>> tRNAscan-SE >> Lowe Lab
[Home] [Find tRNAs] [BLAST] [Download] [Bug/Request] [FAQ] [Citation] [Legend] [Other Links]

tRNAscan-SE Analysis of Bos taurus (cow) (Baylor release Btau_4.0 Oct 2007)

>> Main Overview >> tRNAs by Isotype >> tRNAs by Locus >> Secondary Structures >> tRNA Alignments >> FASTA Seqs >> Run Options/Stats >> Analysis Notes >> Genome DB >> Genome Seq

tRNAs Sorted by Genome Locus plain text version Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chrX 21 343756 343826 Glu TTC tttggggaat acaagatccc 0 0 34.05 28.95 5.10 Both chrX 103 2371321 2371393 Gly CCC ttgagggact ctagatccta 0 0 41.64 35.41 6.23 Both chrX 238 5903250 5903322 Arg CCG tgaagagact ctagatctca 0 0 49.42 42.08 7.34 Both chrX 259 6336755 6336826 Cys ACA tttgctatct gatctcctgg 0 0 55.86 48.07 7.79 Eufind chrX 270 6487533 6487605 Gly CCC tccagggact ctagatccta 0 0 51.27 38.03 13.24 Both chrX 329 7757885 7757956 Cys GCA tttgggggct aatcccctgg 0 0 55.15 48.50 6.65 Eufind chrX 354 8196163 8196235 Gly CCC tgaggagact ctagatccca 0 0 57.68 42.43 15.25 Eufind chrX 358 8243957 8244029 Gly TCC ttctgggaat tagcttctct 0 0 35.25 27.45 7.80 Both chrX 399 8918370 8918442 Gly CCC ataggggact ctagatccca 0 0 36.85 22.91 13.94 Both chrX 440 9886939 9887011 Gly CCC ctctgggtct ctagacccca 0 0 51.58 37.59 13.99 Both chrX 451 10037030 10037111 Gly TCC tatagggact ctagatccca 0 0 33.06 21.70 11.36 Both chrX 469 10229781 10229853 Gly TCC tttagggact ctaacatccc 0 0 42.50 36.05 6.45 Both chrX 516 10976152 10976224 Gly CCC tctagggatt ctagattcca 0 0 43.71 25.91 17.80 Both chrX 590 12575414 12575486 Glu CTC atgtgggaat ctaaagtctc 0 0 51.64 37.44 14.20 Both chrX 594 12648739 12648811 Trp CCA actcaggact ctagatccca 0 0 37.81 32.20 5.61 Both chrX 644 13826126 13826198 Cys GCA gataggagct gatcccctgg 0 0 57.68 47.03 10.65 Eufind chrX 719 16213473 16213545 Gly GCC gagcttggct actaagatcc 0 0 46.12 36.14 9.98 Both chrX 724 16291148 16291220 Glu TTC ctctcgggat ctaaagatgc 0 0 45.00 32.10 12.90 Both chrX 736 16796876 16796948 Arg TCT acacgggatt ctgagatcct 0 0 40.95 31.42 9.53 Both chrX 790 18701825 18701897 Gly CCC gatgagggtt ctagatccca 0 0 29.11 23.13 5.98 Both chrX 830 19611789 19611861 Gly CCC actagggact ctagttccca 0 0 38.35 24.62 13.73 Both chrX 933 22223589 22223661 Gly CCC aataggggct ctagatccca 0 0 46.76 34.30 12.46 Both chrX 1143 29952604 29952676 Glu TTC gcaggggaat ccaagatccc 0 0 58.72 39.91 18.81 Eufind chrX 1172 30662561 30662633 Arg CCT ttctgggact ctaagatcct 0 0 42.31 30.61 11.70 Both chrX 1315 34451813 34451885 Gly TCC aatagggagt ctaaggtccc 0 0 37.67 29.99 7.68 Both chrX 1341 34808900 34808972 Gly ACC tcaagggatt ctagatccca 0 0 53.22 37.53 15.69 Both chrX 1366 35331654 35331725 Cys GCA cacttatgct gatcccctgg 0 0 56.74 47.30 9.44 Eufind chrX 1434 37048356 37048428 Trp CCA ctttgggact ctagatccca 0 0 58.29 47.70 10.59 Eufind chrX 1445 37155106 37155178 Glu TTC attggagagt ctaagattgt 0 0 47.00 38.65 8.35 Both chrX 1510 39055191 39055262 Gly CCC ccccaagact ctagatccca 0 0 35.95 30.95 5.00 Both chrX 1600 43602633 43602704 Gly CCC aatagggact ctagatctcg 0 0 60.72 47.39 13.33 Both chrX 1652 45858011 45858082 Ala AGC acaaatgaat tctttatgag 0 0 37.04 15.63 21.41 Both chrX 1765 49080543 49080615 Gly CCC cccagggact ctagatccta 0 0 32.53 24.87 7.66 Both chrX 1779 49251376 49251448 Cys ACA atctgagact gatcccctag 0 0 56.81 48.06 8.75 Eufind chrX 1886 54061538 54061610 Gly TCC tagagagaat ctaagaggcc 0 0 55.40 39.89 15.51 Both chrX 2049 57570046 57570118 Trp CCA tattgcaact ctaagatccc 0 0 45.09 38.31 6.78 Both chrX 2108 59367170 59367242 Gly CCC ttaagggact ctagatccca 0 0 47.78 41.49 6.29 Both chrX 2206 61909587 61909657 Glu TTC gagagttagt ggctttgctg 0 0 44.63 31.42 13.21 Both chrX 2211 61993047 61993119 Gly TCC agccagggct ctaagatctg 0 0 45.55 29.74 15.81 Both chrX 2224 62240764 62240835 Cys GCA gatctgggcc atctcctgca 0 0 55.19 43.66 11.53 Eufind chrX 2262 63012476 63012548 Gly CCC ccttggaact ctagatccca 0 0 51.01 36.53 14.48 Both chrX 2408 65773286 65773357 Glu TTC atcttacagt atgagatccc 0 0 47.55 35.62 11.93 Both chrX 2462 67021773 67021845 Glu TTC tataggtaat ctaagatccc 0 0 47.62 34.66 12.96 Both chrX 2556 69534781 69534852 Cys GCA tattagggct gatcccatgg 0 0 38.35 33.34 5.01 Both chrX 2618 71166177 71166249 Gly CCC tgcaggagct ctagatccca 0 0 36.31 23.33 12.98 Both chrX 2652 71714643 71714715 Glu CTC tccagggact ccagatccca 0 0 33.97 27.53 6.44 Both chrX 2683 72278356 72278428 Gly CCC ctttgggact ctagatccca 0 0 38.72 32.93 5.79 Both chrX 2724 73152721 73152793 Gly ACC gagagagact aacggcaaac 0 0 45.65 39.91 5.74 Both chrX 2740 73442161 73442233 Glu TTC acatgggaat ctaagatccc 0 0 55.70 41.01 14.69 Both chrX 2764 74121314 74121386 Gly CCC ctgagggact ctagatccca 0 0 45.58 35.25 10.33 Both chrX 2799 74582178 74582250 Gly TCC gttagtgact ctaagagcca 0 0 46.89 33.88 13.01 Both chrX 2805 74673904 74673976 Gly TCC tggggggact ctaagattcc 0 0 36.90 26.25 10.65 Both chrX 2855 76263339 76263411 Gly CCC ctctgggact ctagatccca 0 0 36.26 25.26 11.00 Both chrX 2877 76861565 76861637 Gly CCC ctctgggact ctagatccca 0 0 36.26 25.26 11.00 Both chrX 2907 77440766 77440838 Val TAC tctgcataga agccgggaag 0 0 81.89 60.56 21.33 Both chrX 2908 77444725 77444797 Phe GAA atcataaaga gattcagtgt 0 0 61.95 52.31 9.64 Both chrX 2911 77446113 77446185 Phe GAA tcaccaggga cccctactgt 0 0 82.68 61.53 21.15 Both chrX 2912 77447356 77447428 Phe GAA tcatcaggga cccctattgt 0 0 82.68 61.53 21.15 Both chrX 2913 77447835 77447907 Phe GAA ccaccaggcg aagccgctgt 0 0 62.94 45.08 17.86 Both chrX 2914 77452896 77452967 Phe GAA tcactggaga gccctattgt 0 0 55.69 40.39 15.30 Eufind chrX 2915 77454098 77454170 Phe GAA tcatcaggga cccctattgt 0 0 82.68 61.53 21.15 Both chrX 2917 77455069 77455143 Phe GAA ttactagggt cccctgttgt 0 0 58.36 46.66 11.70 Eufind chrX 2976 78519971 78520042 Trp CCA cttagggact ctagatccca 0 0 56.69 43.89 12.80 Eufind chrX 3066 80643619 80643690 Ser GGA tgaagaccat gatcccctgg 0 0 55.18 47.39 7.79 Eufind chrX 3155 82627279 82627350 Asp GTC gatagggaat ctaagatcct 0 0 57.78 41.92 15.86 Eufind chrX 3221 83982906 83982977 Gly CCC gctacagact ctagatccca 0 0 55.50 42.39 13.11 Both chrX 3265 85160805 85160877 Glu CTC ggtagggact ctagaaccca 0 0 48.47 37.40 11.07 Both chrX 3364 86584453 86584533 Gly CCC ggcagggact ctcagatccc 0 0 48.57 34.68 13.89 Both chrX 3458 87708329 87708401 Gly CCC tgttagggac ctagatccca 0 0 41.02 31.84 9.18 Both chrX 3504 88296773 88296844 Trp CCA tccaaggttt gatccactgg 0 0 55.58 46.38 9.20 Eufind chrX 3653 86908558 86908486 Gly CCC tcaagggtct ctaagatccc 0 0 42.95 30.12 12.83 Both chrX 3697 86545686 86545615 Gly CCC tcaagggact ctacatccca 0 0 56.67 39.03 17.64 Both chrX 3714 86372220 86372147 Thr AGT ttacatagcc ggggtagttg 0 0 60.32 54.32 6.00 Eufind chrX 3810 84362731 84362660 Gly CCC tgcagagact ctagattcca 0 0 45.12 35.65 9.47 Both chrX 3861 82944955 82944883 Gly TCC ttggggaaca ctaaattcct 0 0 37.86 27.63 10.23 Both chrX 3954 80509444 80509372 Gly CCC cctcaggact ctagatccca 0 0 60.21 41.44 18.77 Eufind chrX 3988 79931327 79931255 Gly CCC tatagggact ctagatccca 0 0 41.98 29.19 12.79 Both chrX 4062 78221208 78221136 Gly CCC tctggggact ctagatccca 0 0 45.17 35.17 10.00 Both chrX 4077 77839964 77839893 Tyr GTA atgcctggct ggtcccctgg 0 0 59.46 51.67 7.79 Eufind chrX 4174 75423908 75423836 Gly CCC cccagggact ctagatccca 0 0 61.43 42.88 18.55 Both chrX 4180 75036664 75036592 Gly CCC atcagggact ttagattcta 0 0 45.77 33.52 12.25 Both chrX 4182 75016030 75015959 Gly CCC gtcagggact ctcgatccca 0 0 44.88 39.87 5.01 Both chrX 4189 74915117 74915045 Cys GCA tttcttggct gtcccctgga 0 0 56.80 45.96 10.84 Eufind chrX 4207 74360420 74360348 Arg TCT ttggtaaact ctaagatccc 0 0 51.02 42.63 8.39 Both chrX 4253 73179421 73179349 Lys TTT cttacggaac ctaagatccc 0 0 39.16 24.96 14.20 Both chrX 4259 72988999 72988928 Gly CCC aacagggact ctagatccca 0 0 27.16 19.94 7.22 Both chrX 4323 71659038 71658966 Gly CCC gatttgaact ctagatccca 0 0 53.95 35.24 18.71 Both chrX 4333 71335876 71335804 Gly CCC tgggggaatt ctaggtctca 0 0 44.82 37.41 7.41 Both chrX 4388 69674050 69673980 Gly TCC gttagggact ctaagatccc 0 0 41.14 30.23 10.91 Both chrX 4500 66217655 66217584 His ATG atgaatgact catcccctga 0 0 61.30 50.73 10.57 Both chrX 4536 65535252 65535181 Glu TTC actagggaat ctaagatctt 0 0 38.22 32.15 6.07 Both chrX 4586 64739035 64738963 Lys TTT gtagctaaaa gcaaaaagta 0 0 75.98 57.00 18.98 Both chrX 4623 64308305 64308233 Gly CCC ttctgggact ttaaatatcc 0 0 34.45 21.89 12.56 Both chrX 4679 63234096 63234024 Gly CCC tgtggggact ctaagatccc 0 0 34.20 27.98 6.22 Both chrX 4712 62810370 62810298 Gly CCC tcccaggact ctagatccca 0 0 49.95 36.97 12.98 Both chrX 4723 62504905 62504834 Glu TTC ccttgggact ttaagatcct 0 0 38.39 31.59 6.80 Both chrX 4724 62495601 62495529 Gly CCC aggtggagtt ccgcatctca 0 0 54.87 35.88 18.99 Both chrX 4739 62258905 62258833 Gly CCC tctaaaggct caaggtgccg 0 0 57.18 46.85 10.33 Both chrX 4744 62161685 62161613 Sup TTA gcctaagcat ctaaggtccc 0 0 45.65 39.30 6.35 Both chrX 4777 61452620 61452548 Gly CCC tggtgggact ctggctccca 0 0 46.86 33.81 13.05 Both chrX 4835 59392720 59392648 Gly CCC tcctgggact ctaacatctt 0 0 36.85 31.20 5.65 Both chrX 4908 56430125 56430053 Gly CCC gagagggact ctagatccca 0 0 47.95 39.12 8.83 Both chrX 5017 53299159 53299088 Ser GGA attcagggct gatcccctgg 0 0 65.28 54.71 10.57 Both chrX 5070 50625014 50624943 Cys GCA aggtaaggca gatcccctgg 0 0 55.35 44.94 10.41 Eufind chrX 5155 48892168 48892097 Phe GAA aaacaggtct gatcccttgg 0 0 45.24 37.26 7.98 Both chrX 5195 47918836 47918764 Trp CCA cagtgagact taagatccca 0 0 35.56 25.19 10.37 Both chrX 5208 47812560 47812489 Arg CCT cttaagaact ctagactcca 0 0 49.06 35.73 13.33 Both chrX 5742 30498158 30498087 Gly CCC ccaagggact ttagatctca 0 0 64.03 43.72 20.31 Both chrX 6605 5978651 5978579 Glu CTC tagaggaact ctagatccca 0 0 43.27 38.27 5.00 Both chrX 6685 3862467 3862395 Gly TCC cattgggaat ctaagatgct 0 0 45.10 35.37 9.73 Both chrX 6705 3562434 3562362 Glu TTC tacagggact ctaagacacc 0 0 58.55 34.44 24.11 Both chrX 6794 988341 988268 Gly CCC ctaagggact caatcccttc 0 0 40.97 35.60 5.37 Both chrX 6808 721327 721255 Gly CCC cctggggact tagatctcac 0 0 48.11 36.78 11.33 Both chrX 6827 492511 492439 Gly CCC catggggact ctagatccca 0 0 51.52 34.20 17.32 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr1 25 363540 363612 Gly CCC accatgtact ttagatctca 0 0 56.43 48.91 7.52 Both chr1 57 761584 761655 Cys GCA tcttagagct gatcttctgg 0 0 60.17 49.06 11.11 Both chr1 319 5089915 5089987 Gly CCC gtctgggcct ttagatctca 0 0 44.48 33.27 11.21 Both chr1 372 6187072 6187144 Val AAC acttctgtga agtgctacta 0 0 47.34 26.78 20.56 Both chr1 781 19050095 19050167 Gly CCC tttgatgccc ctagatctca 0 0 24.07 15.78 8.29 Both chr1 784 19119028 19119100 Lys TTT agatgggaat ctaagatcct 0 0 50.59 43.74 6.85 Both chr1 797 19291698 19291770 Gly TCC ttctaggact ttaagatctt 0 0 32.38 22.95 9.43 Both chr1 804 19451371 19451443 Ala CGC tcccaggact ctagattcta 0 0 33.89 27.30 6.59 Both chr1 878 21364086 21364158 Gly TCC gccagggact caaagagtcc 0 0 44.97 33.08 11.89 Both chr1 1031 25808955 25809026 Gly TCC tatgaggact ttaatatccc 0 0 56.43 42.31 14.12 Both chr1 1122 28682554 28682625 Asp GTC caatagcacc gttggcaatc 0 0 45.74 23.10 22.64 Both chr1 1163 29920978 29921050 Cys GCA gatatgggct atccactggg 0 0 56.41 38.88 17.53 Eufind chr1 1373 37419820 37419891 SeC TCA tagtaagggt gatctcctga 0 0 50.55 0.00 0.00 Eufind chr1 1707 48771802 48771873 Phe AAA attgcagact gatcccctgc 0 0 58.43 47.26 11.17 Both chr1 1919 54828299 54828370 Cys ACA agaataaact gatcccctgg 0 0 52.51 45.45 7.06 Both chr1 2107 60908536 60908607 Ser GGA tatctaccac gagcccctgg 0 0 56.84 48.09 8.75 Eufind chr1 2186 63315648 63315719 Arg GCG agccagggtt gatcccctgg 0 0 55.32 47.96 7.36 Eufind chr1 2435 71048518 71048590 Gly CCC gggcaggact ctagattcca 0 0 47.30 32.87 14.43 Both chr1 2474 71923100 71923172 Gly CCC gacagggact cgagatccca 0 0 46.01 40.72 5.29 Both chr1 2539 73794786 73794858 Gly CCC cctggggact tgagatccca 0 0 48.05 42.31 5.74 Both chr1 2592 75383010 75383081 Cys GCA atggagggct gatccccctg 0 0 52.48 45.18 7.30 Both chr1 2602 75569637 75569709 Gly TCC cacagggaat ctaggatccc 0 0 35.83 30.52 5.31 Both chr1 2685 78769882 78769953 Cys GCA gccagtggct gatcccctgg 0 0 59.15 50.04 9.11 Eufind chr1 2687 78850692 78850763 Cys GCA gccagtggct gatcccctgg 0 0 59.15 50.04 9.11 Eufind chr1 2695 79185717 79185790 Gly CCC tttggaattt ctagatccca 0 0 24.18 19.12 5.06 Both chr1 2803 82211317 82211389 Lys TTT taccatacct ccaaaaataa 0 0 48.37 38.35 10.02 Both chr1 2838 82934266 82934338 Gly TCC catggggact ctaagatcac 0 0 45.81 35.97 9.84 Both chr1 2849 83104005 83104076 Gly TCC ttaagggact ctaagatccc 0 0 33.61 23.39 10.22 Both chr1 2854 83220962 83221034 Glu TTC aacagggaac ctaagatctc 0 0 55.82 44.93 10.89 Both chr1 2929 85209613 85209685 Gly CCC tccagggact ctaaatcccc 0 0 44.20 34.27 9.93 Both chr1 2967 86301877 86301948 Ser GGA catatgggct gatcccttgg 0 0 59.56 51.77 7.79 Eufind chr1 2984 87187848 87187920 Arg TCT aagggggact cgagattcca 0 0 59.00 38.69 20.31 Both chr1 3063 89404997 89405068 Cys ACA tcccagggct gatcccctgg 0 0 59.88 50.03 9.85 Both chr1 3086 90099810 90099882 Gly CCC ttgggggact gtagatccca 0 0 49.48 36.71 12.77 Both chr1 3103 90425742 90425814 Gly TCC acttcggact caaggatccc 0 0 57.86 