCCACCCCTGCCA chr.trna11-TrpCCA Sc: 77.60  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGTGGGATTCCCGAGCGGCcaA.AGGGAGCAGACTGTAAATCTGCCGTCTAA.....GACTtCGAAGGTTCGAATCCTTC.TCCCACCA... chr.trna29-TyrGTA Sc: 60.73  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ACGTTCGTAGCTCAATAGGTtAGAGCATTACCATGACATGGTAGAG...........GtTAGTGGTTCAAGTCCACTCGAACGTA... chr.trna25-ValGAC Sc: 62.95  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGTGATTAGCTCAGTTGGT.AGAGCTCCTCCTTTACACGGAGGAA...........GtCGGCGGTTCGAGTCCGTCATCACCTACCA chr.trna26-ValTAC Sc: 88.68

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.