tRNAscan-SE Analysis of the Buchnera aphidicola Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna1 (74987-75059)	Length: 73 bp
Type: Ala	Anticodon: GGC at 34-36 (75020-75022)	Score: 75.38
Seq: GGGGTTATAGCTCAATTGGTAGAGCGTTTGCATGGCATGCAAAGGGtTAGCGGTTCAAATCCGCTTAACTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna3 (268665-268737)	Length: 73 bp
Type: Ala	Anticodon: TGC at 34-36 (268698-268700)	Score: 80.49
Seq: GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCTTTGCACGCAAGAGGtCAGCGGTTCGATCCCGCTTAACTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna7 (424056-424129)	Length: 74 bp
Type: Arg	Anticodon: ACG at 35-37 (424090-424092)	Score: 76.86
Seq: GCATCCGTAGTTCAGTTGGAtAGAGCACTCGGCTACGAACCGAGAGGtCGGAGGTTCAAATCCTTCCGGATGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna12 (601237-601164)	Length: 74 bp
Type: Arg	Anticodon: CCG at 35-37 (601203-601201)	Score: 77.45
Seq: GCGCTTGTAGCTCAGTTGGAtAGAGCGCTACCCTCCGAAGGTAGAGGcCTCAGGTTCGAATCCTGTCAAGCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<.

chr.trna17 (504207-504134)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (504173-504171)	Score: 83.87
Seq: GCGCTCTTAGCTCAGATGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCATAGGTTCGAATCCTATAGAGCGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna15 (566520-566448)	Length: 73 bp
Type: Asn	Anticodon: GTT at 34-36 (566487-566485)	Score: 78.76
Seq: TCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGtCACTGGTTCGAATCCAGTCAGGGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna4 (270888-270961)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (270922-270924)	Score: 77.80
Seq: GGTGCGGTAGTTCAGATGGTtAGAATACTGGCCTGTCACGCCGGGGGtCGCGGGTTCAAGTCCCGTCCGCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna21 (429151-429081)	Length: 71 bp
Type: Gln	Anticodon: TTG at 33-35 (429119-429117)	Score: 68.71
Seq: TGGGATATAGCCAAGTGGTAAGGCACCGGTTTTTGATACCGGCAtCCCTGGTTCGAATCCAGGTATCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna16 (511260-511188)	Length: 73 bp
Type: Glu	Anticodon: TTC at 35-37 (511226-511224)	Score: 51.59
Seq: GTCCCCTTCGTCTAGAGGActAGGACATCGCCCTTTCACGGCGATAACAGGGGTTCAAATCCCCTAGGGGACA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna10 (584164-584236)	Length: 73 bp
Type: Gly	Anticodon: GCC at 34-36 (584197-584199)	Score: 81.31
Seq: GCGGGAATAGCTCAGTTGGTAGAGTACAACCTTGCCAAGGTTGGGGtCGCGAGTTCAAATCTCGTTTCCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna30 (50803-50729)	Length: 75 bp
Type: Gly	Anticodon: TCC at 34-36 (50770-50768)	Score: 58.63
Seq: GCGAACATCGTATAATGGAtATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCAATTCCCGCTGTTCGCTCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna13 (601123-601049)	Length: 75 bp
Type: His	Anticodon: GTG at 34-36 (601090-601088)	Score: 72.81
Seq: GTGGCTATAGCTCAGTTGGTAGAGTCCTGGATTGTGATTCCAGTTGtCATGGGTTCAAGTCCCATTAGCCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<...