37.60 20.26 Both chr1 3297 96876149 96876220 Tyr GTA atagttggct gatcccctgg 0 0 35.24 30.17 5.07 Both chr1 3337 97482414 97482486 Gly CCC ttaggggact ctagatccca 0 0 26.15 17.50 8.65 Both chr1 3409 99411019 99411091 Gly CCC atggaggact ctagatcttg 0 0 43.14 32.18 10.96 Both chr1 3410 99422914 99422986 Gly CCC tagagggact ctagatccca 0 0 49.59 35.19 14.40 Both chr1 3417 99516551 99516623 Lys CTT tgtagggaat ctaaaatccc 0 0 63.72 43.53 20.19 Both chr1 3425 99701480 99701552 Gly CCC ttaagagact ctagatccca 0 0 48.63 40.65 7.98 Both chr1 3547 103886927 103886998 Cys ACA tctgggagct gatcccctgg 0 0 48.40 40.73 7.67 Both chr1 3749 110495878 110495957 Gly CCC cacaaggact ctagatccca 110495915 110495923 54.72 41.15 13.57 Both chr1 3756 110555157 110555228 Gly TCC ttgagggagt ctaagatccc 0 0 41.46 30.47 10.99 Both chr1 3827 112872145 112872217 Trp CCA tatatgggct atcccctgga 0 0 55.18 47.84 7.34 Eufind chr1 3921 115209171 115209243 Lys TTT ataaaataga acaaaaataa 0 0 79.55 60.57 18.98 Both chr1 4042 118355851 118355923 Gly CCC tctagggact ctaagattcc 0 0 50.56 40.67 9.89 Both chr1 4054 118703306 118703378 Gly CCC tgatgagact ctagaacctg 0 0 48.01 35.27 12.74 Both chr1 4067 118948848 118948921 Gly CCC aaaagggact ctagatccca 0 0 50.22 38.73 11.49 Both chr1 4070 119027655 119027727 Arg CCT tcctaagact ctagacccca 0 0 56.51 41.27 15.24 Both chr1 4130 120212104 120212175 Cys ACA ttagaatgct gatcccctga 0 0 55.25 46.06 9.19 Eufind chr1 4134 120394007 120394079 Gly CCC ctaggggact ctagatccaa 0 0 51.67 44.34 7.33 Both chr1 4159 120638404 120638476 Glu CTC tggcaggatt ctagatnnnn 0 0 49.10 38.92 10.18 Both chr1 4396 127960327 127960398 Cys GCA acttagggct gattcccctg 0 0 48.88 39.08 9.80 Both chr1 4398 128038028 128038099 Ser GGA ttaaacggct gatcccctgg 0 0 54.38 47.38 7.00 Both chr1 4410 128219503 128219575 Gly CCC ctttggaact ctaggtccca 0 0 51.42 36.38 15.04 Both chr1 4414 128268445 128268517 Gly CCC ctttggaact ctaggtccca 0 0 51.42 36.38 15.04 Both chr1 4425 128541245 128541317 Gly TCC ctcaaggact ctaagacccc 0 0 56.09 44.75 11.34 Eufind chr1 4428 128565841 128565913 Gly CCC gatagggact ccagatctca 0 0 49.48 38.92 10.56 Both chr1 4485 129819879 129819951 Gly CCC ggaagggcct ctagatccta 0 0 48.31 31.36 16.95 Both chr1 4511 130184259 130184331 Gly CCC cacaggtact ctagatccca 0 0 47.07 39.08 7.99 Both chr1 4518 130381839 130381910 Cys ACA tacaaggact gataccctgg 0 0 43.97 37.69 6.28 Both chr1 4557 131490292 131490364 Gly TCC cactgagtct ctagatccca 0 0 54.87 40.84 14.03 Both chr1 4610 132647916 132647988 Gly CCC tctgggactt ctagatccat 0 0 54.88 41.08 13.80 Both chr1 4648 133262726 133262797 Cys GCA ttcatctgct aatcccctgg 0 0 56.43 34.97 21.46 Eufind chr1 4657 133635008 133635080 Gly CCC cgctgggact ctagatccca 0 0 45.88 34.47 11.41 Both chr1 4687 134360457 134360529 Trp CCA ccaagggact ctagatccca 0 0 51.35 36.75 14.60 Both chr1 4771 137110519 137110590 Gly CCC ttaaaggact ctagatccca 0 0 38.44 28.46 9.98 Both chr1 4786 137513416 137513487 Gly CCC gatggggact ctagatccca 0 0 49.61 34.62 14.99 Both chr1 4809 138264526 138264598 Glu CTC agcagagaat ttaagatcct 0 0 49.00 37.65 11.35 Both chr1 4862 139800422 139800493 Cys ACA cactctggct gatcccctgg 0 0 56.07 48.67 7.40 Eufind chr1 5084 145977558 145977630 Gly TCC tctggggact ctaagacccc 0 0 43.18 34.04 9.14 Both chr1 5091 146233437 146233509 Glu TTC ttctgggact ctaagatcct 0 0 46.87 40.55 6.32 Both chr1 5101 146549642 146549713 Gly TCC cacttggaag ccaagaccct 0 0 44.78 30.81 13.97 Both chr1 5122 147349916 147349987 Arg CCT tcttgggact ctgaatccca 0 0 37.32 28.21 9.11 Both chr1 5173 148999422 148999494 Gly CCC catttaaagt ctgggtccca 0 0 38.87 31.20 7.67 Both chr1 5178 149308922 149308993 Gly CCC cacaaggact ctaagatcct 0 0 44.30 35.24 9.06 Both chr1 5248 151191388 151191459 Gly TCC tctttggaat ctaagattcc 0 0 44.98 39.15 5.83 Both chr1 5274 151622382 151622454 Gly TCC ttatgggact ccaagatcct 0 0 43.86 37.23 6.63 Both chr1 5300 151862853 151862924 Gly CCC aatgaggact ctagatccca 0 0 40.75 27.37 13.38 Both chr1 5309 151926844 151926916 Gly CCC caggaggatt ctagatccta 0 0 43.16 38.15 5.01 Both chr1 5721 160713082 160713153 Glu CTC actcaggagc ctaagatccc 0 0 44.21 37.42 6.79 Both chr1 5793 160117551 160117479 Gly CCC gcccggcact ttattaggtc 0 0 43.52 28.74 14.78 Both chr1 5889 157131210 157131138 Arg TCT aaaagggact ctaagatccc 0 0 47.97 35.98 11.99 Both chr1 6285 149313253 149313181 Arg CCT gtgtggcatt ataaaatcct 0 0 35.57 24.96 10.61 Both chr1 6300 148748076 148748004 Gly CCC tatagggatt ctagatccca 0 0 42.25 31.85 10.40 Both chr1 6306 148352755 148352684 Gly CCC ggaagggact ttagacccca 0 0 45.43 39.64 5.79 Both chr1 6321 147722412 147722340 Glu TTC tgtcgggaat ctgagatccc 0 0 39.87 20.64 19.23 Both chr1 6352 146544438 146544367 Cys GCA ggagttgttt gatcctctgg 0 0 63.07 52.50 10.57 Both chr1 6453 144251698 144251626 Gly TCC atgagggact ctaagatccc 0 0 49.56 41.63 7.93 Both chr1 6589 139886532 139886461 Ser GCT ttccagggct gatcttctgg 0 0 55.24 35.11 20.13 Eufind chr1 6679 137710134 137710063 Gly CCC cgtggggact ctagattcca 0 0 55.55 47.01 8.54 Both chr1 6733 135562688 135562616 Arg CCT ttcagggact ctaggtccca 0 0 44.81 30.87 13.94 Both chr1 6789 133737468 133737396 Gly CCC ccagggactt ttagatccca 0 0 62.28 42.28 20.00 Both chr1 6856 132298853 132298781 Glu CTC atcagggact ctagatccca 0 0 41.72 30.57 11.15 Both chr1 7008 128921300 128921228 Ala CGC ctcaggggca ctagatccca 0 0 40.65 34.11 6.54 Both chr1 7078 127401386 127401314 Lys TTT catcttaata ccaaaaaata 0 0 60.45 46.74 13.71 Eufind chr1 7254 120903350 120903279 Gly CCC tgcagggacc ctagatccca 0 0 57.45 38.16 19.29 Both chr1 7266 120764378 120764306 Gly CCC ttctgggact ctagatccca 0 0 38.36 24.86 13.50 Both chr1 7290 120391192 120391120 Gly CCC ctcagggact ctagacccaa 0 0 56.22 42.67 13.55 Both chr1 7317 119621992 119621920 Glu CTC tttggggact aaagatccca 0 0 45.95 34.17 11.78 Both chr1 7355 118687193 118687121 Gly CCC ctgggggact ctggatctca 0 0 38.90 31.73 7.17 Both chr1 7433 115704330 115704258 Glu TTC tcttggaagt ctaagatctc 0 0 38.24 26.71 11.53 Both chr1 7436 115520253 115520182 Cys GCA aacgattgct gatcccctgg 0 0 58.39 49.63 8.76 Eufind chr1 7467 114410195 114410123 Gly GCC gacgggtttt ctagattctg 0 0 55.34 46.76 8.58 Both chr1 7499 113324631 113324559 Glu TTC tcttgggtat gtaagatccc 0 0 59.42 53.51 5.91 Both chr1 7504 113224740 113224669 Gln CTG tgatgtgtgc gcctgtgttt 0 0 59.44 38.39 21.05 Both chr1 7719 107636551 107636480 Trp CCA aattttgtgt gatcggtttt 0 0 57.99 39.88 18.11 Both chr1 7897 99989332 99989260 Val AAC tcgcagatag atgttcgtat 0 0 86.79 61.60 25.19 Both chr1 7898 99933323 99933250 Glu CTC atttggggat ctaagatcct 0 0 35.29 21.75 13.54 Both chr1 7902 99901875 99901786 Tyr GTA cagtgcaatt attgacattt 99901838 99901822 77.09 50.69 26.40 Both chr1 7903 99896417 99896346 Glu CTC aattctgact ctagatccca 0 0 47.10 40.96 6.14 Both chr1 7947 98939445 98939372 Gly CCC actggggact ctagatccca 0 0 49.77 36.61 13.16 Both chr1 7968 98463656 98463583 Gly CCC aaaggggact ctagatccca 0 0 47.57 41.91 5.66 Both chr1 8178 91805218 91805147 Tyr GTA tatgagggct gataccctgg 0 0 56.66 47.75 8.91 Eufind chr1 8292 88193512 88193441 Cys ACA cccagggact tatctcctgg 0 0 58.43 49.67 8.76 Eufind chr1 8293 88146020 88145948 Glu TTC aattggtaat ctgagatacc 0 0 41.60 35.91 5.69 Both chr1 8310 87549283 87549213 Gly GCC gtaggtgtaa agagcactgc 0 0 66.42 51.90 14.52 Eufind chr1 8338 86652884 86652813 Glu CTC aagagggact ctagatccca 0 0 46.05 34.90 11.15 Both chr1 8357 86195569 86195498 Glu TTC aaatacttgt ctgagatcct 0 0 57.61 45.43 12.18 Both chr1 8394 85150641 85150569 Gly TCC tggaaggact ctaagattct 0 0 44.52 36.07 8.45 Both chr1 8396 85050924 85050852 Gly CCC agttaggact ctagatccta 0 0 42.43 36.15 6.28 Both chr1 8431 84004369 84004297 Lys TTT tcttttgcct ccaaaattaa 0 0 56.12 50.91 5.21 Eufind chr1 8456 83350963 83350891 Gly GCC aagtgggact ctagatccca 0 0 48.09 41.45 6.64 Both chr1 8475 82793917 82793845 Arg CCG cccagagact ctagatccta 0 0 37.84 31.00 6.84 Both chr1 8602 78595697 78595625 Gly CCC tactagtact ctagattcca 0 0 52.27 33.98 18.29 Both chr1 8836 70538849 70538777 Gly TCC atccaggact ctagatccca 0 0 53.34 45.12 8.22 Both chr1 8921 67707734 67707655 Glu TTC tcaaaggaat ataaagtcct 0 0 38.94 30.70 8.24 Both chr1 8970 66021682 66021610 Gly TCC ctctagaact ctaagatccc 0 0 46.89 36.69 10.20 Both chr1 9088 62355371 62355300 Cys GCA gggttaatat gatcccctgg 0 0 61.84 53.09 8.75 Eufind chr1 9095 62006367 62006295 Lys TTT ggcttaggga acaaggtctc 0 0 59.09 39.71 19.38 Both chr1 9179 59446501 59446429 Gly TCC aatagggact ctggatccca 0 0 38.52 33.52 5.00 Both chr1 9267 57324057 57323986 Cys GCA gttttgggct gatcccctgg 0 0 56.10 46.79 9.31 Eufind chr1 9302 56008587 56008516 Glu TTC tgggaggaat ctaagatcct 0 0 55.66 46.85 8.81 Both chr1 9390 52693061 52692990 Glu TTC acccgcggat ctgagattct 0 0 51.18 41.38 9.80 Both chr1 9540 47599453 47599381 Arg TCT acatgagact ctaaggtccc 0 0 49.65 39.40 10.25 Both chr1 9601 46207653 46207581 Gly CCC atggagggct tctggatccc 0 0 49.90 44.08 5.82 Both chr1 9631 45528076 45528004 Gly CCC gtgagggact ctagatccca 0 0 35.67 28.78 6.89 Both chr1 9685 44168902 44168830 Glu TTC ttagggtaac ctaaaattcc 0 0 49.17 35.79 13.38 Both chr1 10124 27445431 27445360 Cys GCA aattttggct gatcccctgg 0 0 55.00 44.36 10.64 Eufind chr1 10305 21698808 21698737 Glu TTC ttagaggaat ctaagttccc 0 0 44.59 36.99 7.60 Both chr1 10412 19043698 19043627 Asp GTC aagggagccg gcaacacacc 0 0 52.78 41.19 11.59 Both chr1 10479 16510620 16510548 Cys GCA acttagggct gattccctgg 0 0 57.02 45.00 12.02 Eufind chr1 10643 10098320 10098249 Gln TTG aagtgggcgt ctgagatccc 0 0 56.11 49.49 6.62 Both chr1 10927 3605709 3605637 Gly CCC actggagact ctagatccca 0 0 49.81 43.40 6.41 Both chr1 10984 2967084 2967012 Sup CTA ttttgcgact ttagatccca 0 0 43.35 35.88 7.47 Both chr1 11014 2428680 2428610 Glu TTC ttggaggaac ctaagatccc 0 0 29.07 15.59 13.48 Both chr1 11015 2375663 2375591 Gly TCC tattgggact ctagatccca 0 0 50.10 36.25 13.85 Both chr1 11033 2162452 2162381 Glu TTC ttgagggagt ataagatcct 0 0 42.21 35.16 7.05 Both chr1 11058 1985207 1985135 Gly CCC aactcaggat ccagatccca 0 0 52.27 43.47 8.80 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr2 11 859260 859332 Glu CTC tattgggaat ctaaaaaccc 0 0 64.37 45.94 18.43 Both chr2 28 1266509 1266581 Gly CCC tggagagcct cctgatccta 0 0 50.27 37.74 12.53 Both chr2 136 5117585 5117656 Glu TTC aacggggaat ctaggatctc 0 0 58.08 43.79 14.29 Both chr2 181 6289102 6289172 Gly GCC gctcactgat gcttcagtgt 0 0 48.23 40.21 8.02 Both chr2 341 12200671 12200742 Cys GCA tttaagggat atcccacatt 0 0 37.11 29.05 8.06 Both chr2 421 14734046 14734118 Gly CCC tgtagggact ctagatccca 0 0 48.62 37.69 10.93 Both chr2 459 15883013 15883084 Cys GCA aaaagaggct gatcccctgg 0 0 56.38 47.63 8.75 Eufind chr2 469 16284952 16285023 SeC TCA ctactgggct gattcccctg 0 0 56.22 0.00 0.00 Eufind chr2 631 21608425 21608497 Gly TCC cttagggaat ctaagatcca 0 0 42.38 35.06 7.32 Both chr2 712 23710566 23710638 Gly CCC gggagagact ctagatccct 0 0 46.44 41.44 5.00 Both chr2 714 23726946 23727017 Ala TGC cactgggaat ttaagatctc 0 0 57.69 47.10 10.59 Both chr2 738 24144135 24144207 Glu CTC aagaaagccc ctagatccta 0 0 61.01 43.80 17.21 Both chr2 767 24804843 24804913 Gly TCC agttgggatt ctagattcca 0 0 49.40 34.69 14.71 Both chr2 973 30171817 30171888 Gly TCC agaggagact ctaagatccc 0 0 43.47 34.73 8.74 Both chr2 1298 39861470 39861543 Gly CCC atcagggact gtagacccca 0 0 38.81 30.97 7.84 Both chr2 1324 40711640 40711711 Cys ACA ttttgggact gatcctctgg 0 0 58.43 49.67 8.76 Eufind chr2 1341 41255098 41255168 Gly GCC tacaggaaga atgtgatgtt 0 0 81.62 61.57 20.05 Both chr2 1342 41265404 41265476 Gly CCC tatagagact tcccatgtgc 0 0 47.60 33.29 14.31 Both chr2 1450 45556863 45556934 Tyr GTA tcagagggct gatcccctgg 0 0 55.44 47.16 8.28 Eufind chr2 1476 46161631 46161703 Glu TTC tacagggaat ctaatcccag 0 0 49.36 36.26 13.10 Both chr2 1500 46712045 46712117 Gly CCC tactgggact ctagatccca 0 0 43.44 32.51 10.93 Both chr2 1506 46902128 46902200 Gly CCC ataggggact ctgtatccta 0 0 45.29 33.05 12.24 Both chr2 1634 50364448 50364520 Gly CCC cttggggact ctagatccca 0 0 45.01 31.86 13.15 Both chr2 1871 60178997 60179069 Gly CCC cattgggact ctagattctg 0 0 31.96 26.96 5.00 Both chr2 1938 62247754 62247826 Glu TTC agtcacaaat ctaagatctg 0 0 40.93 33.20 7.73 Both chr2 1974 63647629 63647700 Cys GCA tgtagcagct gatcccctgg 0 0 58.20 47.74 10.46 Eufind chr2 2108 67270832 67270903 Gly TCC aacagggact ctaagatctc 0 0 52.14 41.05 11.09 Both chr2 2148 68533876 68533947 Gly TCC tccctggtgg ttgataccac 0 0 36.74 26.94 9.80 Both chr2 2159 68692755 68692826 Cys GCA atcacaagct gatccctgga 0 0 46.73 41.17 5.56 Both chr2 2414 76437628 76437700 Gly CCC tggcaggact ctagacccta 0 0 43.51 34.44 9.07 Both chr2 2416 76456315 76456387 Leu CAA ggacacgtct gtttgtttgg 0 0 58.85 47.03 11.82 Eufind chr2 2422 76523780 76523852 Leu CAA ggacacgtct gtttgtttgg 0 0 58.85 47.03 11.82 Eufind chr2 2529 79816937 79817009 Gly CCC aagaggaact gtagatccca 0 0 45.43 35.29 10.14 Both chr2 2642 84066260 84066331 SeC TCA atcagggatt ctagatccca 0 0 51.28 0.00 0.00 Both chr2 2800 89280615 89280687 Arg CCT aaacgggact ctagatccta 0 0 42.39 32.10 10.29 Both chr2 2804 89377631 89377703 Gly TCC tggagggact ttaagatcct 0 0 31.40 22.38 9.02 Both chr2 3012 94967172 94967244 Gly TCC gctggggatt ttagatatca 0 0 47.32 31.81 