tRNAscan-SE Analysis of the Buchnera aphidicola Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	1	74987	75059	Ala	GGC	0	0	75.38	53.46	21.92	Both

chr	3	268665	268737	Ala	TGC	0	0	80.49	59.86	20.63	Both

chr	7	424056	424129	Arg	ACG	0	0	76.86	58.34	18.52	Both

chr	12	601237	601164	Arg	CCG	0	0	77.45	53.39	24.06	Both

chr	17	504207	504134	Arg	TCT	0	0	83.87	59.29	24.58	Both

chr	15	566520	566448	Asn	GTT	0	0	78.76	55.48	23.28	Both

chr	4	270888	270961	Asp	GTC	0	0	77.80	62.31	15.49	Both

chr	21	429151	429081	Gln	TTG	0	0	68.71	35.96	32.75	Both

chr	16	511260	511188	Glu	TTC	0	0	51.59	22.10	29.49	Both

chr	10	584164	584236	Gly	GCC	0	0	81.31	57.30	24.01	Both

chr	30	50803	50729	Gly	TCC	0	0	58.63	26.95	31.68	Eufind

chr	13	601123	601049	His	GTG	0	0	72.81	49.47	23.34	Both

chr	2	268543	268617	Ile	GAT	0	0	78.69	54.97	23.72	Both

chr	22	401226	401141	Leu	GAG	0	0	46.55	20.90	25.65	Both

chr	24	358247	358164	Leu	TAA	0	0	72.78	38.24	34.54	Both

chr	20	429287	429200	Leu	TAG	0	0	76.04	50.66	25.38	Both

chr	27	73277	73205	Lys	TTT	0	0	90.12	68.88	21.24	Both

chr	9	566714	566789	Met	CAT	0	0	81.12	58.82	22.30	Both
chr	19	429398	429325	Met	CAT	0	0	81.61	63.04	18.57	Both
chr	18	476139	476063	Met	CAT	0	0	90.02	62.45	27.57	Both

chr	32	19595	19523	Phe	GAA	0	0	79.58	57.12	22.46	Both

chr	14	601013	600940	Pro	TGG	0	0	84.21	59.17	25.04	Both

chr	23	358349	358279	Pseudo	GCA	0	0	34.63	6.34	28.29	Both

chr	6	423943	424031	Ser	GCT	0	0	61.43	28.29	33.14	Both

chr	8	542496	542585	Ser	GGA	0	0	60.81	23.59	37.22	Both

chr	5	358559	358643	Ser	TGA	0	0	69.63	38.84	30.79	Both

chr	31	50716	50643	Thr	GGT	0	0	71.10	40.06	31.04	Both

chr	28	51021	50949	Thr	TGT	0	0	81.52	64.32	17.20	Both

chr	11	609376	609304	Trp	CCA	0	0	74.46	52.13	22.33	Both

chr	29	50923	50842	Tyr	GTA	0	0	62.20	33.91	28.29	Both

chr	25	116766	116690	Val	GAC	0	0	59.50	20.15	39.35	Both

chr	26	73360	73288	Val	TAC	0	0	80.51	58.01	22.50	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.