chr.trna2 (268543-268617)	Length: 75 bp
Type: Ile	Anticodon: GAT at 36-38 (268578-268580)	Score: 78.69
Seq: AGGCTTGTAGCTCAGCTtGGTcAGAGCGCACCCCTGATAAGGGTGAGGtCGGTGGTTCAATTCCACTCAGGCCTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna22 (401226-401141)	Length: 86 bp
Type: Leu	Anticodon: GAG at 35-37 (401192-401190)	Score: 46.55
Seq: GCCGAGGTGGTGAAACTGGTaAACACGCTATCTTGAGGGGGTAGTTCCTATTTTTAGGTATGCGGGTTCAAATCCCGTCCTCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna24 (358247-358164)	Length: 84 bp
Type: Leu	Anticodon: TAA at 35-37 (358213-358211)	Score: 72.78
Seq: GCCCGGATGGTGAAATCGGTaAACACAAGGGATTTAAAATCCCTCGGCCTTATGGCTtTGCGGGTTCAAGTCCCGCTCCGGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna20 (429287-429200)	Length: 88 bp
Type: Leu	Anticodon: TAG at 35-37 (429253-429251)	Score: 76.04
Seq: GCGGAAGTGGCGAAATTGGTaAACGCACCAGATTTAGGTTCTGGCGTCATTATTGGCTtTGCGAGTTCGAATCTCGCCTTCCGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna27 (73277-73205)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (73244-73242)	Score: 90.12
Seq: GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGtCGCAGGTTCAAATCCTGCACGACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna9 (566714-566789)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (566747-566749)	Score: 81.12
Seq: GGCCTCTTAGCTCAGTGGTaAGAGCAGGCGACTCATAATCGCTTGGtCGCTGGTTCAAATCCAGCAGGGGCCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna19 (429398-429325)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (429364-429362)	Score: 81.61
Seq: GGCTACGTAGCTCAGTTGGTtAGAGCACAGCACTCATAACGCTGAGGtCACAGGTTCAATTCCTGTCGTAGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna18 (476139-476063)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (476105-476103)	Score: 90.02
Seq: CGCGGGGTGGAGCAGTTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTCGGTTCAAATCCGACCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna32 (19595-19523)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (19562-19560)	Score: 79.58
Seq: GCCTGAATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCGGTGGTTCGATTCCGCCTTCAGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna14 (601013-600940)	Length: 74 bp
Type: Pro	Anticodon: TGG at 35-37 (600979-600977)	Score: 84.21
Seq: CGGCGAGTAGCGCAGTTtGGTAGCGCAACTGGTTTGGGACCAGTAGGtCAGAGGTTCAAATCCTCTCTCGCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna23 (358349-358279)	Length: 71 bp
Type: Cys	Anticodon: GCA at 33-35 (358317-358315)	Score: 34.63
Seq: GGCGCGTTGACAGATTGGTTATGTAGCGGATTGCAAATCCGCCTAGCCCGGTTCAATTCCGGGATGCGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chr.trna6 (423943-424031)	Length: 89 bp
Type: Ser	Anticodon: GCT at 35-37 (423977-423979)	Score: 61.43
Seq: GGTGAGATGGCCGAGAGGCtgAAGGCACTCCCCTGCTAAGGGAGTATGTAAAATAAATTGCATCGAGGGTTCGAATCCCTCTCTCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna8 (542496-542585)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (542530-542532)	Score: 60.81
Seq: GGTGAGATGTCCGAGAGGAttAAGGAGCACGCCTGGAAAGCGTGTATACGATTTTAaAACGTATCAAGGGTTCGAATCCCTTTCTCACCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>.>.....<.<<<<<.>>>>>.......<<<<<<<<<<<<.

chr.trna5 (358559-358643)	Length: 85 bp
Type: Ser	Anticodon: TGA at 35-37 (358593-358595)	Score: 69.63
Seq: GGAGGAATGGCTGAGTGGTttAAAGCAGCGGTCTTGAAAACCGCCGATGAGAAATCATCCGAGAGTTCGAATCCCTCTTCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>.>.......<.<<<<<<<<<<.

chr.trna31 (50716-50643)	Length: 74 bp
Type: Thr	Anticodon: GGT at 35-37 (50682-50680)	Score: 71.10
Seq: GCTGATATAGCTCAGTTtGGTAGAGCACACCCTCGGTAAGGGTGAGGtTCCCAGTTCAAACCTGGGTATCAGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna28 (51021-50949)	Length: 73 bp
Type: Thr	Anticodon: TGT at 34-36 (50988-50986)	Score: 81.52
Seq: GCCGGCTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGtCACCAGTTCGATTCCGGTAGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.

chr.trna11 (609376-609304)	Length: 73 bp
Type: Trp	Anticodon: CCA at 34-36 (609343-609341)	Score: 74.46
Seq: AGGGATGTAGCTCAATTGGTAGAGTATCGGTCTCCAAAACCGAATGtTGGGGGTTCAATTCCCTCCATCCCTG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chr.trna29 (50923-50842)	Length: 82 bp
Type: Tyr	Anticodon: GTA at 35-37 (50889-50887)	Score: 62.20
Seq: GGTGGGATTCCCGAGTGGCtaAAGGGAGCAGACTGTAAATCTGCCGTCAAAGACTtCGAAGGTTCGAATCCTTCTCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<.

chr.trna25 (116766-116690)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (116732-116730)	Score: 59.50
Seq: ATGTCCGTAACTCAGTCaGGTAGAGTGCCATCATGACATGATGGAAGtCAGTGGTTCAATTCCACTCGGACATACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (73360-73288)	Length: 73 bp
Type: Val	Anticodon: TAC at 34-36 (73327-73325)	Score: 80.51
Seq: GGGTGATTAGCTCAATTGGTAGAGCATCTCCTTTACACGGAGAAGGtCGGCGGTTCGAGACCGTCATCACCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.