15.51 Both chr2 3084 97020406 97020480 Ser GCT gtaaggggct ccagatccta 0 0 34.19 28.22 5.97 Both chr2 3175 99498723 99498794 Cys GCA actactttct gatcccctgg 0 0 62.16 52.19 9.97 Eufind chr2 3176 99515947 99516019 Glu CTC acgagggact ctagatccca 0 0 42.38 33.28 9.10 Both chr2 3309 102372877 102372949 Gly CCC ttcagggact ctagatccca 0 0 39.13 29.02 10.11 Both chr2 3439 106055529 106055601 Glu TTC cttcgggaaa accaagaatc 0 0 37.50 32.22 5.28 Both chr2 3537 108668029 108668101 Gly CCC gaaggggact tagatcccac 0 0 36.96 31.82 5.14 Both chr2 3602 110271651 110271722 Cys ACA acaacagact gatctcctgg 0 0 56.96 48.25 8.71 Eufind chr2 3758 115078803 115078875 Gly CCC acttgggact ctagattcca 0 0 40.21 26.06 14.15 Both chr2 4057 121407648 121407720 Gly CCC gatggggact ctatctatat 0 0 45.42 33.85 11.57 Both chr2 4175 123364835 123364906 Glu CTC aagctggaat catcctgtaa 0 0 46.16 38.11 8.05 Both chr2 4176 123377674 123377746 Gly TCC ccctgggacc ctacaatcct 0 0 47.86 35.61 12.25 Both chr2 4186 123428795 123428866 Glu TTC gcagcggaat ctaagagtcc 0 0 47.93 39.87 8.06 Both chr2 4199 123638279 123638351 Lys TTT cacggggagt ctaagatccc 0 0 55.59 47.53 8.06 Eufind chr2 4200 123653497 123653567 Arg CCT tttggggact ctagattcca 0 0 57.48 36.53 20.95 Both chr2 4210 123818784 123818856 Glu TTC ttgagagagt ctaagataag 0 0 30.56 15.58 14.98 Both chr2 4263 124867110 124867182 Gly CCC tcgagggatt ctagatccca 0 0 52.05 33.75 18.30 Both chr2 4264 124878460 124878532 Gly CCC gtctgggacc ctagatccca 0 0 40.10 32.34 7.76 Both chr2 4315 125661715 125661787 Gly CCC acttgggacg ctagatcttg 0 0 25.46 17.82 7.64 Both chr2 4336 125857475 125857547 Gly CCC tgcagggact ctagatccca 0 0 51.23 43.49 7.74 Both chr2 4346 126148037 126148109 Arg CCG agcagagact ctagatcccc 0 0 39.76 33.78 5.98 Both chr2 4353 126204331 126204403 Gly CCC accaggaact ctagatccca 0 0 44.79 36.82 7.97 Both chr2 4470 128657827 128657898 Glu TTC gcttgggaac cttagatcct 0 0 44.54 37.83 6.71 Both chr2 4536 129776591 129776662 Cys ACA ttttgagact gatcctctga 0 0 54.72 44.51 10.21 Both chr2 4544 129874700 129874772 Gly CCC agtggggaac ctagatccca 0 0 45.15 34.66 10.49 Both chr2 4559 130223108 130223180 Gly TCC aagaaaaact ctaagaatct 0 0 30.08 21.42 8.66 Both chr2 4572 130316274 130316345 Glu TTC aactgggagc ctgagatcct 0 0 64.31 43.02 21.29 Both chr2 4629 130989954 130990026 Gly CCC tagagggact ctaagatccc 0 0 54.93 42.33 12.60 Both chr2 4674 131748691 131748763 Gly CCC attagggact ctagatccca 0 0 56.77 41.80 14.97 Both chr2 4688 132056903 132056974 Gly TCC ggacaggatt ctaagatcct 0 0 55.71 47.20 8.51 Eufind chr2 4721 132581200 132581272 Gly CCC gccagggact ccagatccca 0 0 44.62 37.35 7.27 Both chr2 4722 132583219 132583299 Ala TGC cctaggaaat ctaagatccc 0 0 34.76 24.61 10.15 Both chr2 4749 133077987 133078059 Gly CCC tttggggact ctagattcca 0 0 27.33 22.33 5.00 Both chr2 4795 133684976 133685048 Gly CCC tctggggact ctagatcttg 0 0 57.41 45.73 11.68 Both chr2 4833 134095774 134095846 Gly CCC cttggggact ccagatccca 0 0 43.98 29.55 14.43 Both chr2 4952 135931794 135931866 Gly CCC tatcgggaat ctagatccca 0 0 41.79 33.76 8.03 Both chr2 5011 137566812 137566883 Gly CCC tgctgggact ctagatccca 0 0 45.06 30.81 14.25 Both chr2 5017 137652705 137652777 Val CAC tcaacggagt ctgtatccca 0 0 30.53 21.41 9.12 Both chr2 5126 139789553 139789624 Gly CCC aaccaggact ctatgaatga 0 0 48.68 38.34 10.34 Both chr2 5142 140109040 140109112 SeC TCA aagagggaat atgaggtcct 0 0 51.39 0.00 0.00 Eufind chr2 5145 140127916 140127987 Gly CCC cacagggact ctggatccca 0 0 47.84 38.48 9.36 Both chr2 5261 139101590 139101519 Cys ACA ctaaaggact gatcctctgg 0 0 56.85 48.14 8.71 Eufind chr2 5445 135906026 135905955 Gly CCC cccaggggac ctcgatgcca 0 0 44.98 38.33 6.65 Both chr2 5455 135784407 135784335 Gly CCC tcttgggact ctagatccca 0 0 44.73 31.23 13.50 Both chr2 5577 134053534 134053462 Val CAC ccctaggact caacatccca 0 0 62.16 44.16 18.00 Both chr2 5690 132707894 132707823 Glu TTC ccttgtcttc gaaggaaact 0 0 77.71 55.17 22.54 Both chr2 5751 131373168 131373097 Glu TTC tctcaggaat ctaagatctt 0 0 59.55 38.11 21.44 Both chr2 5775 131049705 131049633 Gly CCC aacagggact ctagacccca 0 0 40.02 19.02 21.00 Both chr2 5779 131014205 131014133 Gly CCC ggccaggact ctaagtaggt 0 0 41.01 33.75 7.26 Both chr2 5837 130027392 130027322 Gly CCC acataggact ctggatccca 0 0 42.23 30.28 11.95 Both chr2 5878 129193792 129193721 Glu TTC ctatgggact ctaagatcct 0 0 46.28 40.30 5.98 Both chr2 5905 128860030 128859958 Glu TTC cctgaggact gaagatccca 0 0 47.20 41.75 5.45 Both chr2 6012 126630426 126630355 Cys ACA ttgcctgact gatctggaga 0 0 57.22 49.80 7.42 Eufind chr2 6056 126104170 126104098 Glu TTC cgtagggaat ctaagatcct 0 0 40.71 33.66 7.05 Both chr2 6073 125815389 125815317 Gly TCC cggtgggaag ctaagatctt 0 0 41.99 32.99 9.00 Both chr2 6083 125717208 125717136 Gly CCC acaagggact ctagatccca 0 0 34.13 17.89 16.24 Both chr2 6098 125499575 125499503 Gly CCC agtagggact ctagatccca 0 0 53.15 40.48 12.67 Both chr2 6174 124155645 124155574 Glu TTC agtgaggaat caaagatccc 0 0 54.14 42.83 11.31 Both chr2 6187 123909512 123909441 Gly CCC ggaagggact ctagagccca 0 0 48.38 43.04 5.34 Both chr2 6218 123478639 123478567 Gly CCC ttgagggact ttagatcgca 0 0 46.15 34.76 11.39 Both chr2 6227 123377315 123377243 Arg TCT aagagggaat ctatcctaca 0 0 43.29 36.76 6.53 Both chr2 6237 123294986 123294914 Gly CCC cagaaggatt ctagacccta 0 0 55.91 40.88 15.03 Both chr2 6562 116619052 116618982 Cys GCA gtaccggctt atcccgaaga 0 0 32.23 21.10 11.13 Both chr2 6766 111544919 111544847 Gly CCC ttccaggact ctagatccca 0 0 50.21 36.29 13.92 Both chr2 6772 111485413 111485341 Gly CCC tgctgctgct ctagatccca 0 0 39.09 30.87 8.22 Both chr2 6794 110939166 110939094 Gly CCC tgatgggact ctagatccca 0 0 50.35 39.43 10.92 Both chr2 7007 105597284 105597213 Cys GCA ttatagggct gattccctgg 0 0 55.93 46.44 9.49 Eufind chr2 7147 101660663 101660591 Gly CCC aatggggtct ttagattcca 0 0 37.50 30.87 6.63 Both chr2 7421 95391307 95391236 Gly CCC cacagggacc ctgtggatcc 0 0 37.51 28.40 9.11 Both chr2 7448 94793770 94793699 Cys GCA attgagggct gatcccctag 0 0 60.32 47.86 12.46 Eufind chr2 7452 94780341 94780269 Gly CCC tctagggact ctagatcctg 0 0 41.82 34.14 7.68 Both chr2 7463 94454951 94454879 Gly CCC ttttagaact ctagtcctac 0 0 58.01 41.80 16.21 Both chr2 7504 93735226 93735154 Trp CCA ctcagggact ctagatcttg 0 0 48.97 32.92 16.05 Both chr2 7777 84868867 84868795 SeC TCA taatgtgact gatcccctgg 0 0 52.34 0.00 0.00 Eufind chr2 7802 84028390 84028318 Glu TTC aggaattaat ctaagatccc 0 0 56.55 41.13 15.42 Eufind chr2 7812 83634865 83634794 Cys GCA cccaggggct gatcccctgg 0 0 57.75 48.99 8.76 Eufind chr2 7825 82936923 82936852 Cys GCA atatgagact tatcccctgg 0 0 39.50 33.99 5.51 Both chr2 8006 77062399 77062328 Glu TTC tggggggaat ctaaggtcct 0 0 57.16 43.87 13.29 Eufind chr2 8027 76560896 76560824 Gly CCC tctggggact ctagatccca 0 0 46.24 31.73 14.51 Both chr2 8030 76493334 76493262 Gly CCC tctggggact ctagatccca 0 0 46.24 31.73 14.51 Both chr2 8086 75251261 75251189 Gly CCC attcaggact ctagatccca 0 0 55.58 42.50 13.08 Both chr2 8095 75035727 75035655 Glu CTC atgtgggact ctagatccca 0 0 46.76 34.10 12.66 Both chr2 8099 74917431 74917360 Cys GCA atttctcaat gattccctgg 0 0 57.43 44.88 12.55 Both chr2 8101 74890617 74890545 Glu TTC gtagtggaat ataagctctc 0 0 59.05 37.66 21.39 Eufind chr2 8178 72789856 72789776 Trp CCA tagagggact ctagatccca 0 0 38.53 20.99 17.54 Both chr2 8333 67079038 67078964 Gly GCC tcttgggact ccagatccta 0 0 40.37 25.26 15.11 Both chr2 8347 66682307 66682236 Gly CCC tcaggggact ttagatccca 0 0 45.52 32.27 13.25 Both chr2 8397 65582914 65582841 Gln CTG gcctgggact ttgatctcac 0 0 32.87 25.12 7.75 Both chr2 8424 65242795 65242724 Trp CCA ttcagaaact ctaagatccc 0 0 34.60 25.67 8.93 Both chr2 8497 62842538 62842466 Arg CCT gatagggact ctagatccca 0 0 51.56 41.71 9.85 Both chr2 8644 58261454 58261383 Cys GCA cctaggggct gatcccctgg 0 0 59.81 51.05 8.76 Eufind chr2 8973 47020760 47020688 Gly TCC catagggagt ctaagatccc 0 0 50.38 36.36 14.02 Both chr2 9125 41255525 41255454 Ala CGC tcctcggctg accagcccac 0 0 73.12 53.51 19.61 Both chr2 9181 39257970 39257898 Glu TTC agcatgacct gtaagatccc 0 0 46.68 36.46 10.22 Both chr2 9287 36238515 36238434 Leu CAA tggaaataga tttctcagtg 0 0 58.98 38.22 20.76 Eufind chr2 9534 27958808 27958736 Gly CCC ttgagggact ctagatctca 0 0 49.62 44.23 5.39 Both chr2 9558 27575881 27575810 Arg TCT ccaggggagt ctgagaccct 0 0 59.06 40.45 18.61 Eufind chr2 9726 23465275 23465203 Gly CCC gggagagact ctagatccct 0 0 46.44 41.44 5.00 Both chr2 9769 22378832 22378760 Gly TCC gaacaggact gttccaatat 0 0 41.93 36.67 5.26 Both chr2 9903 17664027 17663956 Cys ACA aatgataaat gatcttctgg 0 0 58.45 49.70 8.75 Eufind chr2 9934 16538034 16537963 Arg GCG catctgggct gatcccctgg 0 0 39.43 33.97 5.46 Both chr2 9975 15524819 15524748 Glu TTC tcaaagcagg atcactgggc 0 0 44.26 34.73 9.53 Both chr2 10042 13727780 13727709 Cys GCA ctatgaatct gatcccctgg 0 0 57.22 48.46 8.76 Eufind chr2 10046 13545826 13545754 Gly TCC tctagaggat ctaagatctg 0 0 39.55 33.06 6.49 Both chr2 10132 10394475 10394403 Gly TCC gttagggatt ctaagatccc 0 0 62.52 52.24 10.28 Both chr2 10232 7201058 7200986 Gly CCC cagagggact ctagatccca 0 0 50.73 34.57 16.16 Both chr2 10385 3740779 3740707 Gly CCC aatagggact ctagatccca 0 0 52.09 38.49 13.60 Both chr2 10414 2228739 2228669 Glu TTC atgggagaat ctaagatcct 0 0 32.43 22.66 9.77 Both chr2 10428 1742656 1742586 Undet ??? attagggaat ctaaaatccc 0 0 32.21 26.24 5.97 Both chr2 10440 1279366 1279295 Glu TTC tttcagtggt ctaagaatat 0 0 75.00 51.69 23.31 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr3 113 3708531 3708602 Cys GCA ccagtgggct gatcccctgg 0 0 56.11 47.40 8.71 Eufind chr3 201 7036542 7036613 Cys ACA cctctagact gatcccctgg 0 0 38.57 33.47 5.10 Both chr3 271 8630409 8630491 Leu CAG caggcccgcc agccagcctt 0 0 63.92 39.67 24.25 Both chr3 272 8631775 8631845 Gly GCC ggccatcggt gccgcagcgt 0 0 82.15 62.58 19.57 Both chr3 273 8742588 8742670 Leu CAG gtctgcgtgt acctcccgtt 0 0 75.90 46.89 29.01 Both chr3 274 8751409 8751479 Gly GCC cacggaagta tcctgctctt 0 0 81.62 61.57 20.05 Both chr3 275 8816549 8816631 Leu CAG caggcccgcc agccagcctt 0 0 77.22 46.89 30.33 Both chr3 276 8817913 8817983 Gly GCC ggccatcggt gccgcagcgt 0 0 82.15 62.58 19.57 Both chr3 277 8939849 8939931 Leu CAG caggcccgcc agccagcctt 0 0 77.22 46.89 30.33 Both chr3 278 8941221 8941291 Gly GCC ggccatcggt gccgcagcgt 0 0 82.15 62.58 19.57 Both chr3 279 8949436 8949518 Leu CAG caggcccgcc agccagcctt 0 0 77.22 46.89 30.33 Both chr3 280 8950824 8950895 Undet ??? ggccatcggt gccgcagcgt 0 0 73.13 53.56 19.57 Eufind chr3 281 8961140 8961211 Asp GTC gttgccggca gcaacacacc 0 0 65.38 40.84 24.54 Both chr3 284 8993689 8993761 Val CAC ctaagacaga gacatgttct 0 0 87.39 62.20 25.19 Both chr3 299 9308409 9308480 Lys TTT acttgggaat ctaagattcc 0 0 51.38 42.72 8.66 Both chr3 378 11504051 11504123 Gly CCC gccagggatt ctagatccta 0 0 36.13 26.16 9.97 Both chr3 381 11562645 11562718 Arg TCT gtgtggtgag gtcacctggc 0 0 76.29 56.97 19.32 Both chr3 426 13579708 13579780 Gly CCC tcacaggact ctagatccca 0 0 63.66 45.21 18.45 Both chr3 427 13587316 13587388 Gly CCC aactggaact ctagatccca 0 0 53.62 38.40 15.22 Both chr3 464 15082363 15082434 Ser GGA acaacgggct gatcccctgg 0 0 57.44 50.02 7.42 Eufind chr3 487 15753082 15753154 Trp CCA agcagggact ttagatcctg 0 0 37.38 31.54 5.84 Both chr3 514 16279313 16279385 Lys CTT aggggggact ctaggtccca 0 0 40.70 30.25 10.45 Both chr3 569 17429790 17429862 Glu TTC actcaggaat ctaagatccc 0 0 45.31 29.87 15.44 Both chr3 603 18039319 18039390 Lys TTT ttaagtgaat ctaagatccc 0 0 35.00 28.48 6.52 Both chr3 628 18682362 18682432 Undet ??? gttttcttca gcaggccaac 0 0 57.11 32.85 24.26 Eufind chr3 676 20216530 20216602 Gly CCC agctgagact ctagatcaca 0 0 49.10 44.06 5.04 Both chr3 710 20722548 20722619 Gly CCC atgagtgact ctagatctca 0 0 54.83 39.86 14.97 Both chr3 727 20968220 20968293 Gly CCC ttgcagggac tagatcccat 0 0 29.76 17.36 12.40 Both chr3 737 21106015 21106087 Gly CCC aatagtgact ctaaatccca 0 0 35.79 30.30 5.49 Both chr3 746 21243831 21243903 Gln TTG accgaggact ctaagatccc 0 0 39.71 33.82 5.89 Both chr3 790 21949487 21949559 Gly CCC tagtgggaca ctagatacca 0 0 48.25 36.54 11.71 Both chr3 811 22472769 22472840 His GTG acagtggcgc gtgtttatct 0 0 64.63 37.18 27.45 Both chr3 812 22477091 22477161 Gly CCC ttgtggcaaa tagtgcccaa 0 0 75.47 55.58 19.89 Both chr3 813 22489650 22489721 Glu TTC agcacgtagt agtgtctctt 0 0 61.92 47.79 14.13 Both chr3 814 22498590 22498661 His GTG acagtggcgc gtgtttcttt 0 0 64.63 37.18 27.45 Both chr3 815 22504764 22504837 Asn GTT tgtccttcga gctgcctcta 0 0 82.24 58.97 23.27 Both chr3 819 22547660 22547732 Val TAC aggtgggccg ggttgccctc 0 0 87.03 61.84 25.19 Both chr3 821 22556580 22556653 Asn GTT ccgtagtgct gtgggggtga 0 0 82.24 58.97 23.27 Both chr3 822 22557256 22557328 Val CAC agtttatcca ggctttctct 0 0 87.16 61.97 25.19 Both chr3 824 22566601 22566674 Asn GTT ccgtagtgct gtgggggtga 0 0 82.24 58.97 23.27 Both chr3 825 22567276 22567348 Val CAC agtttgttcc ggctgcctct 0 0 87.39 62.20 25.19 Both chr3 827 22577619 22577691 Val AAC tggccgtgtg actccacttt 0 0 84.90 61.18 23.72 Both chr3 828 22588570 22588642 Val TAC agggtgtccc ggttgctgtc 0 0 80.49 60.24 20.25 Both chr3 829 22591608 22591681 Asn GTT ccgtagtgct gtgggggtga 0 0 