tRNAscan-SE Analysis of the Buchnera aphidicola Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTTATAGCTCAATTGGTAGAGCGTTTGCATGGCATGCAAAGG...........GtTAGCGGTTCAAATCCGCTTAACTCCA... chr.trna1-AlaGGC Sc: 75.38  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTTATAGCTCAGCTGGGAGAGCGCTTGCTTTGCACGCAAGAG...........GtCAGCGGTTCGATCCCGCTTAACTCCA... chr.trna3-AlaTGC Sc: 80.49  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCATCCGTAGTTCAGTTGGAtAGAGCACTCGGCTACGAACCGAGAG...........GtCGGAGGTTCAAATCCTTCCGGATGCA... chr.trna7-ArgACG Sc: 76.86  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<....
GCGCTTGTAGCTCAGTTGGAtAGAGCGCTACCCTCCGAAGGTAGAG...........GcCTCAGGTTCGAATCCTGTCAAGCGCA... chr.trna12-ArgCCG Sc: 77.45  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCTCTTAGCTCAGATGGAtAGAGCAACGGCCTTCTAAGCCGTAG...........GtCATAGGTTCGAATCCTATAGAGCGCA... chr.trna17-ArgTCT Sc: 83.87  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCGAATCCAGTCAGGGGAG... chr.trna15-AsnGTT Sc: 78.76  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGCGGTAGTTCAGATGGTtAGAATACTGGCCTGTCACGCCGGGG...........GtCGCGGGTTCAAGTCCCGTCCGCACCG... chr.trna4-AspGTC Sc: 77.80  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGCGTTGACAGATTGGTT.ATGTAGCGGATTGCAAATCCGCCT...........AGCCCGGTTCAATTCCGGGATGCGCCT... chr.trna23-CysGCA Sc: 34.63  Pseudo



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
TGGGATATAGCCAAGTGGTA.AGGCACCGGTTTTTGATACCGGC...........AtCCCTGGTTCGAATCCAGG.TATCCCAG... chr.trna21-GlnTTG Sc: 68.71  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGAGGActA.GGACATCGCCCTTTCACGGCGATA...........ACAGGGGTTCAAATCCCCTAGGGGACA... chr.trna16-GluTTC Sc: 51.59  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGT.A.GAGTACAACCTTGCCAAGGTTGGG...........GtCGCGAGTTCAAATCTCGTTTCCCGCT... chr.trna10-GlyGCC Sc: 81.31  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAACATCGTATAAT.GGAtA.TTACCTCAGCCTTCCAAGCTGATG...........A.TGCGGGTTCAATTCCCGCTGTTCGCTCCA chr.trna30-GlyTCC Sc: 58.63  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTATAGCTCAGTTGGTAGAGTCCTGGATTGTGATTCCAGTT...........GtCATGGGTTCAAGTCCCATTAGCCAC.CCA chr.trna13-HisGTG Sc: 72.81  



Ile tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCTTGTAGCTCAGCTtGGTcAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAATTCCACTCAGGCCTA... chr.trna2-IleGAT Sc: 78.69  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>......<<<<....>>>>>.......<<<<<.<<<<<<<....
GCCGAGGTGGTGAAACTGGTaAACACGCTATCTTGAGGGGGTAGT.TCCTATTTT..TAGGTA.TGCGGGTTCAAATCCCGT.CCTCGGTA... chr.trna22-LeuGAG Sc: 46.55  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>........<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGAAGTGGCGAAATTGGTaAACGCACCAGATTTAGGTTCTGGC.GTCA.TTAT...TGGCTtTGCGAGTTCGAATCTCGC.CTTCCGTACCA chr.trna20-LeuTAG Sc: 76.04  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..........<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGATGGTGAAATCGGTaAACACAAGGGATTTAAAATCCCTCGGCC..TTAT....GGCTtTGCGGGTTCAAGTCCCGC.TCCGGGTA... chr.trna24-LeuTAA Sc: 72.78  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCAAATCCTGCACGACCCA... chr.trna27-LysTTT Sc: 90.12  



Met tRNAs


.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTTtGGT.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTCGGTTCAAATCCGACCCCCGCAACCA chr.trna18-MetCAT Sc: 90.02  
>>>>>>>..>>>>...........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTACGTAGCTCAGTT.GGTtA.GAGCACAGCACTCATAACGCTGAG...........GtCACAGGTTCAATTCCTGTCGTAGCTA... chr.trna19-MetCAT Sc: 81.61  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCTCTTAGCTCAGT..GGTaA.GAGCAGGCGACTCATAATCGCTTG...........GtCGCTGGTTCAAATCCAGCAGGGGCCACTA chr.trna9-MetCAT Sc: 81.12  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCTGAATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGT...........GtCGGTGGTTCGATTCCGCCTTCAGGCA... chr.trna32-PheGAA Sc: 79.58  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGAGTAGCGCAGTTtGGTAGCGCAACTGGTTTGGGACCAGTAG...........GtCAGAGGTTCAAATCCTCTCTCGCCGA... chr.trna14-ProTGG Sc: 84.21  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.>.....<.<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGTCCGAGAGGAttA.AGGAGCACGCCTGGAAAGCGTGT.ATACGATTTTAaAACGTAT.CAAGGGTTCGAATCCCTT..TCTCACCG... chr.trna8-SerGGA Sc: 60.81  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...........<<<<..>>>.>.......<.<<<..<<<<<<<....
GGAGGAATGGCTGAGTGGTttA.AAGCAGCGGTCTTGAAAACCGCCGATGA...GAAA....TCATCCGAGAGTTCGAATCCCTC..TTCCTCCA... chr.trna5-SerTGA Sc: 69.63  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGTGAGATGGCCGAGAGGCtgA.AGGCACTCCCCTGCTAAGGGAGT.ATGTAAAATAA.ATTGCAT.CGAGGGTTCGAATCCCTC..TCTCACCA... chr.trna6-SerGCT Sc: 61.43  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGATATAGCTCAGTTtGGTAGAGCACACCCTCGGTAAGGGTGAG...........GtTCCCAGTTCAAACCTGGGTATCAGCA... chr.trna31-ThrGGT Sc: 71.10  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
GCCGGCTTAGCTCAGCA.GGCAGAGCAACTGACTTGTAATCAGTAG...........GtCACCAGTTCGATTCCGGTAGCCGGCA... chr.trna28-ThrTGT Sc: 81.52  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGATGTAGCTCAATTGGTAGAGTATCGGTCTCCAAAACCGAAT...........GtTGGGGGTTCAATTCCCTCCATCCCTG... chr.trna11-TrpCCA Sc: 74.46  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGTGGGATTCCCGAGTGGCtaA.AGGGAGCAGACTGTAAATCTGCCGTCAAA.....GACTtCGAAGGTTCGAATCCTTC.TCCCACCA... chr.trna29-TyrGTA Sc: 62.20  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ATGTCCGTAACTCAGTCaGGTAGAGTGCCATCATGACATGATGGAA...........GtCAGTGGTTCAATTCCACTCGGACATACCA chr.trna25-ValGAC Sc: 59.50  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGATTAGCTCAATT.GGTAGAGCATCTCCTTTACACGGAGAAG...........GtCGGCGGTTCGAGACCGTCATCACCCA... chr.trna26-ValTAC Sc: 80.51

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.