82.24 58.97 23.27 Both chr3 830 22592284 22592356 Val CAC agtttatcca ggctttctct 0 0 87.16 61.97 25.19 Both chr3 832 22602416 22602488 Val AAC tggccgtgtg actccacttt 0 0 84.90 61.18 23.72 Both chr3 833 22616545 22616618 Asn GTT ccgtagtgct gtgggggtga 0 0 82.24 58.97 23.27 Both chr3 834 22617228 22617300 Val CAC agtttatcca ggctttctct 0 0 87.16 61.97 25.19 Both chr3 837 22636210 22636282 Val AAC tgactgtgtg actctgcttt 0 0 71.31 55.66 15.65 Eufind chr3 838 22652251 22652323 Val TAC gagggtgtct ggttgctctc 0 0 67.07 51.12 15.95 Eufind chr3 839 22655088 22655161 Asn GTT ccgtagtgct gtgggggtga 0 0 82.24 58.97 23.27 Both chr3 840 22655765 22655837 Val CAC agtttatccc ggcttttctc 0 0 87.16 61.97 25.19 Both chr3 841 22656357 22656428 Glu TTC ggtctacagc agctttcttt 0 0 72.33 49.66 22.67 Both chr3 842 22665109 22665179 Val AAC tggccgtgtg actccacttt 0 0 61.56 38.10 23.46 Eufind chr3 843 22671993 22672065 Val AAC tagccatgtg gcggcccttc 0 0 86.79 61.60 25.19 Both chr3 844 22687151 22687223 Val AAC agaccgcgtg actgcgcttt 0 0 86.79 61.60 25.19 Both chr3 845 22698109 22698181 Val TAC agggtgtccc ggttgctgtc 0 0 80.49 60.24 20.25 Both chr3 846 22701141 22701214 Asn GTT ccgtagtgct gtgggggtga 0 0 82.24 58.97 23.27 Both chr3 848 22863655 22863725 Gly CCC ctctatagtg ttgttgttgt 0 0 74.10 59.83 14.27 Both chr3 852 22894967 22895039 Val CAC agggtgtcca ggttgctctc 0 0 70.03 52.78 17.25 Both chr3 854 22900179 22900252 Asn GTT ttgtactgtt tgggggtgac 0 0 60.19 52.80 7.39 Both chr3 855 22900856 22900928 Val CAC agtttatccc agtttttctc 0 0 87.39 62.20 25.19 Both chr3 856 22901448 22901519 Glu TTC tgtctacagc agctttcttt 0 0 70.59 47.92 22.67 Both chr3 857 22910491 22910563 Val AAC tggccgtgtg attccacttt 0 0 79.36 57.78 21.58 Both chr3 858 22915543 22915615 Val CAC tagccatgtg acggcacttc 0 0 77.39 55.98 21.41 Both chr3 859 22926610 22926680 Gly CCC ctctatggtg ttgtggttat 0 0 79.31 60.98 18.33 Both chr3 861 22941622 22941695 Asn GTT cttgtctcag cgtttcacgc 0 0 63.85 49.94 13.91 Both chr3 863 22958009 22958082 Asn GTT ttgtgtcatt gcgggttgaa 0 0 73.80 51.70 22.10 Both chr3 864 22958665 22958737 Val CAC cgactgtcgc ggtctctttt 0 0 56.42 43.11 13.31 Eufind chr3 865 22962665 22962736 His GTG gttgtggtgc ttaggttaca 0 0 64.63 37.18 27.45 Both chr3 866 22966480 22966553 Asn GTT cgagtgtcga tgtctctgcc 0 0 74.46 55.83 18.63 Both chr3 868 23012150 23012221 His GTG gccgtggcgc ctctcatccg 0 0 64.63 37.18 27.45 Both chr3 869 23032838 23032910 Val CAC cacagccatc cagttgctgt 0 0 85.40 61.14 24.26 Both chr3 870 23035542 23035614 Val AAC tagccgtgtg accttacttt 0 0 86.79 61.60 25.19 Both chr3 872 23049295 23049367 Lys CTT ttgcactggt acttaagctt 0 0 80.47 57.81 22.66 Both chr3 873 23084477 23084548 Gln CTG ctttcaaagg ttctgtttaa 0 0 69.34 47.76 21.58 Both chr3 911 23953462 23953534 Gly CCC gacagggact ttagattcca 0 0 51.48 42.00 9.48 Both chr3 938 24580280 24580353 Asn GTT gcagcagctg gattggcttg 0 0 75.33 47.65 27.68 Both chr3 940 24595650 24595721 Gln CTG ggccgctggc ttctctttag 0 0 71.08 49.49 21.59 Both chr3 1013 26604798 26604870 Glu TTC tccatggaat ttaagattcc 0 0 38.03 23.68 14.35 Both chr3 1278 33073445 33073517 Gly CCC cttagggact ccagatccca 0 0 42.42 36.66 5.76 Both chr3 1361 35253199 35253271 Gly CCC tacaaggatt cttgattcca 0 0 45.07 28.12 16.95 Both chr3 1368 35349247 35349319 Lys TTT cattgttaga ctaagttctt 0 0 78.43 59.45 18.98 Both chr3 1446 37957277 37957349 Glu TTC ttgaaggact cagattccat 0 0 45.72 39.29 6.43 Both chr3 1510 40070137 40070208 Cys GCA tttttgaact gatctcctgg 0 0 55.54 49.68 5.86 Eufind chr3 1878 51350142 51350214 Gly CCC cacagagact ctagatccca 0 0 41.59 32.68 8.91 Both chr3 1894 51849870 51849942 Gly CCC tctagggact acagatccca 0 0 25.61 14.71 10.90 Both chr3 1965 54265750 54265821 Cys ACA cataaggact gatcctctgg 0 0 59.14 49.98 9.16 Both chr3 2132 59486256 59486327 Asp GTC tgtaaagccg gcaacacacc 0 0 55.16 45.98 9.18 Eufind chr3 2162 60930328 60930399 Cys ACA ttatcacaga atcctctgga 0 0 40.63 31.92 8.71 Both chr3 2227 62707958 62708029 Trp CCA atctaaagct gatcccttgt 0 0 65.82 47.91 17.91 Both chr3 2245 63314789 63314859 Cys ACA gggaaggact atcctctgga 0 0 42.87 33.82 9.05 Both chr3 2268 63863184 63863264 Cys GCA atgtggtggt gatcccctgg 63863221 63863229 31.29 17.50 13.79 Both chr3 2375 67810792 67810863 Cys ACA agactagact gatctcccgg 0 0 55.48 43.70 11.78 Eufind chr3 2384 68084172 68084244 Gly TCC accagggact caaagacccc 0 0 47.75 37.59 10.16 Both chr3 2457 70925298 70925370 Gly CCC cttggggact ttagatcccc 0 0 37.09 29.06 8.03 Both chr3 2479 71271996 71272072 Gly CCC cctcaggact ctagatccca 0 0 30.96 21.90 9.06 Both chr3 2591 74287597 74287669 Gly TCC tgaacggact ctaagatccc 0 0 29.75 24.67 5.08 Both chr3 2897 83551929 83552000 Trp CCA cttttgggct gatcccctgg 0 0 57.45 51.96 5.49 Eufind chr3 2931 84924980 84925051 Cys GCA ctttcaggct gatcccctgg 0 0 58.72 49.96 8.76 Eufind chr3 2971 86184039 86184111 Glu TTC cacagggaat ctaaagtccc 0 0 56.11 48.70 7.41 Eufind chr3 2984 86322865 86322938 Gly GCC tgctgggact ctagatccca 0 0 60.75 43.06 17.69 Both chr3 3138 90278286 90278357 Glu TTC tctagtgaat ctaacatcac 0 0 49.28 31.76 17.52 Both chr3 3277 93533118 93533190 Gly CCC gcctgggact ctagatacca 0 0 59.95 43.80 16.15 Both chr3 3323 94863561 94863632 Trp CCA atgtagggct gatcctccag 0 0 33.13 25.10 8.03 Both chr3 3333 95037866 95037937 Trp CCA atgtagggct gatcctccag 0 0 33.13 25.10 8.03 Both chr3 3377 96177012 96177084 Trp CCA ctggaagact ctgatcctac 0 0 65.70 50.84 14.86 Both chr3 3463 98997525 98997596 Glu TTC tgaagggaaa ctaggatccc 0 0 57.11 39.08 18.03 Both chr3 3591 102097378 102097449 Gly CCC tgtgaggact ctagatccca 0 0 40.70 30.56 10.14 Both chr3 3738 106057206 106057278 Glu CTC ctttgggact ctagatccca 0 0 45.53 34.20 11.33 Both chr3 3744 106362530 106362603 Gly CCC atgatggact ctagatacca 0 0 46.86 41.86 5.00 Both chr3 3750 106523838 106523909 Tyr GTA ctcctgctct gatcccctgg 0 0 56.29 48.12 8.17 Both chr3 3772 106880769 106880841 Glu CTC gctcagaaat caaaatccca 0 0 39.08 30.77 8.31 Both chr3 3995 111878977 111879049 Gly CCC aagaggtact ctagattcca 0 0 49.14 27.83 21.31 Both chr3 4046 112849308 112849380 Gly CCC ttgcaggact ctggattcca 0 0 43.70 37.94 5.76 Both chr3 4085 113503749 113503820 Gly TCC tccagggacg ctaagatttc 0 0 43.94 33.40 10.54 Both chr3 4143 114394378 114394450 Gly CCC tcatgaaact ctagatccca 0 0 56.38 43.31 13.07 Both chr3 4153 114514328 114514400 Gly CCC tgaagggaca cgagatccca 0 0 40.09 25.18 14.91 Both chr3 4258 116897763 116897835 Gly CCC ataagggact ctagatccca 0 0 55.20 42.00 13.20 Both chr3 4266 117067925 117067997 Asp ATC ctcagggtat ctaagatccc 0 0 56.78 45.36 11.42 Eufind chr3 4276 117254423 117254495 Glu TTC tcttgggaat ctaagatctc 0 0 46.02 40.27 5.75 Both chr3 4301 117678950 117679022 Gln CTG gggaggggct ttatagattc 0 0 45.64 39.88 5.76 Both chr3 4456 120518070 120518142 Gly CCC ttcagggact ctagattcta 0 0 47.67 32.74 14.93 Both chr3 4481 120967723 120967795 Gly CCC tacagggaat ctagatccca 0 0 49.25 42.66 6.59 Both chr3 4520 121671791 121671863 Undet ??? tgctgagact ctgggtccca 0 0 31.40 26.39 5.01 Both chr3 4556 122411510 122411582 Lys CTT gaagtgactt ctagatccca 0 0 45.35 36.27 9.08 Both chr3 4577 122936112 122936184 Gly CCC gagcaggacc ctagattcca 0 0 45.62 31.78 13.84 Both chr3 4895 123465552 123465480 Gly CCC tcacggcact ctaagatccc 0 0 55.50 42.92 12.58 Both chr3 4898 123297823 123297751 Glu TTC cccacagaat ctaggatctc 0 0 60.51 43.12 17.39 Both chr3 4946 122392949 122392878 Glu TTC ttcaaggagt ctaagattct 0 0 51.45 43.19 8.26 Both chr3 4992 121626580 121626508 Trp CCA tccagggagt ctagatccca 0 0 50.98 41.68 9.30 Both chr3 5128 118637573 118637501 Cys GCA cttggaggct atcccctgga 0 0 55.06 44.22 10.84 Eufind chr3 5156 118057029 118056957 Glu CTC acgagagaat ctaagacccc 0 0 43.67 25.86 17.81 Both chr3 5157 118042668 118042596 Trp CCA ttctgagact ctagatccca 0 0 28.89 22.45 6.44 Both chr3 5161 117921628 117921556 Gly TCC ttttaggact ctaagatccc 0 0 38.74 30.73 8.01 Both chr3 5163 117850461 117850389 Lys TTT tcttggtaat gtaaaatccc 0 0 46.25 36.07 10.18 Both chr3 5210 116826342 116826271 Glu TTC tggggggaat ctaagatctt 0 0 41.37 28.86 12.51 Both chr3 5211 116818022 116817950 Gly CCC ttctgggact ctagatccca 0 0 39.56 31.41 8.15 Both chr3 5215 116694907 116694832 Trp CCA agggggcact ctagatccca 0 0 35.92 28.11 7.81 Both chr3 5316 114331139 114331067 Trp CCA aggagggact ctagattccg 0 0 43.48 36.23 7.25 Both chr3 5327 114092325 114092254 Ala TGC aagtttgtca tattttgggc 0 0 72.71 49.12 23.59 Both chr3 5352 113439378 113439306 Glu TTC gagagggaaa ctaagatccc 0 0 29.66 22.44 7.22 Both chr3 5371 113139451 113139379 Arg CCT taaggggact ctagatccca 0 0 53.25 45.60 7.65 Both chr3 5482 110430876 110430804 Gly CCC ttctgggact ctagatccca 0 0 45.28 30.72 14.56 Both chr3 5495 110227417 110227344 Glu TTC tcaggggagt ctaagattct 0 0 49.55 41.07 8.48 Both chr3 5523 109225919 109225849 Cys ACA tttttagata gatcccctgg 0 0 55.20 44.73 10.47 Eufind chr3 5560 108166378 108166307 Cys ACA gtgttggact gatcctctgg 0 0 58.03 51.67 6.36 Both chr3 5592 107511529 107511457 Gly CCC tatggggact ctagatccca 0 0 45.14 35.66 9.48 Both chr3 5633 106902805 106902724 Glu TTC tggagggaat cttaattcca 106902768 106902759 38.58 26.82 11.76 Both chr3 5643 106777628 106777556 Arg CCT tgtaaggact ctagatccca 0 0 50.24 43.10 7.14 Both chr3 5710 105049413 105049342 Arg ACG tttgtggact gatcctctgg 0 0 57.74 48.99 8.75 Eufind chr3 5718 104873225 104873152 Thr AGT ggctaagaaa gccggtgttc 0 0 76.30 60.08 16.22 Both chr3 5842 100682958 100682886 Gly CCC ctctggggct ctagatccca 0 0 53.87 43.80 10.07 Both chr3 5861 100315597 100315526 Gly CCC tttagggact ctagatccca 0 0 32.88 17.91 14.97 Both chr3 5924 98878858 98878784 Gly CCC atgtgagact ctaaggtcca 0 0 38.74 21.93 16.81 Both chr3 5950 98222467 98222396 Pro AGG atagattagt tactttggac 0 0 56.30 35.55 20.75 Both chr3 5974 97555728 97555656 Val TAC atctgggact ctagatccca 0 0 37.57 28.52 9.05 Both chr3 6121 93693139 93693067 Gly TCC ctgggggaat ttaacatcct 0 0 53.29 39.79 13.50 Both chr3 6204 91486450 91486379 Cys ACA agctgagact gatcccctgg 0 0 44.16 37.72 6.44 Both chr3 6250 90434224 90434152 Gly CCC tgtagggact ctagaaccca 0 0 54.13 42.78 11.35 Both chr3 6284 89509523 89509452 Cys ACA aactgtgact gatcccctgg 0 0 57.22 49.13 8.09 Eufind chr3 6425 85445220 85445149 Glu CTC tagcctctgg ttaagatctc 0 0 47.70 23.95 23.75 Both chr3 6472 83985831 83985759 Gly TCC tttagggaat ctaaaatccc 0 0 39.56 26.23 13.33 Both chr3 6514 82774394 82774323 Asp GTC cccaccacct gcaacatgcc 0 0 62.73 36.83 25.90 Both chr3 6712 76529865 76529794 Cys ACA aattacgact gatccctggg 0 0 51.56 44.29 7.27 Both chr3 6786 73694583 73694512 Cys GCA aaagagggct atccgctgga 0 0 58.18 52.16 6.02 Eufind chr3 6798 73465972 73465900 Gly TCC ttttgagact ctagatcctc 0 0 36.40 29.02 7.38 Both chr3 6836 72350675 72350603 Gly CCC atgcgggact ctagatccca 0 0 41.73 36.24 5.49 Both chr3 6898 71105469 71105397 Gly CCC gcaggggact ctagatcctg 0 0 56.32 36.28 20.04 Both chr3 7098 63675901 63675829 Gly CCC tggagggact ctagatccta 0 0 51.02 38.03 12.99 Both chr3 7141 62381816 62381745 Trp CCA atctaaagct gatcccttgt 0 0 65.82 47.91 17.91 Both chr3 7191 60880132 60880061 Cys GCA aataggggct gatcccctgg 0 0 62.51 51.59 10.92 Eufind chr3 7392 54660634 54660563 Glu TTC ttgggggaat ctaagatccc 0 0 56.95 45.42 11.53 Both chr3 7394 54632342 54632271 Gln CTG ggtcggccat tttcctttgg 0 0 32.11 24.05 8.06 Both chr3 7409 54337557 54337486 Gly CCC tccagggact ctagatccca 0 0 53.44 40.20 13.24 Both chr3 7445 53671954 53671883 Cys GCA tgtttgggct gatcccatgg 0 0 32.68 27.46 5.22 Both chr3 7471 52947209 52947125 Arg TCT tccaacaggt gaggtttttt 52947172 52947161 71.81 53.51 18.30 Both chr3 7519 51687011 51686940 Tyr GTA ttaaagtgct gatcccctgg 0 0 56.51 48.08 8.43 Eufind chr3 7797 42129742 42129670 Glu TTC agatgggaat ataagattcc 0 0 37.37 24.09 13.28 Both chr3 7877 39238088 39238017 Cys ACA accagggact gatctcctgg 0 0 58.16 49.47 8.69 Both chr3 7924 37988773 37988702 Gly CCC tcttgagact ctaaatccca 0 0 45.81 27.13 18.68 Both chr3 7970 36907946 36907874 Ser CGA ttcagggact ctagatccca 0 0 42.28 37.09 5.19 Both chr3 8024 35522698 35522626 Gly CCC aataggaact ctagatccca 0 0 42.91 32.38 10.53 Both chr3 8112 32923193 32923121 Arg CCT ttgggggact ctagatccca 0 0 42.73 24.50 18.23 Both chr3 8169 31598647 31598575 Sup CTA tctggggacc ctagatccca 0 0 49.83 36.52 13.31 Both chr3 8333 28404534 28404463 Cys GCA attctgggct gaacccctgg 0 0 57.00 48.24 8.76 Eufind chr3 8336 28295302 28295230 Glu TTC tactggtatg ctaagatccc 0 0 60.32 46.48 13.84 Both chr3 8446 25584428 25584357 Glu TTC ttcagggaat ctgggatccc 0 0 39.13 31.38 7.75 Both chr3 8451 25514094 25514023 Gly CCC tgtcaggact ctaagatccc 0 0 45.87 35.55 10.32 Both chr3 8481 24597900 24597827 Asn GTT gtagcagttg aactcggctt 0 0 80.50 57.23 23.27 Both chr3 8483 24578471 24578400 Cys GCA tggactgtac ctaaggccta 0 0 69.26 51.34 17.92 Both chr3 8534 23224570 23224499 Glu CTC tctgccatcg atactcgttt 0 0 76.61 53.94 22.67 Both chr3 8535 23222187 23222116 Gly TCC cttcctgtgt gtgcctatct 0 0 73.26 52.83 20.43 Both chr3 8537 23081019 23080946 Asn GTT ctgtagtgct gtggggtgag 0 0 82.24 58.97 23.27 Both chr3 8538 23080314 23080242 Val CAC cggttgtcct gaccgcttat 0 0 87.39 62.20 25.19 Both chr3 8539 23079352 23079281 Glu TTC cctccgcggt agctgttttc 0 0 72.33 49.66 22.67 Both chr3 8540 23078294 23078221 Asn GTT gtgtggtcct ggcggtcgag 0 0 79.17 58.89 20.28 Both chr3 8541 23056985 23056912 Asn GTT aagtcctcgt taccctttta 0 0 82.24 58.97 23.27 Both chr3 8543 23046465 23046394 His GTG agtgtggcgc ttaggttgca 0 0 64.63 37.18 27.45 Both chr3 8544 23042135 23042062 Asn GTT gtcctcttgt cgtgtcactc 0 0 78.67 55.40 23.27 Both chr3 8545 23011460 23011387 Asn GTT tcgttcgtta ccttccgctt 0 0 82.24 58.97 23.27 Both chr3 8548 22986169 22986099 Gly CCC atttataggg tcatggtctt 0 0 47.14 34.76 12.38 Both chr3 8549 22979121 22979049 Val CAC cacggacctc gatttccttc 0 0 56.73 46.31 10.42 Eufind chr3 8550 22975574 22975502 Val AAC tgaccatatg gcttcacttt 0 0 77.59 55.01 22.58 Both chr3 8552 22942420 22942348 Val AAC taaccgcgtg actccacttt 0 0 86.79 61.60 25.19 Both chr3 8553 22931542 22931470 Val TAC agggtgtccc ggttgctctc 0 0 62.31 50.17 12.14 Eufind chr3 8554 22928722 22928649 Asn GTT ccgtagtgct aaggcgtggc 0 0 82.24 58.97 23.27 Both chr3 8555 22928046 22927974 Val CAC agggtgtccc ggattttctc 0 0 80.44 56.22 24.22 Both chr3 8556 22927455 22927384 Glu TTC tgtctacagc agctttcttt 0 0 72.33 49.66 22.67 Both chr3 8557 22919173 22919102 His GTG tatgtggcac tggcctccgt 0 0 64.63 37.18 27.45 Both chr3 8559 22902300 22902230 Gly CCC ctctatagtg ttgttgttgt 0 0 74.10 59.83 14.27 Both chr3 8563 22870988 22870916 Val CAC agggtgtcca ggttgctctc 0 0 70.03 52.78 17.25 Both chr3 8565 22865776 22865703 Asn GTT ttgtactgtt tgggggtgac 0 0 60.19 52.80 7.39 Both chr3 8566 22865099 22865027 Val CAC agtttatccc agtttttctc 0 0 87.39 62.20 25.19 Both chr3 8567 22864507 22864436 Glu TTC tgtctacagc agctttcttt 0 0 70.59 47.92 22.67 Both chr3 8568 22855464 22855392 Val AAC tggccgtgtg attccacttt 0 0 79.36 57.78 21.58 Both chr3 8569 22699955 22699884 Gln CTG ctccggaggg ttctgcctac 0 0 69.34 47.76 21.58 Both chr3 8572 22687949 22687876 Asn GTT cttgtctcag cgtttcacgc 0 0 63.85 49.94 13.91 Both chr3 8573 22678779 22678708 His GTG tatgtggcac tggcctccgt 0 0 64.63 37.18 27.45 Both chr3 8575 22657198 22657128 Gly CCC ctctatagtg ttgttgttgt 0 0 74.10 59.83 14.27 Both chr3 8576 22653901 22653830 Gln CTG ctccggaggg ttctgcctac 0 0 69.34 47.76 21.58 Both chr3 8580 22637176 22637103 Asn GTT cttgtctcag cgtttcacgc 0 0 63.85 49.94 13.91 Both chr3 8582 22627598 22627527 His GTG tatgtggcac tggcctccgt 0 0 64.63 37.18 27.45 Both chr3 8583 22618697 22618627 Gly CCC ctctatagtg ttgtggttat 0 0 65.48 53.64 11.84 Both chr3 8584 22615359 22615288 Gln CTG ctccggaggg ttctgcctac 0 0 69.34 47.76 21.58 Both chr3 8586 22594168 22594098 Gly CCC ctctatagta ttgtggttat 0 0 65.48 53.64 11.84 Both chr3 8587 22590416 22590345 Gln CTG ctccggaggg ttctgcctac 0 0 69.34 47.76 21.58 Both chr3 8591 22569693 22569623 Ala CGC ctctatagtg gttttgggag 0 0 55.09 45.65 9.44 Eufind chr3 8592 22558723 22558653 Gly CCC ctctatagtg ttgtggttat 0 0 65.48 53.64 11.84 Both chr3 8593 22552211 22552140 Gln CTG ctccccaggg ttctgcctag 0 0 70.79 49.21 21.58 Both chr3 8597 22497936 22497863 Asn GTT ccgttccaga ccccgtcctc 0 0 78.61 55.35 23.26 Both chr3 8598 22497376 22497305 Glu TTC atgttgcagt ggtgtatctt 0 0 76.25 53.58 22.67 Both chr3 8601 22472090 22472017 Asn GTT atctccagct tctcccaact 0 0 82.24 58.97 23.27 Both chr3 8602 22461777 22461706 Glu TTC ggcaggtagt ggctggttac 0 0 63.83 48.75 15.08 Both chr3 8612 22148523 22148452 Trp CCA tgtatgggct gatcccctgg 0 0 63.52 55.90 7.62 Eufind chr3 8622 21731558 21731486 Glu TTC tgtagggaat ctaagatccc 0 0 53.06 43.06 10.00 Both chr3 8631 21583852 21583780 Arg CCT ttgggggact ctagatccca 0 0 39.65 33.16 6.49 Both chr3 8642 21360158 21360086 Gly CCC gagaaggact ctggatcctg 0 0 58.31 47.98 10.33 Both chr3 8652 21257145 21257076 Gly CCC cctagggact ctagacccca 0 0 62.56 42.25 20.31 Eufind chr3 8775 18109806 18109735 Met CAT gaactgcgac gtggtgtttt 0 0 68.98 40.96 28.02 Both chr3 8785 17820262 17820190 Gln CTG tagagggact ctagatccca 0 0 49.88 32.48 17.40 Both chr3 8793 17727380 17727303 Gly CCC aacagggact ctaaatcctg 0 0 34.29 24.67 9.62 Both chr3 8805 17558626 17558555 Glu CTC gagagggact ctggatcccc 0 0 47.07 36.74 10.33 Both chr3 8812 17236909 17236837 Gly CCC ttcagggata ctagattcca 0 0 35.68 29.41 6.27 Both chr3 8832 16840182 16840109 Gly CCC ggcatggagt ctagagccca 0 0 25.57 18.05 7.52 Both chr3 8852 16480169 16480097 Gln CTG ctttcacttt ctagatccca 0 0 50.44 41.33 9.11 Both chr3 8894 15746746 15746674 Gly CCC ttgggggacc ctagatctcg 0 0 46.32 39.55 6.77 Both chr3 8908 15524755 15524683 Glu TTC tggcagggaa ctaggatccc 0 0 46.69 36.79 9.90 Both chr3 8914 15234326 15234256 Lys TTT aggaggaaat ctaatatcct 0 0 40.80 34.86 5.94 Both chr3 8943 13962951 13962880 Glu TTC ctttggaagt ctgagatcct 0 0 49.09 39.96 9.13 Both chr3 8965 13648188 13648116 Gly CCC agctgggggt ctagatccca 0 0 38.57 28.57 10.00 Both chr3 8974 13578903 13578831 Arg CCT aacatgggct ctagatcccg 0 0 48.27 36.48 11.79 Both chr3 9022 11281344 11281272 Cys ACA acaacaaact gatccactgg 0 0 55.10 46.34 8.76 Eufind chr3 9101 9113915 9113842 Arg CCT actagagact ctagatccca 0 0 27.21 20.44 6.77 Both chr3 9105 8948842 8948771 Asp GTC gtcgccgccg gccacacacc 0 0 72.92 48.38 24.54 Both chr3 9106 8948000 8947929 Gly TCC gggctgtgta gcgggccgac 0 0 73.26 52.83 20.43 Both chr3 9107 8947627 8947556 Glu CTC gccccgacgc gcctttcttc 0 0 76.61 53.94 22.67 Both chr3 9108 8825514 8825443 Asp GTC gtcgccgccg gccacacacc 0 0 67.28 48.98 18.30 Both chr3 9109 8824689 8824618 Gly TCC gggctgtgta gcgggccgac 0 0 73.26 52.83 20.43 Both chr3 9110 8824316 8824245 Glu CTC gccccgacgc gcctttcttc 0 0 76.61 53.94 22.67 Both chr3 9111 8816058 8815987 Asp GTC gttgccgccg gccacacacc 0 0 71.60 47.06 24.54 Both chr3 9112 8815222 8815151 Gly TCC gggctgtgta gcgggccgac 0 0 73.26 52.83 20.43 Both chr3 9113 8814852 8814781 Glu CTC tctccgacgc gcctttctac 0 0 75.29 53.94 21.35 Both chr3 9118 8741938 8741867 Gly TCC tgctaagcag gggaaacttt 0 0 73.26 52.83 20.43 Both chr3 9119 8740977 8740906 Asp GTC gttgtcgttt gcgaaagact 0 0 72.92 48.38 24.54 Both chr3 9120 8728537 8728464 Asn GTT cccaccgtct aagtgtagca 0 0 84.88 61.61 23.27 Both chr3 9123 8629859 8629788 Asp GTC gttgccgccg gccacacacc 0 0 71.60 47.06 24.54 Both chr3 9124 8629023 8628952 Gly TCC gggctgtgta gcgggccgac 0 0 73.26 52.83 20.43 Both chr3 9125 8628653 8628582 Glu CTC tctccgacgc gcctttctac 0 0 76.61 53.94 22.67 Both chr3 9227 5195824 5195752 Gly CCC ctcagggact ctagaggcca 0 0 50.29 38.69 11.60 Both chr3 9267 3984175 3984104 Asp GTC atagccgccg gcaacacacc 0 0 56.75 39.17 17.58 Both chr3 9276 3881396 3881325 Glu TTC ggggcggggt ctaagatcct 0 0 41.03 33.89 7.14 Both chr3 9288 3596604 3596532 Gly TCC cctggggact ctaagattcc 0 0 50.16 40.93 9.23 Both chr3 9334 1566698 1566627 Pro CGG cgccgagagc aggttttttt 0 0 76.52 54.46 22.06 Both chr3 9344 1429399 1429327 Gly TCC tgtagggact ataagatccc 0 0 34.99 28.05 6.94 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr4 7 240980 241051 Tyr ATA ggtactgact gatcttctgg 0 0 60.02 49.62 10.40 Eufind chr4 21 696802 696873 Cys ACA gagttggact gatcctctgg 0 0 56.26 42.32 13.94 Eufind chr4 123 5359855 5359927 Thr TGT gtcaccccta ctcacttgct 0 0 69.24 61.19 8.05 Eufind chr4 295 8882030 8882102 Trp CCA gggtgggact ctagacccca 0 0 48.56 34.94 13.62 Both chr4 310 9722292 9722363 Cys ACA tattataact gatcctctgg 0 0 63.17 53.96 9.21 Both chr4 323 10081149 10081221 Gly CCC atcaggtact ctagatccca 0 0 55.45 31.43 24.02 Both chr4 418 12402013 12402084 SeC TCA ctggggcacc ttagcatccc 0 0 50.54 0.00 0.00 Eufind chr4 459 13716676 13716748 Gly CCC caggaggact ctagatccca 0 0 51.20 43.26 7.94 Both chr4 477 13979958 13980030 Gly CCC ttcaggaact ctggatccca 0 0 44.05 32.37 11.68 Both chr4 849 25116559 25116632 Asn GTT tttattttgt catctcaccc 0 0 56.05 35.60 20.45 Both chr4 887 26270741 26270813 Gly CCC gtttgagact ctacagccca 0 0 54.08 39.11 14.97 Both chr4 909 27065180 27065251 SeC TCA atttgagggg gatcccctgg 0 0 55.25 0.00 0.00 Eufind chr4 1059 31805162 31805234 Cys GCA ttaatagact atcccctgga 0 0 58.57 51.88 6.69 Eufind chr4 1117 33346202 33346274 Gly CCC tatgggggtt ctagaaccca 0 0 45.98 40.71 5.27 Both chr4 1140 33864268 33864339 Glu TTC aaaggggaat ttaagatccc 0 0 50.31 40.24 10.07 Both chr4 1541 48707072 48707144 Gly TCC ttcagggcct ctaaattcca 0 0 50.29 39.95 10.34 Both chr4 1584 49924983 49925054 Cys GCA tgctggggct gatcccctgg 0 0 50.64 42.03 8.61 Both chr4 1704 53144647 53144719 Arg CCT cacagggact ctagatccca 0 0 43.55 34.85 8.70 Both chr4 1912 60750359 60750430 Ser GGA tatttgggtt gatcccctgg 0 0 55.68 50.06 5.62 Eufind chr4 2020 63774130 63774202 Gly GCC ctattggact ctaagatccc 0 0 55.74 48.55 7.19 Both chr4 2121 66577073 66577144 Glu TTC aacagggaat ctaagatccc 0 0 50.99 37.75 13.24 Both chr4 2168 68181306 68181378 Gly CCC aggcaggacc ctagatccca 0 0 49.32 42.87 6.45 Both chr4 2194 68857508 68857580 Gly CCC tgtggggacc ctggagtttc 0 0 52.01 37.76 14.25 Both chr4 2306 72326941 72327013 Gly TCC aaaagagaat ctaggatcct 0 0 45.30 34.63 10.67 Both chr4 2411 75667379 75667450 Cys GCA tctgagggct gatcccctgg 0 0 55.73 37.62 18.11 Eufind chr4 2521 79511547 79511619 Gly CCC cagtgtgatt ctagatccca 0 0 46.66 39.95 6.71 Both chr4 2552 80445634 80445707 Glu TTC accagggaat ctaagatccc 0 0 38.71 26.57 12.14 Both chr4 2772 87198858 87198929 Ser TGA attcctggct gatcccttgg 0 0 51.24 44.10 7.14 Both chr4 2844 89031809 89031880 Cys ACA gtttaggact gatcctctgg 0 0 56.77 47.93 8.84 Both chr4 2944 91231310 91231382 Glu TTC aagggagcgt ctgagatccc 0 0 46.21 27.97 18.24 Both chr4 3118 95640886 95640958 Gly CCC tcctgggact ctagnnnnnn 0 0 45.71 34.58 11.13 Both chr4 3145 95994627 95994698 Pro AGG aaccatcagt tatttttcct 0 0 75.92 53.85 22.07 Both chr4 3267 98482044 98482116 Gly CCC gtctaggact ctaaagtccc 0 0 46.14 35.43 10.71 Both chr4 3378 101675487 101675558 Cys ACA tataatgact gatcctctgg 0 0 58.45 49.70 8.75 Eufind chr4 3463 103442359 103442430 Gln CTG gtagctgagg agttcctttt 0 0 57.08 42.45 14.63 Both chr4 3598 106528023 106528095 Arg CCT attcacagaa gcaaagtttt 0 0 67.28 54.18 13.10 Both chr4 3669 107629935 107630007 Gly TCC ccctgggact ctaagatcct 0 0 52.32 45.91 6.41 Both chr4 3693 108137353 108137424 Cys GCA attatgggct gatcccccag 0 0 56.37 49.02 7.35 Eufind chr4 3731 108937685 108937757 Trp CCA tagaggagct ctggattctg 0 0 35.62 25.52 10.10 Both chr4 4011 116369804 116369875 Gly CCC atcagagacc atagatccca 0 0 39.26 28.18 11.08 Both chr4 4035 116679513 116679584 Cys GCA agttgtgact tgttttcttc 0 0 75.53 57.60 17.93 Both chr4 4037 116690900 116690971 Cys GCA acacagatct tgttaacact 0 0 77.65 58.48 19.17 Both chr4 4038 116692200 116692271 Cys GCA agtcacaaga gctttgctga 0 0 74.20 55.02 19.18 Both chr4 4047 116824235 116824306 Cys GCA tataagcaag caagtaagtc 0 0 74.20 55.02 19.18 Both chr4 4048 116826499 116826570 Cys GCA taacaagtaa actacactgg 0 0 69.63 50.39 19.24 Both chr4 4049 116827886 116827957 Cys GCA taataagtaa gccatattgg 0 0 74.20 55.02 19.18 Both chr4 4050 116836769 116836840 Cys GCA catcacagaa acttattctt 0 0 71.19 49.16 22.03 Both chr4 4051 116840891 116840962 Cys GCA taccaggtca cctttttctc 0 0 74.20 55.02 19.18 Both chr4 4052 116863947 116864018 Cys GCA acttacatca tgctgtcctt 0 0 74.20 55.02 19.18 Both chr4 4061 117003365 117003437 Gly ACC ccctgggact ctaagatccc 0 0 50.18 42.58 7.60 Both chr4 4063 117038765 117038836 Cys GCA agaacggcct gctgattttc 0 0 74.26 55.02 19.24 Both chr4 4265 120631359 120631439 Gly ACC ggagggggtt gaccccttgg 120631395 120631404 49.30 41.59 7.71 Both chr4 4287 121361806 121361877 Undet ??? ttatgggaat ctaagatccc 0 0 44.33 33.99 10.34 Both chr4 4326 122589726 122589797 Gly CCC agacgggacc ctggacccca 0 0 48.61 40.26 8.35 Both chr4 4363 124124521 124124592 Cys GCA tgttaccatt gatcccctgg 0 0 35.26 29.43 5.83 Both chr4 4453 121343964 121343892 Arg CCT ctatggtact ctagatctca 0 0 52.32 40.77 11.55 Both chr4 4527 119771657 119771585 Gly CCC attcggggct ctagatccca 0 0 56.77 43.70 13.07 Both chr4 4556 119338292 119338220 Glu CTC cctggggact ctagatcccc 0 0 51.02 41.17 9.85 Both chr4 4570 119145290 119145218 Glu TTC cctagagaat ctaagatcct 0 0 48.88 35.78 13.10 Both chr4 4637 117548974 117548903 Cys ACA ttcttggact gatcctgtgg 0 0 58.45 49.70 8.75 Eufind chr4 4656 117035318 117035247 Cys GCA acttacatca gctgcccttc 0 0 74.20 55.02 19.18 Both chr4 4663 116860226 116860155 Cys GCA agaacggcct gctgattttc 0 0 74.26 55.02 19.24 Both chr4 4664 116855339 116855268 Cys GCA tgtggagcaa ggcaacttcc 0 0 70.63 53.83 16.80 Both chr4 4678 116724648 116724577 Cys GCA tataacatta tcttatgctc 0 0 74.26 55.02 19.24 Both chr4 4680 116718501 116718430 Cys GCA tttcccagta ataattatcc 0 0 73.73 55.81 17.92 Both chr4 4682 116712416 116712345 Cys GCA gtgggtggcc gtgccttgct 0 0 74.20 55.02 19.18 Both chr4 4683 116698937 116698866 Cys GCA tttgttacct ttgagagttc 0 0 71.36 59.17 12.19 Both chr4 4684 116697263 116697192 Cys GCA tagcatggca actcttttag 0 0 71.19 49.16 22.03 Both chr4 4721 116096332 116096260 Glu CTC gatccggact ctagatccca 0 0 38.59 30.59 8.00 Both chr4 4902 111362165 111362093 Val AAC taacatgcag acactggtag 0 0 87.13 62.01 25.12 Both chr4 4912 110866347 110866275 Gly CCC atgcgggact ctagatccca 0 0 28.32 23.12 5.20 Both chr4 4980 109236757 109236685 Lys TTT tatagggact ttaagatacc 0 0 50.50 30.23 20.27 Both chr4 5002 108746847 108746775 Gly CCC ttcaggggct ctagatccca 0 0 54.28 41.04 13.24 Both chr4 5023 108411535 108411463 Glu CTC tgggggggtt ctagatccca 0 0 61.39 45.59 15.80 Both chr4 5109 107118586 107118514 Gly CCC tccatggact ctagatccca 0 0 34.28 22.50 11.78 Both chr4 5201 105655989 105655917 Lys TTT tatggcgaat ttaaggtcct 0 0 56.22 39.13 17.09 Both chr4 5277 103625780 103625709 Arg GCG gtgctctgct gagccctgga 0 0 55.17 49.00 6.17 Eufind chr4 5295 103198205 103198133 Gly CCC gccagggact ctaggatccc 0 0 53.63 45.92 7.71 Both chr4 5415 100460552 100460481 Ser GGA atatgggact gatcccctgg 0 0 62.37 53.61 8.76 Eufind chr4 5462 99418748 99418676 Gly TCC cagaagacct taagatccca 0 0 27.13 19.92 7.21 Both chr4 5508 98684374 98684304 Gly CCC tagagggact ctagatccca 0 0 38.19 24.35 13.84 Both chr4 5526 98352135 98352064 Glu TTC aaaggtgatt ctaagatccc 0 0 57.74 42.55 15.19 Both chr4 5583 97198088 97198016 Glu TTC tagagggaat ctaagatcct 0 0 47.06 33.25 13.81 Both chr4 5651 96129538 96129466 Gly CCC ttgggggatt ctggatccca 0 0 45.77 31.90 13.87 Both chr4 5652 96122958 96122886 Arg CCT aatagagact ctagctccac 0 0 26.83 21.52 5.31 Both chr4 5726 94763110 94763039 Lys TTT gtatgagagt ctgagatcct 0 0 56.53 42.26 14.27 Both chr4 5777 93312796 93312725 Arg ACG atctaggatt aatcctctgg 0 0 57.31 48.55 8.76 Eufind chr4 5910 89866077 89866005 Arg CCT gccctgggct ctagatccca 0 0 50.42 36.39 14.03 Both chr4 6212 82053861 82053789 Gly CCC ttcagggact ctagatctca 0 0 37.03 22.28 14.75 Both chr4 6219 81858380 81858308 Gly CCC tgtcaggact ctaagattgc 0 0 43.16 29.86 13.30 Both chr4 6355 78120658 78120586 Lys CTT agacaccttt tagttagcgt 0 0 78.78 60.13 18.65 Both chr4 6366 77437422 77437349 Ile AAT ctcctcaaat gaaacttaca 0 0 56.73 43.21 13.52 Both chr4 6479 74467229 74467158 Cys GCA tgtgggtgcc gatcccctgg 0 0 56.56 48.84 7.72 Both chr4 6491 73979597 73979526 Glu TTC aagctggaat ctaagatcct 0 0 54.84 46.97 7.87 Both chr4 6664 69055048 69054976 Trp CCA tgctaggact ctacatgcca 0 0 44.20 37.05 7.15 Both chr4 6950 61115898 61115827 Ser GGA tatttgggtt gatcccctgg 0 0 57.40 51.78 5.62 Eufind chr4 7208 52772366 52772294 Cys ACA ctgttcatac ataccctgga 0 0 58.67 43.09 15.58 Eufind chr4 7227 52261065 52260993 Lys CTT acaaaggact ctagatctca 0 0 45.85 39.69 6.16 Both chr4 7234 51958328 51958256 Glu TTC atctggaaat ctaagatttc 0 0 39.26 24.07 15.19 Both chr4 7336 48964256 48964185 Met CAT tttgtttgtc agtgtcctct 0 0 51.57 30.84 20.73 Both chr4 7444 45440714 45440642 Gly CCC ttgtgggact ccaggtccca 0 0 41.05 34.44 6.61 Both chr4 7593 40586891 40586820 Cys ACA ctctgcatat gatcccctgg 0 0 49.40 43.43 5.97 Both chr4 7596 40526829 40526758 Cys ACA ctctgcatat gatcccctgg 0 0 49.40 43.43 5.97 Both chr4 7691 36271202 36271131 Cys GCA atacatggct gatcccctgg 0 0 55.87 47.04 8.83 Both chr4 7713 35308850 35308778 SeC TCA agacagggct aacctctgga 0 0 53.86 0.00 0.00 Eufind chr4 7855 31147729 31147658 Cys GCA tttaggggct gattcactga 0 0 55.66 46.59 9.07 Eufind chr4 7857 31144191 31144120 Cys GCA tttaggggct gattcactga 0 0 55.66 46.59 9.07 Eufind chr4 8059 23794171 23794100 Cys GCA ataatgggtt gatcccctgg 0 0 63.00 55.21 7.79 Eufind chr4 8096 22488592 22488510 Leu TAA ggaagtaggc caacaggtcc 0 0 46.41 26.64 19.77 Both chr4 8235 17387706 17387634 Cys GCA gtcacgggct ctcccctgga 0 0 55.77 44.93 10.84 Eufind chr4 8275 16236613 16236541 Gly CCC ttaaaaaatt ctagatcctg 0 0 32.70 26.46 6.24 Both chr4 8423 13190255 13190165 Gly CCC ttgtgagact ctagacccca 13190218 13190198 28.49 19.92 8.57 Both chr4 8532 10603336 10603264 Val TAC gtatgggaat taaatcccac 0 0 42.68 23.28 19.40 Both chr4 8577 9381891 9381819 Gly CCC ttttgggact ctagatccca 0 0 44.37 34.03 10.34 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr5 17 780535 780607 Cys GCA tcagtaggct atcccctgga 0 0 56.94 39.39 17.55 Eufind chr5 134 4759686 4759757 Tyr GTA ccaaatagct gatcccctgg 0 0 58.66 49.75 8.91 Both chr5 203 6538988 6539059 Glu TTC tgttgggaat ctaagaattt 0 0 49.07 37.79 11.28 Both chr5 256 8093764 8093836 Gly CCC tattgggact ctagatccca 0 0 32.82 21.89 10.93 Both chr5 438 13420074 13420145 Cys ACA tctggagact gatctcctgg 0 0 40.83 24.22 16.61 Both chr5 595 18595453 18595525 Cys GCA ctattgttgt atcccctgga 0 0 42.58 30.70 11.88 Both chr5 644 20984712 20984784 Gly CCC tttagggact ctagatccct 0 0 58.02 44.14 13.88 Both chr5 674 21757226 21757298 Lys TTT tatctctaat tctctgtttg 0 0 63.60 50.05 13.55 Eufind chr5 728 22913433 22913504 Cys ACA tttagggact gatctcctgg 0 0 57.04 46.58 10.46 Eufind chr5 828 25684460 25684532 Gly CCC cctagcatga agagatccca 0 0 45.55 40.27 5.28 Both chr5 906 27358943 27359015 Gly CCC tgcaggaact ctcgatccca 0 0 34.57 28.99 5.58 Both chr5 913 27479921 27479994 Gly TCC tctagggaat ctgagatccc 0 0 42.13 29.73 12.40 Both chr5 981 29204495 29204567 Gly TCC tgtcagaaat ccaagatcct 0 0 30.75 22.75 8.00 Both chr5 1001 29665180 29665252 Val TAC caccaggact ctaagatccc 0 0 47.06 30.17 16.89 Both chr5 1021 29923278 29923350 Glu TTC tcttgggaat ctaagatccc 0 0 37.27 31.35 5.92 Both chr5 1095 31653996 31654067 Glu TTC gagtgggagt ctaagattcc 0 0 48.33 37.42 10.91 Both chr5 1117 32140816 32140888 Gly TCC gagaggggct ctaatatccc 0 0 53.92 47.49 6.43 Both chr5 1123 32221407 32221479 Gly CCC tccagggact ctagactcca 0 0 61.55 46.31 15.24 Both chr5 1206 33684012 33684084 Gly CCC tacagggatg ctagatccca 0 0 42.24 31.75 10.49 Both chr5 1211 33732724 33732796 Gly TCC tagagggact ctaggacccc 0 0 40.44 31.56 8.88 Both chr5 1335 37553135 37553206 Cys ACA gaacgagtct gatcacctgg 0 0 57.08 50.09 6.99 Both chr5 1675 47362529 47362601 Gly TCC tggagggatt ctacaatctc 0 0 53.92 35.00 18.92 Both chr5 1709 48132571 48132641 Cys GCA agtcagggct gatccccaga 0 0 55.00 49.51 5.49 Eufind chr5 1818 51038922 51038993 Cys GCA aataggggct gatcccctgg 0 0 59.69 53.98 5.71 Both chr5 1905 53057886 53057957 Arg GCG aggacaccct gatcccctgg 0 0 40.19 32.44 7.75 Both chr5 1984 54724004 54724076 Glu CTC tatagggaat ttaagatgct 0 0 38.92 31.52 7.40 Both chr5 1992 54888095 54888167 Gly TCC gcaatggact gatgtcacat 0 0 30.52 23.26 7.26 Both chr5 2122 58785546 58785617 Gly GCC atcactagct gatcccctga 0 0 56.86 49.07 7.79 Eufind chr5 2174 60021446 60021518 Gly CCC cttcaggact ctagatccca 0 0 46.77 38.78 7.99 Both chr5 2203 60763572 60763644 Gly CCC ttctgggact ctagatccca 0 0 29.67 24.66 5.01 Both chr5 2208 60825893 60825965 Gly CCC gaggggggat ctaaatccca 0 0 53.62 48.23 5.39 Both chr5 2211 60832415 60832486 Glu TTC aataaggaac ctaagatcct 0 0 42.50 36.45 6.05 Both chr5 2227 61242053 61242124 Glu TTC atcaaggagt ttgacatccc 0 0 28.37 20.01 8.36 Both chr5 2229 61258402 61258475 Gly CCC agcaagggct ctagatccca 0 0 55.46 39.61 15.85 Eufind chr5 2241 61459553 61459625 Gly CCC agtagggact ctagaatcca 0 0 43.91 37.09 6.82 Both chr5 2359 64870209 64870280 Asp GTC gtcgtgcaat gcactgaaga 0 0 72.92 48.38 24.54 Both chr5 2361 64947860 64947932 Glu TTC aataggcaat ctaagatcct 0 0 28.95 21.48 7.47 Both chr5 2467 67441127 67441198 Gly CCC actagaaatt ctcgatcctg 0 0 31.85 18.68 13.17 Both chr5 2468 67443721 67443792 Asp GTC atgaagcagc gttggtactt 0 0 74.76 50.21 24.55 Both chr5 2506 68687745 68687817 Gly CCC tcttgggact gtagattcca 0 0 53.54 37.65 15.89 Both chr5 2578 70571318 70571390 Glu TTC cacagggact ctaagatccc 0 0 54.77 41.45 13.32 Both chr5 2680 72558254 72558325 Arg CCT ttcagggact ctagatccca 0 0 47.22 32.65 14.57 Both chr5 2694 72803927 72803998 Glu TTC ccctgggagt ctgagattcc 0 0 59.70 49.07 10.63 Eufind chr5 2751 73789445 73789517 Gly TCC ttatgggact ccaagatcct 0 0 43.86 37.23 6.63 Both chr5 2780 74479964 74480037 Arg TCT gcctgagact ctagatacca 0 0 41.16 34.24 6.92 Both chr5 2829 75949884 75949956 Gly CCC gtgtgggact ctagatccca 0 0 54.79 38.70 16.09 Both chr5 2873 77176813 77176885 Arg TCT ccgtggcact ctaagatccc 0 0 48.59 39.12 9.47 Both chr5 2875 77214741 77214813 Gly CCC cccagtgact ctaggtctga 0 0 39.23 31.79 7.44 Both chr5 2880 77403221 77403293 Gly CCC tcctgggacg ttagatccta 0 0 50.47 39.65 10.82 Both chr5 2900 78072613 78072685 Gly CCC tacagggact ctagatccca 0 0 40.19 30.25 9.94 Both chr5 2902 78087303 78087373 Glu TTC aaaggaaatt gctaagatcc 0 0 28.40 14.66 13.74 Both chr5 3031 81055299 81055375 Gly TCC cagtgggact ctagatccca 0 0 37.18 28.45 8.73 Both chr5 3039 81134991 81135063 Glu TTC tttcaggaat ctaagacccc 0 0 34.37 28.16 6.21 Both chr5 3048 81354204 81354276 Glu TTC tttcaggaat ctaagacccc 0 0 32.08 25.87 6.21 Both chr5 3095 82986884 82986970 Gly TCC tgtcaggact ctaagatcca 82986921 82986931 28.08 11.67 16.41 Both chr5 3501 93927523 93927595 Glu CTC agtagggaat ctaagatccc 0 0 49.74 33.22 16.52 Both chr5 3591 96029533 96029615 Cys GCA acattgggct gatcccctgg 0 0 46.75 36.38 10.37 Both chr5 3783 100034458 100034529 Cys ACA ctacaatact gatcccctgg 0 0 58.62 49.91 8.71 Eufind chr5 3795 100259832 100259904 Arg CCT aataaggact ctagatacca 0 0 44.38 32.26 12.12 Both chr5 3843 100945330 100945402 Gly CCC tgtgggggct caagatccca 0 0 41.64 35.14 6.50 Both chr5 3856 101151794 101151865 Cys GCA gctatgggct gatcccctgg 0 0 60.49 51.25 9.24 Eufind chr5 3890 101643772 101643844 Gly CCC gagagggact ttagatctca 0 0 38.94 29.07 9.87 Both chr5 3892 101679530 101679602 Gly CCC gagagggact ttagatctca 0 0 38.94 29.07 9.87 Both chr5 3893 101695559 101695630 Cys ACA tggatgggct gatcctctgg 0 0 44.73 34.21 10.52 Both chr5 3936 102448367 102448439 Gly CCC agggggaact ctagagccca 0 0 41.76 36.45 5.31 Both chr5 3970 103372230 103372302 Gly CCC tcttggaact ttagatcgca 0 0 31.63 21.01 10.62 Both chr5 4038 104126170 104126242 Trp CCA ttctgggact ctagatccca 0 0 48.55 34.65 13.90 Both chr5 4073 105019822 105019894 Gln TTG atgaggaaat ctaagatccc 0 0 54.29 28.71 25.58 Both chr5 4131 106279282 106279354 Gly CCC gttagggatt ctagatccca 0 0 43.71 30.79 12.92 Both chr5 4227 108627759 108627831 Glu TTC tctagggaat ctaagatccc 0 0 57.11 41.36 15.75 Eufind chr5 4313 110997273 110997345 Glu TTC gagggggact caatgatcct 0 0 45.60 38.50 7.10 Both chr5 4404 112220799 112220871 Gly CCC ctgggggact ctagatccca 0 0 51.38 45.69 5.69 Both chr5 4418 112311776 112311848 Gly TCC tccagggact ctagacccca 0 0 39.34 33.65 5.69 Both chr5 4483 113384896 113384968 Gly CCC actggagact ctagatccta 0 0 49.02 38.01 11.01 Both chr5 4487 113491728 113491799 Glu CTC actgaggact ttagatccca 0 0 39.06 23.19 15.87 Both chr5 4498 113609278 113609350 Gly CCC cattaggact ctagatccca 0 0 53.27 44.78 8.49 Both chr5 4580 115536488 115536559 Tyr GTA tttatggact ggtcctctgg 0 0 57.05 48.30 8.75 Eufind chr5 4591 115947496 115947569 Gly TCC ttgagggagt taagatccca 0 0 43.81 33.35 10.46 Both chr5 4616 116571187 116571259 Gly CCC ccaggagact tcaattccac 0 0 43.61 38.60 5.01 Both chr5 4677 117600125 117600195 Glu TTC ttacaggaat ctgagatccc 0 0 46.49 37.06 9.43 Both chr5 4702 117964330 117964402 Gly CCC aaaagggact ctagatccca 0 0 55.01 39.72 15.29 Both chr5 4772 119161956 119162028 Gly CCC aagatggact ctagattcca 0 0 44.89 32.33 12.56 Both chr5 4773 119175227 119175299 Glu CTC tttgggaact ctagatccca 0 0 49.89 39.00 10.89 Both chr5 4809 119428304 119428376 Trp CCA aagaggaact taagatcccc 0 0 45.00 39.27 5.73 Both chr5 4826 119785917 119785989 Met CAT ccatgggatt ctagatccca 0 0 63.43 50.10 13.33 Both chr5 4835 120157749 120157820 Glu TTC ataaagaact ctaagatccc 0 0 49.24 36.34 12.90 Both chr5 4865 120543966 120544038 Gly CCC atgtgggact ctagatcgca 0 0 45.01 38.03 6.98 Both chr5 4870 120589351 120589423 Gly CCC aaaggggact ctagagccca 0 0 55.68 45.78 9.90 Eufind chr5 4891 120902343 120902415 Gly CCC tcgggggact ctgctgctgc 0 0 44.07 34.92 9.15 Both chr5 4914 121374003 121374074 Gly CCC ggatgggtct ctagaccccg 0 0 24.04 15.54 8.50 Both chr5 5024 123381315 123381387 Gly GCC tgaggggagt ctgagatcct 0 0 38.82 32.95 5.87 Both chr5 5094 125735566 125735494 Gly CCC ttcagtgact ctacatcccc 0 0 40.66 33.98 6.68 Both chr5 5147 123788974 123788902 Gly CCC tggagggact ctacaatccc 0 0 41.55 35.20 6.35 Both chr5 5240 121461940 121461869 Cys GCA ctgatgggct gatcccctgg 0 0 58.71 48.75 9.96 Eufind chr5 5246 121258068 121257997 Gly CCC ggatgggtct ctagaccccg 0 0 24.04 15.54 8.50 Both chr5 5259 121045181 121045109 Gly CCC aaatgggact ctagacccca 0 0 39.02 27.18 11.84 Both chr5 5262 121025927 121025855 Gly CCC cctggggcct ctagatccca 0 0 40.96 35.02 5.94 Both chr5 5281 120776571 120776499 Glu CTC tcttagggct atagatccca 0 0 48.69 34.96 13.73 Both chr5 5347 119598805 119598733 Gly TCC tttgaggact ctaagatccc 0 0 57.30 45.95 11.35 Both chr5 5412 118619180 118619108 Gly CCC gcagggggct ctagatccca 0 0 43.38 36.90 6.48 Both chr5 5441 118068989 118068917 Gly CCC ttcagggact ctagatccca 0 0 53.54 45.05 8.49 Both chr5 5544 116107804 116107733 Glu TTC tattgggaat ctagatccca 0 0 62.02 47.99 14.03 Both chr5 5618 114430852 114430780 Gly ACC ccagaggact ctagatccca 0 0 39.12 25.17 13.95 Both chr5 5622 114389042 114388970 Glu CTC actgaggaat ctgagatcca 0 0 60.75 52.81 7.94 Eufind chr5 5644 114232498 114232426 Gly TCC ctctcccgac ctaagatctg 0 0 40.55 30.22 10.33 Both chr5 5655 113830391 113830311 Gly TCC tgtagggacc ctaagatccc 0 0 42.61 36.71 5.90 Both chr5 5736 112552075 112552003 Gly TCC gcaagggact ctaagatccc 0 0 53.93 48.51 5.42 Both chr5 5748 112420901 112420829 Glu TTC ctagaggact ctaagatccc 0 0 45.37 34.77 10.60 Both chr5 5819 111445376 111445304 Glu CTC cccagggact ccagagattc 0 0 45.09 28.79 16.30 Both chr5 5831 111298769 111298697 Gly CCC gggagggact ctagatccca 0 0 49.44 37.91 11.53 Both chr5 5980 108336954 108336882 Gly CCC cacagggact ctaagatccc 0 0 44.08 34.07 10.01 Both chr5 5984 108304550 108304478 Gly CCC cacagggact ctaagatatt 0 0 40.16 30.15 10.01 Both chr5 6116 105107372 105107300 Gly CCC gaaagggact ctagatccca 0 0 45.88 34.72 11.16 Both chr5 6192 103873816 103873745 Tyr GTA ctcaagggct gataccccga 0 0 28.30 17.28 11.02 Both chr5 6383 100487464 100487393 Cys GCA gcagggggct gattacctgg 0 0 45.61 38.10 7.51 Both chr5 6476 98081855 98081784 Cys ACA gttttggact gatcccctgg 0 0 57.74 47.66 10.08 Eufind chr5 6483 97934260 97934188 Cys ACA aggatcggct gatccctgga 0 0 43.26 34.67 8.59 Both chr5 6519 97246373 97246300 Gly CCC tatagggact ctagatcctg 0 0 40.52 26.57 13.95 Both chr5 6590 95566402 95566330 Gly CCC gacaggtact atagatcctg 0 0 48.10 31.16 16.94 Both chr5 6607 95121376 95121305 Trp CCA ctgtagggct gatcccctgg 0 0 59.59 50.34 9.25 Both chr5 6654 94060370 94060298 Gly CCC tagagggact ctagattgta 0 0 57.54 39.23 18.31 Both chr5 6666 93765542 93765470 Lys TTT ccagggcact gcatggttcc 0 0 71.27 54.25 17.02 Both chr5 6673 93560958 93560887 Gly CCC ggcaagaacc ctaagatacc 0 0 62.12 38.15 23.97 Both chr5 6842 90492478 90492406 Gly CCC tctgggggct ctagatccca 0 0 43.12 37.28 5.84 Both chr5 6875 89840132 89840060 Gly TCC gtcagggact ctaagatcct 0 0 47.59 39.65 7.94 Both chr5 7135 82065803 82065731 Gly TCC tctagggact ctagatccca 0 0 36.85 21.84 15.01 Both chr5 7191 80571049 80570978 Glu TTC tgattggggc ctatcctgca 0 0 68.68 51.17 17.51 Both chr5 7241 78686042 78685970 Arg CCT atatgtaaat gtgtcagggc 0 0 59.30 46.36 12.94 Both chr5 7271 78101166 78101094 Gly CCC tacagggact ctagatccca 0 0 40.19 30.25 9.94 Both chr5 7402 75121036 75120966 Tyr GTA ccagctccct gatctcctgg 0 0 56.10 39.15 16.95 Both chr5 7415 74773644 74773572 Gly CCC ctgagggact ttagatccca 0 0 45.72 33.69 12.03 Both chr5 7500 72915262 72915191 Ala TGC tagagcactt tttgatttct 0 0 74.98 50.02 24.96 Both chr5 7524 72185431 72185359 Gln CTG ttagggaatt ccagatctca 0 0 34.96 28.38 6.58 Both chr5 7719 67615036 67614964 Gly CCC agctgggact ctggatccta 0 0 42.47 34.07 8.40 Both chr5 7781 66118341 66118270 Gly TCC tccagggact actaagatcc 0 0 61.60 48.80 12.80 Both chr5 7787 66008243 66008172 Gly TCC tccagggact actaagatcc 0 0 61.60 48.80 12.80 Both chr5 7823 65017985 65017914 Asp GTC gtcgtgcaat gcactgaaga 0 0 72.92 48.38 24.54 Both chr5 7898 62728372 62728300 Gly TCC tggagggaat ctaacatccc 0 0 35.17 21.99 13.18 Both chr5 7910 62420357 62420285 Gly CCC ctttggaagt ctagatcctc 0 0 52.06 42.56 9.50 Both chr5 7915 62287647 62287575 Gly CCC ctttggaagt ctagatcctc 0 0 52.60 40.11 12.49 Both chr5 7923 62197655 62197583 Gly CCC cctcaggact ctagatccca 0 0 34.67 24.05 10.62 Both chr5 7925 62178321 62178252 Gly TCC ttacagaact ctagatccca 0 0 32.22 26.53 5.69 Both chr5 7967 61705470 61705389 Ser CGA ggtcttggaa ggcgcttttt 0 0 89.14 63.50 25.64 Both chr5 7976 61548833 61548761 Glu TTC aactgggaat ttaaaatccc 0 0 39.61 29.05 10.56 Both chr5 7985 61375432 61375361 Glu TTC cacagggaat ctaagatccc 0 0 46.18 37.06 9.12 Both chr5 8020 60566555 60566484 Gly CCC ctcagggact ctagattcca 0 0 36.57 29.50 7.07 Both chr5 8031 60405254 60405183 Glu TTC gcaggagaac ctaagatccc 0 0 56.42 46.60 9.82 Both chr5 8100 58271042 58270970 Trp CCA tactaacact ctgcaactag 0 0 48.93 32.20 16.73 Both chr5 8220 54793966 54793894 Ala TGC acaatgggct ctaagatcct 0 0 27.94 21.26 6.68 Both chr5 8264 53577304 53577233 Phe AAA ctatgggact gatcccctgg 0 0 56.04 48.61 7.43 Both chr5 8375 51500668 51500596 Lys CTT taatgaaaga atctcttttc 0 0 62.60 49.08 13.52 Eufind chr5 8584 46499144 46499073 Cys GCA aagttgggct gatcccctgg 0 0 60.41 51.70 8.71 Eufind chr5 8694 42777509 42777437 Gln CTG gttactgatt tttgttaagc 0 0 60.90 46.26 14.64 Both chr5 8818 38613459 38613388 Glu TTC taacctctca ttaagatatc 0 0 52.26 35.43 16.83 Both chr5 8829 38035396 38035324 Gly CCC tttggggact ctagacccca 0 0 51.90 36.47 15.43 Both chr5 8889 36407784 36407712 Gly CCC cagggggacg ctagagccca 0 0 52.78 37.90 14.88 Both chr5 9015 32995725 32995654 Cys GCA ctcgaggcct ggtccgctgg 0 0 56.45 46.07 10.38 Eufind chr5 9084 31663926 31663854 Gly CCC agcggggatt ctagtttcca 0 0 26.39 17.25 9.14 Both chr5 9094 31514363 31514291 Gly CCC tcgagggact ctagatccca 0 0 56.70 42.13 14.57 Eufind chr5 9100 31286104 31286032 Gly CCC cctagggact ctagacccca 0 0 56.66 37.71 18.95 Both chr5 9126 30650903 30650832 Gly CCC gcgtggggct gtagctttcc 0 0 30.13 25.10 5.03 Both chr5 9183 29563362 29563290 Arg TCT tttgaggact ctaagatccc 0 0 40.80 33.48 7.32 Both chr5 9197 29347473 29347401 Glu TTC cacagggaaa ctaaagatcc 0 0 45.78 38.30 7.48 Both chr5 9289 27325034 27324962 Gly CCC agacaggact ctaagatctc 0 0 47.01 36.18 10.83 Both chr5 9404 23664052 23663981 Cys ACA nnnntagact gatcccctgg 0 0 54.01 47.69 6.32 Both chr5 9756 11205798 11205726 Glu TTC tgccagggac ctgagatccc 0 0 34.90 27.72 7.18 Both chr5 9758 11180743 11180671 Gly CCC ctttgagact ctagatccta 0 0 31.59 23.48 8.11 Both chr5 9766 11001628 11001556 Gln CTG aataggggct ctagagccgc 0 0 48.74 40.73 8.01 Both chr5 9801 10461926 10461854 Gly CCC cctggggact ctagattcca 0 0 37.39 30.85 6.54 Both chr5 9802 10451389 10451318 Glu CTC taatgggaat ctaaaatctc 0 0 46.37 38.36 8.01 Both chr5 9806 10406338 10406266 Arg TCT aggtgggaac ctagatttca 0 0 39.28 31.29 7.99 Both chr5 10148 913547 913475 Glu TTC agtcctgggg ctaagagctc 0 0 49.95 40.49 9.46 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr6 125 5775391 5775463 Gly CCC ttaagggact ctaggtccca 0 0 47.72 29.02 18.70 Both chr6 134 6128581 6128653 Gly CCC aatggggact ctagatccca 0 0 55.30 38.10 17.20 Both chr6 163 7298644 7298715 Glu TTC gcatgggagt ctaagattct 0 0 57.71 41.77 15.94 Eufind chr6 438 17442315 17442386 Ser GGA ctaaggggct cattccctgg 0 0 59.16 50.45 8.71 Eufind chr6 483 18536969 18537041 Gly CCC ttagaggact ctagatccca 0 0 44.89 34.55 10.34 Both chr6 492 18734252 18734324 Gly CCC tttagggact ctagatccca 0 0 56.23 37.53 18.70 Both chr6 639 23604882 23605004 Gln CTG tataggcact ctagatccca 23604917 23604968 20.94 12.15 8.79 Both chr6 640 23651667 23651739 Gly TCC tatagagaag ctaagatccc 0 0 50.54 32.01 18.53 Both chr6 758 27393993 27394064 Glu TTC gcttgggaac ctaagatccc 0 0 57.88 35.54 22.34 Both chr6 915 32041000 32041073 Gly CCC tgaagggact ctagatccta 0 0 29.12 15.12 14.00 Both chr6 938 32749488 32749559 Glu TTC cttagggaat ctgagatctg 0 0 60.39 51.86 8.53 Both chr6 1067 37973401 37973472 Glu TTC agcagagaat ctaagatccc 0 0 45.37 34.36 11.01 Both chr6 1078 38358269 38358341 Gly CCC atataggact ctggatccca 0 0 32.40 23.29 9.11 Both chr6 1241 44807614 44807685 Ser GGA ggagagggct gatcccctgg 0 0 51.41 45.05 6.36 Both chr6 1311 46755846 46755918 Ala TGC gatgaggatt ctatatccca 0 0 58.06 43.85 14.21 Both chr6 1317 46863999 46864071 Gly CCC gcctggaact ctaaacccac 0 0 40.34 30.34 10.00 Both chr6 1592 57267578 57267648 Glu CTC gcaaggaaat ctaaaattcc 0 0 34.47 24.60 9.87 Both chr6 1640 59129146 59129217 Cys GCA agccagaact gatcccctgg 0 0 56.60 47.85 8.75 Eufind chr6 1682 60140814 60140886 Arg CCT tgtaggaact ctacatccca 0 0 36.55 28.97 7.58 Both chr6 1774 61916219 61916290 Cys GCA agtagggact gaccccctga 0 0 44.21 36.88 7.33 Both chr6 1779 61987169 61987242 Lys CTT aatagggact ctcctttcag 0 0 39.62 29.02 10.60 Both chr6 1794 62263073 62263145 Glu TTC ttcagggaat ctaagatccc 0 0 47.03 39.29 7.74 Both chr6 1806 62506693 62506765 Glu TTC tattgggaat ctaggatcct 0 0 51.54 32.76 18.78 Both chr6 1823 62845461 62845533 Trp CCA aaacaggact ctagatccta 0 0 28.55 23.46 5.09 Both chr6 1885 64857606 64857677 Cys ACA agcagtgatt gatcctctgg 0 0 58.45 51.53 6.92 Eufind chr6 2027 69501263 69501335 SeC TCA tactgggact ctaggatccc 0 0 61.39 0.00 0.00 Both chr6 2069 70295380 70295452 Gly TCC ttgagggact caagagctga 0 0 35.88 24.98 10.90 Both chr6 2254 74707463 74707535 Gly CCC ttggaggact ctagatcccc 0 0 35.62 26.39 9.23 Both chr6 2312 76325823 76325894 Cys GCA tccctgggat atcccctgga 0 0 46.31 34.33 11.98 Both chr6 2313 76394728 76394799 Gly TCC ttccctttca gtgggccgac 0 0 71.29 50.67 20.62 Both chr6 2513 85623486 85623556 Leu CAG taaaagaggt aggtatccgc 0 0 42.60 33.66 8.94 Both chr6 2755 92053973 92054044 Cys GCA acttggggcc gatcccctgg 0 0 46.82 36.42 10.40 Both chr6 2761 92193253 92193325 Glu TTC gagaatggaa ccaagatcct 0 0 43.58 30.06 13.52 Both chr6 2789 92920241 92920313 Ser GCT cagaggaact tgaagaccca 0 0 50.46 44.94 5.52 Both chr6 2895 94817156 94817228 Gly CCC tttagggact ctagatccca 0 0 63.78 46.61 17.17 Both chr6 2908 94952293 94952364 Ala TGC atagagggta catttttggg 0 0 75.09 51.50 23.59 Both chr6 3061 98507652 98507724 Gly CCC cagagagact ctagatccca 0 0 58.88 41.62 17.26 Both chr6 3219 101100410 101100482 Arg CCT agcagggact cgagatccca 0 0 43.90 34.79 9.11 Both chr6 3348 103801108 103801179 Glu TTC gtgagggaat gtaagacccc 0 0 49.65 32.11 17.54 Both chr6 3414 105314489 105314560 Cys GCA acatacagct gatctcctgg 0 0 55.71 48.71 7.00 Eufind chr6 3436 105499867 105499939 Gly TCC tttggggact ctagatccta 0 0 68.51 48.20 20.31 Both chr6 3563 107776343 107776415 Gly CCC tcacagggac ctagtgccga 0 0 58.26 41.45 16.81 Both chr6 3590 108601067 108601139 Gly CCC gagaggactt ctaggcccct 0 0 51.04 40.00 11.04 Both chr6 3631 109468299 109468372 Gly CCC aacagggacc ctgaatccca 0 0 52.43 33.31 19.12 Both chr6 3636 109522474 109522546 Gly CCC agaagggact ctagagccca 0 0 55.13 42.80 12.33 Both chr6 3705 110873349 110873420 Cys GCA gtaactggct gatcccctgg 0 0 37.85 26.57 11.28 Both chr6 4156 120880809 120880881 Gly CCC gggcagggac ctacatctcg 0 0 27.26 22.17 5.09 Both chr6 4179 121335711 121335783 Gly CCC aagtgggaca ctagacctca 0 0 41.58 34.12 7.46 Both chr6 4226 122482634 122482715 Leu TAA tattcttacc gtagtgactt 0 0 48.66 36.45 12.21 Both chr6 4294 120999207 120999137 Cys GCA atgaggggct gatccactgg 0 0 59.71 52.77 6.94 Eufind chr6 4455 116270063 116269991 Ala GGC cttggggatt ctagatccca 0 0 53.39 44.45 8.94 Both chr6 4516 115339366 115339294 Gly TCC tttggggact ctagctccca 0 0 49.07 39.01 10.06 Both chr6 4529 115254779 115254709 Gly CCC ctatactacc ccagatgatg 0 0 69.49 51.30 18.19 Both chr6 4640 113087134 113087063 Cys ACA attttcggct gatcctctgg 0 0 49.83 41.62 8.21 Both chr6 4758 110544890 110544819 Ala TGC gcatgaacat cttccttctt 0 0 73.60 48.64 24.96 Both chr6 4839 108571677 108571605 Gly TCC tattaggact ctagatccca 0 0 46.59 31.61 14.98 Both chr6 4928 106576023 106575951 Gly CCC ttttcaggac ctagagccct 0 0 48.67 38.78 9.89 Both chr6 4936 106507965 106507894 Gly CCC aacagagact tatctcacat 0 0 42.00 31.99 10.01 Both chr6 4942 106463102 106463030 Gly CCC taaggggact ctagatccca 0 0 50.35 39.43 10.92 Both chr6 4967 106185771 106185699 Gly CCC tttggggatt ttagatccca 0 0 46.36 29.11 17.25 Both chr6 5092 103690765 103690693 Gly CCC gtatgggatt ctggatctca 0 0 30.48 23.69 6.79 Both chr6 5176 101965807 101965735 Gly TCC cactgggact ttgaaatccc 0 0 48.87 42.29 6.58 Both chr6 5187 101869409 101869336 Gly TCC tctttggact gttctacatg 0 0 36.92 27.54 9.38 Both chr6 5225 101384748 101384676 Gly TCC tcccagaact ctaagattcc 0 0 45.47 33.90 11.57 Both chr6 5333 99738607 99738535 Gly CCC cccttggact ctagacccca 0 0 56.03 51.03 5.00 Both chr6 5628 94345971 94345899 Gly CCC ttgggggact ctagatccca 0 0 40.30 29.67 10.63 Both chr6 5650 93990309 93990237 Gly CCC atgttggact caaagatccc 0 0 55.87 48.21 7.66 Both chr6 5651 93982250 93982179 Glu CTC taggaggact ctagatgcca 0 0 29.10 21.24 7.86 Both chr6 5663 93807792 93807719 Gly CCC ttggggggct tagattctaa 0 0 32.60 21.28 11.32 Both chr6 5669 93704615 93704542 Gly CCC ttctgggaac ctagaaccca 0 0 25.86 14.99 10.87 Both chr6 5792 90643387 90643316 Cys GCA atttagggct gataccctgg 0 0 60.73 43.55 17.18 Both chr6 6035 83842074 83842003 Cys ACA atgttagact gatctcctgg 0 0 50.51 39.41 11.10 Both chr6 6076 82351732 82351661 Cys GCA tctttgggct gattccctgg 0 0 41.26 35.29 5.97 Both chr6 6258 75253443 75253372 Cys GCA gcaagaggct ggtcccctgg 0 0 57.43 49.64 7.79 Eufind chr6 6259 75246057 75245985 Lys TTT acatgggaat cttactctcc 0 0 55.39 41.90 13.49 Both chr6 6283 74556514 74556442 Gly CCC cataacgatt ctagatccca 0 0 49.89 39.91 9.98 Both chr6 6317 73807910 73807839 Cys ACA taatggggct gatcccctgg 0 0 51.84 45.15 6.69 Both chr6 6361 72836747 72836675 Gly CCC atgcaggact ctagatccca 0 0 42.00 33.98 8.02 Both chr6 6446 70244846 70244774 Glu TTC aaattggatt gttccacatg 0 0 52.18 40.83 11.35 Both chr6 6448 70233922 70233851 Glu CTC ccctgggaat ctaagatctc 0 0 30.00 16.18 13.82 Both chr6 6688 62944216 62944145 Gly CCC acgtgggaat ctagattcca 0 0 60.14 40.97 19.17 Eufind chr6 6754 61649573 61649503 Gly GCC tttgaggctt ttgcactgtg 0 0 67.09 55.68 11.41 Both chr6 6766 61314596 61314525 Gly CCC taaagggact ctagatccca 0 0 59.52 49.63 9.89 Both chr6 6929 56583028 56582957 Trp CCA ctcccaggct gatcccctgg 0 0 54.85 49.53 5.32 Both chr6 6931 56485458 56485387 Trp CCA ctcccaggct gatcccctgg 0 0 54.85 49.53 5.32 Both chr6 7056 51496964 51496893 Cys GCA agttcaggct gatctcctgg 0 0 38.23 31.00 7.23 Both chr6 7216 46450097 46450025 Arg TCT atatgggact ctggatccca 0 0 54.10 46.51 7.59 Both chr6 7482 37938164 37938093 Ala CGC tatattacca ggtggttctg 0 0 74.81 51.23 23.58 Both chr6 7711 30955503 30955431 Lys CTT gtcagggact ctagatccca 0 0 63.21 46.44 16.77 Both chr6 7716 30741749 30741679 Gly TCC tccagggatt ctagatccca 0 0 37.92 31.93 5.99 Both chr6 7873 25611148 25611077 Gly CCC atgcaaaact ctagatacac 0 0 27.55 20.03 7.52 Both chr6 7896 24874097 24874026 Cys GCA gaaggaggat gatcccctgg 0 0 45.42 40.22 5.20 Both chr6 7902 24717036 24716964 Trp CCA ttaaggggct atcccctgga 0 0 56.33 45.54 10.79 Eufind chr6 7920 24235717 24235646 Cys ACA gtatttgact gatctcctgg 0 0 53.09 45.67 7.42 Both chr6 8069 19986045 19985974 Cys GCA aagaggggct gatcccctgg 0 0 60.14 51.38 8.76 Eufind chr6 8092 19189771 19189698 Trp CCA ataagggact ctcgattcta 0 0 38.18 25.72 12.46 Both chr6 8111 18835197 18835126 Sup CTA atacaattct gatcccctgg 0 0 61.73 53.02 8.71 Eufind chr6 8123 18731937 18731866 Cys GCA actcactcgc gatcccctgg 0 0 56.59 42.36 14.23 Eufind chr6 8142 18202643 18202571 Glu CTC tttggggact ctagatccca 0 0 30.80 25.47 5.33 Both chr6 8237 15774337 15774266 Phe GAA gtttcagtat gattccctgg 0 0 57.28 49.49 7.79 Eufind chr6 8501 6927944 6927873 Cys GCA tttttgggat gatcccctgg 0 0 55.83 45.37 10.46 Eufind chr6 8579 3405847 3405776 Trp CCA gacatgggct gatcccctgg 0 0 55.21 47.42 7.79 Eufind chr6 8639 144013 143941 Gly CCC gcagggaatt ctggccccac 0 0 46.44 37.64 8.80 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr7 64 1950054 1950125 Glu TTC agcaggaaat ctaagatgcc 0 0 41.15 29.38 11.77 Both chr7 107 3191636 3191708 Gln CTG aagtaagact ctaggtccca 0 0 53.87 34.59 19.28 Both chr7 193 4777378 4777450 Trp CCA gagagggatt ctagatcctg 0 0 48.60 43.01 5.59 Both chr7 229 5471932 5472004 Gly CCC tactgggact caagatccca 0 0 47.37 35.75 11.62 Both chr7 260 5876867 5876938 Glu TTC gagggggaat ttaacatccc 0 0 35.65 26.65 9.00 Both chr7 409 9046096 9046168 Gly TCC atccttggac ctagattcca 0 0 45.02 36.32 8.70 Both chr7 413 9174406 9174478 Gly TCC atccttggac ctagattcca 0 0 45.02 36.32 8.70 Both chr7 415 9193403 9193475 Gly GCC cgtcagggac ctagatccca 0 0 34.86 22.90 11.96 Both chr7 423 9385000 9385072 Gly CCC agaggggcct ctaagatttc 0 0 50.79 40.98 9.81 Both chr7 489 10157152 10157223 Glu TTC tgtcaggact ctaagatccc 0 0 51.62 35.20 16.42 Both chr7 498 10300164 10300236 Gly TCC agcatggact ctgggtcctg 0 0 59.07 46.48 12.59 Both chr7 521 10560503 10560575 Gly TCC atgggagctt ctaagattcc 0 0 58.06 51.01 7.05 Eufind chr7 570 11306272 11306343 Glu TTC agaatggaat ctaagattgc 0 0 54.63 49.54 5.09 Both chr7 596 11622476 11622548 Gly CCC aggcaagact ctagatcccg 0 0 35.41 26.72 8.69 Both chr7 660 12950963 12951035 Gly CCC ataggggact ctagacccca 0 0 44.36 39.36 5.00 Both chr7 698 13238000 13238072 Glu CTC tgttgggact ctagatcctt 0 0 33.62 28.12 5.50 Both chr7 714 13361753 13361826 Ala TGC tccagggact ctagatccca 0 0 42.53 30.36 12.17 Both chr7 723 13467401 13467474 Arg CCT ttcgaggact ctaaatctca 0 0 31.00 24.00 7.00 Both chr7 762 13855673 13855745 Gly TCC aattgaggct ctaaggtccc 0 0 42.99 36.07 6.92 Both chr7 780 14050716 14050789 Gly CCC ctctgggatt actggatccc 0 0 49.56 37.75 11.81 Both chr7 791 14141290 14141361 Glu CTC tccagggact ctagatccca 0 0 53.23 38.19 15.04 Both chr7 872 15065579 15065651 Glu TTC tgcagggaat ctaagatccc 0 0 38.58 29.06 9.52 Both chr7 881 15264275 15264347 Gly CCC tctccagact gagcctgcat 0 0 42.83 32.30 10.53 Both chr7 977 16597518 16597590 Gly CCC aatagtgact ctaaaatcac 0 0 49.57 32.52 17.05 Both chr7 980 16601574 16601646 Gly CCC tgttgggact ctatatccca 0 0 39.45 26.20 13.25 Both chr7 1011 17093780 17093852 Glu TTC tttagggaat ccaagatctc 0 0 50.44 39.24 11.20 Both chr7 1170 19179281 19179352 Gly CCC ccacaggaca ctagatacca 0 0 32.47 24.41 8.06 Both chr7 1173 19188789 19188861 Gly CCC acaggggact ctaagatccc 0 0 35.49 24.05 11.44 Both chr7 1180 19288271 19288341 Ile TAT cagggggact ctggatccca 0 0 33.97 23.31 10.66 Both chr7 1184 19308136 19308208 Met CAT aggtgggact ctagatccca 0 0 58.69 51.62 7.07 Both chr7 1222 19815991 19816063 Gly CCC atctgggact ctagatcccg 0 0 45.20 33.92 11.28 Both chr7 1231 19970280 19970352 Arg CCT cccagggact ctagatccca 0 0 59.09 46.51 12.58 Eufind chr7 1236 20148023 20148095 Glu TTC tgctgggaat ctaagatcct 0 0 46.78 37.57 9.21 Both chr7 1307 23037775 23037846 Gln TTG agggcagaat ctaagatctt 0 0 59.35 46.61 12.74 Both chr7 1845 38583758 38583830 Gly TCC ctctgagaat ctaagactcc 0 0 33.79 22.05 11.74 Both chr7 1882 39665899 39665980 Leu AAG ttcccggtac gcttgttgac 0 0 69.34 49.68 19.66 Both chr7 1884 39691465 39691536 Ala TGC gcggcgggct gaacaaacag 0 0 74.45 50.86 23.59 Both chr7 1885 39692005 39692077 Lys CTT acgttcacgt gcaggtgtat 0 0 80.47 57.81 22.66 Both chr7 1896 39947494 39947565 Gly CCC gcaggggact ctagatccca 0 0 36.77 26.77 10.00 Both chr7 1948 42028223 42028328 Leu CAA ccttcagcgt ggcgcgtttt 42028261 42028282 66.06 45.12 20.94 Both chr7 1949 42028609 42028680 Glu CTC tcttatgtgt agcacttttt 0 0 76.61 53.94 22.67 Both chr7 1959 42379038 42379110 Glu TTC atttgggaat ctaaaatctc 0 0 61.60 49.19 12.41 Eufind chr7 1970 42831094 42831167 Asn GTT ccgcaacgcc ggccttacac 0 0 82.24 58.97 23.27 Both chr7 2098 46262593 46262664 Ala AGC gcctagacct tcttcaggct 0 0 73.53 51.21 22.32 Both chr7 2170 48750970 48751042 Gly TCC ctcagggaat ctaagatgcc 0 0 57.77 45.56 12.21 Eufind chr7 2174 48833799 48833871 Gly CCC aaccaggact ctagattgca 0 0 47.87 41.39 6.48 Both chr7 2183 49004341 49004412 Glu TTC ttaagggaat ctaagatcct 0 0 55.67 40.25 15.42 Both chr7 2246 50554101 50554173 Gly CCC ctgtgggact ctagattcca 0 0 47.87 34.63 13.24 Both chr7 2266 50929599 50929671 Glu CTC ttgggggaat ctaagatccc 0 0 64.51 46.83 17.68 Both chr7 2284 51480482 51480554 Gly TCC gtctgggaat ctaagatccc 0 0 48.13 30.89 17.24 Both chr7 2298 51804212 51804284 Gly CCC cacagaaatt ctagatccca 0 0 52.61 42.86 9.75 Both chr7 2372 54455526 54455598 Gly CCC ataagggacc ctagatccca 0 0 51.16 44.59 6.57 Both chr7 2385 54858933 54859004 Cys GCA tttacaagct atccattgca 0 0 56.66 47.86 8.80 Eufind chr7 2431 56461148 56461220 Gly CCC taaagggact ctagatccca 0 0 42.22 36.91 5.31 Both chr7 2507 57934861 57934933 Arg CCT ctgagggact ctggatccca 0 0 42.76 23.30 19.46 Both chr7 2512 58111650 58111721 Gly CCC tttggggact ctaggtccca 0 0 50.64 43.41 7.23 Both chr7 2760 64831111 64831183 Trp CCA tgatgggact ctagacccca 0 0 40.44 26.65 13.79 Both chr7 2768 65123030 65123101 Tyr GTA ggatggggct gatcccctgg 0 0 42.11 30.53 11.58 Both chr7 2799 65783582 65783654 Gly CCC tggagagact ctagatccca 0 0 39.08 31.61 7.47 Both chr7 2824 66232707 66232778 Glu TTC ttgagggaat ctaagatccc 0 0 38.14 30.84 7.30 Both chr7 2827 66326975 66327047 Glu TTC tcttgggaat ctaagatctt 0 0 49.97 37.72 12.25 Both chr7 2877 68718956 68719028 Gly CCC cactgggact ctagatccca 0 0 41.06 30.47 10.59 Both chr7 2974 71496372 71496443 Trp CCA ctcggggact ttaagatccc 0 0 41.76 33.48 8.28 Both chr7 2998 71794818 71794890 Gly CCC ctttgggaat ctagatccca 0 0 55.53 37.42 18.11 Both chr7 3035 72447356 72447428 Glu CTC ctatgggatt ctagattcca 0 0 48.73 35.51 13.22 Both chr7 3036 72457931 72458003 Arg CCT gacaggaact ctaaagccca 0 0 47.02 34.69 12.33 Both chr7 3094 74918155 74918226 Glu CTC taatagatgc gcctttcttc 0 0 41.28 34.64 6.64 Both chr7 3250 81007716 81007788 Gly CCC ttggggaact ctagatcggt 0 0 54.72 38.65 16.07 Both chr7 3254 81131023 81131095 Gly CCC acataggaac ctagacacca 0 0 25.80 19.60 6.20 Both chr7 3263 81335640 81335711 Glu TTC tccagggaat ctaagatccc 0 0 45.45 38.20 7.25 Both chr7 3327 82985078 82985150 Gly TCC tttagggaat ataaagtcct 0 0 48.77 39.34 9.43 Both chr7 3347 83449769 83449841 Gly TCC cttagggaat ctaagatccc 0 0 39.71 30.28 9.43 Both chr7 3526 88915281 88915352 Cys GCA gtcttgggcc gatcccctgg 0 0 52.79 45.07 7.72 Both chr7 3532 89138129 89138200 Cys GCA tcctaggact gctcccctcg 0 0 57.28 47.88 9.40 Eufind chr7 3708 94223857 94223928 Glu TTC ttaagggaat ctaagatcct 0 0 41.51 34.61 6.90 Both chr7 3787 96236910 96236982 Arg CCT ttttgagact ccagatctta 0 0 52.23 41.63 10.60 Both chr7 3837 97751830 97751901 Cys ACA agactagact gatctcctgg 0 0 54.02 46.43 7.59 Both chr7 3959 100718197 100718268 Cys ACA accttgggct gatcccctgg 0 0 53.62 43.27 10.35 Both chr7 4200 108113772 108113843 Cys ACA ttgtagggct gatctcctgg 0 0 58.72 47.48 11.24 Both chr7 4247 109437776 109437847 Gly CCC agtcgggact cgtggtccca 0 0 27.28 16.69 10.59 Both chr7 4274 110110551 110110623 Gly CCC tttggggact tagattctat 0 0 51.95 39.45 12.50 Both chr7 4329 111952774 111952846 Gly CCC tgtagggact ttagatccca 0 0 41.35 32.30 9.05 Both chr7 4628 102989929 102989858 Glu TTC ttttagtagt ggttggttac 0 0 57.42 45.32 12.10 Eufind chr7 5157 88740306 88740233 Gly CCC tcttaggacg ctagatccca 0 0 27.49 20.12 7.37 Both chr7 5164 88599620 88599549 Gly TCC gcagagactt ctcagctctc 0 0 23.51 12.30 11.21 Both chr7 5308 84091086 84091014 Cys ACA ctatacatct atctcctgga 0 0 55.65 40.43 15.22 Eufind chr7 5356 82352663 82352592 Cys GCA ttctctggct gatctcctgg 0 0 58.72 49.96 8.76 Eufind chr7 5406 81105501 81105430 Gly CCC ttaagggact ctagatccca 0 0 50.33 43.44 6.89 Both chr7 5484 78460105 78460034 Cys ACA ataatgggct gatcccctgg 0 0 60.35 47.42 12.93 Eufind chr7 5588 75712038 75711966 Glu TTC ccaaggaaat ccaaaatcct 0 0 63.28 38.93 24.35 Both chr7 5757 70951296 70951225 Cys ACA gggagaggct gatcctctgg 0 0 61.18 46.39 14.79 Eufind chr7 5819 68170077 68170005 Gly TCC cttagggaat ctaagatccc 0 0 59.35 40.97 18.38 Eufind chr7 6002 62613839 62613767 Gly CCC gatcaaggac ctagatccca 0 0 41.00 35.25 5.75 Both chr7 6004 62589711 62589640 Trp CCA atgagagtct ttacatccca 0 0 48.19 38.90 9.29 Both chr7 6057 61303151 61303079 Trp CCA catagaggga ctagatccca 0 0 48.70 43.63 5.07 Both chr7 6103 60438286 60438214 Cys ACA tgctttgact gatcctctgg 0 0 53.78 44.39 9.39 Both chr7 6106 60404733 60404661 Gly CCC tcaagggact tgagatccca 0 0 38.77 27.87 10.90 Both chr7 6176 57889845 57889773 Gly TCC ctaagagact ctaagatctc 0 0 51.02 44.87 6.15 Both chr7 6194 57520855 57520783 Gly CCC ttccgggact ctagatccca 0 0 48.11 36.50 11.61 Both chr7 6345 52388678 52388607 Cys GCA actaggagct gatcccttag 0 0 56.99 47.47 9.52 Eufind chr7 6372 51792176 51792104 Gly CCC acagggtatt ctagatccca 0 0 34.82 20.66 14.16 Both chr7 6442 50005889 50005817 Ala TGC agtaggggct ctggatccca 0 0 43.45 35.70 7.75 Both chr7 6672 42830961 42830889 Phe GAA ttgctatcca aaagttttgg 0 0 84.19 62.58 21.61 Both chr7 6689 42398321 42398249 Glu CTC gatggggaat ctaagatccc 0 0 28.69 18.60 10.09 Both chr7 6743 40313694 40313623 Trp CCA acttggggct gatcccctgg 0 0 51.21 42.78 8.43 Both chr7 6777 39704889 39704817 Val CAC tgttgtgggc tattttactt 0 0 87.39 62.20 25.19 Both chr7 6778 39704157 39704085 Lys CTT tctacttgta atgattgatt 0 0 80.47 57.81 22.66 Both chr7 6779 39699947 39699875 Val AAC accgtcaggt acaagaatgt 0 0 86.79 61.60 25.19 Both chr7 6780 39670836 39670764 Thr TGT aatcgcagtt aattgccctt 0 0 79.46 56.92 22.54 Both chr7 6796 39001391 39001319 Lys CTT cactgggaat ctaaaagccc 0 0 61.51 45.62 15.89 Eufind chr7 6845 37833334 37833262 Arg CCT aggagggact ctagatccct 0 0 56.97 44.41 12.56 Both chr7 6879 36818345 36818274 Gly CCC tccaggaact ctggatccca 0 0 39.18 31.77 7.41 Both chr7 7421 20018430 20018359 Gly CCC tttggggact ctagatcctg 0 0 57.86 43.38 14.48 Both chr7 7455 19711152 19711079 Gly TCC tcttgggcct ctagatccca 0 0 42.08 33.72 8.36 Both chr7 7490 19119134 19119062 Gly CCC tcttaggact ctagatctca 0 0 40.66 29.25 11.41 Both chr7 7527 18535047 18534975 Gly CCC cacagggact ctagacccca 0 0 38.43 31.28 7.15 Both chr7 7541 18412057 18411984 Glu CTC cccagggact ctagatccca 0 0 33.99 25.69 8.30 Both chr7 7545 18377876 18377804 Arg CCG tctggtgact ctagatccta 0 0 57.48 39.17 18.31 Both chr7 7562 18143624 18143554 Trp CCA tgaggggact ccaaggtccc 0 0 39.24 31.31 7.93 Both chr7 7570 17995223 17995151 Gly CCC cagtggaact ctagatcctg 0 0 55.74 38.22 17.52 Both chr7 7571 17992863 17992792 Gly TCC acttactggg agggttgctt 0 0 76.83 56.40 20.43 Both chr7 7593 17887621 17887549 Gly CCC aataaagcat ctagattcca 0 0 60.53 47.99 12.54 Both chr7 7645 17351593 17351522 Trp CCA cccacctgat ctaagatgtt 0 0 43.87 32.95 10.92 Both chr7 7650 17245640 17245568 Lys TTT taaaatagga cgctgtcctc 0 0 78.41 57.09 21.32 Both chr7 7655 17213576 17213504 Glu CTC cactgggact ctagatccca 0 0 54.81 45.46 9.35 Both chr7 7708 16621688 16621616 Gly CCC acaggggact ctaagatccc 0 0 39.41 31.39 8.02 Both chr7 7710 16536641 16536569 Val CAC tttagggact ctggatccta 0 0 53.66 45.42 8.24 Both chr7 7783 15448415 15448343 Arg CCT aaatgggact ctagatccca 0 0 47.61 30.44 17.17 Both chr7 7791 15317957 15317885 Arg CCT tcaagagtgt ctagattcca 0 0 50.48 33.45 17.03 Both chr7 7801 15149938 15149866 Gly CCC ggtggggact ctagatccca 0 0 38.77 29.45 9.32 Both chr7 7828 14812194 14812122 Gly CCC catggggact ctatatctca 0 0 57.88 38.37 19.51 Both chr7 7878 14180782 14180710 Glu CTC gtaagggact ctagatctca 0 0 36.83 22.66 14.17 Both chr7 7902 13961725 13961653 Gly CCC tttggggact ctagaccccc 0 0 47.37 27.28 20.09 Both chr7 7909 13869523 13869451 Gly CCC ggaggggact ctagatccca 0 0 54.94 46.55 8.39 Both chr7 7919 13800828 13800756 Trp CCA ctgagggacc ctagatccca 0 0 40.73 28.00 12.73 Both chr7 7971 13335281 13335208 Gly CCC acaggggact ctagagccaa 0 0 25.95 14.77 11.18 Both chr7 7976 13299129 13299057 Gly TCC aaagtggaac ctagatccca 0 0 27.72 18.19 9.53 Both chr7 8002 12985494 12985422 Asp GTC aaaagggact ctaagatccc 0 0 58.06 35.59 22.47 Both chr7 8021 12839042 12838971 Glu TTC tgttgggaat ctaagatcct 0 0 48.77 39.80 8.97 Both chr7 8133 10899528 10899456 Arg CCT gaggggaact ctatatccag 0 0 48.28 33.09 15.19 Both chr7 8138 10857832 10857760 Gly CCC aactgagact ctagatccca 0 0 59.68 38.28 21.40 Both chr7 8139 10855599 10855527 Gly CCC aagaggggat ctgctgctgc 0 0 27.00 21.91 5.09 Both chr7 8144 10706427 10706355 Gly TCC cttccctgtt ctaagatcct 0 0 55.84 43.92 11.92 Both chr7 8147 10678868 10678798 Gly CCC ggggtggact ctagatccca 0 0 23.21 16.04 7.17 Both chr7 8209 10157682 10157610 Trp CCA cttcgggact ctagatcccc 0 0 42.03 33.76 8.27 Both chr7 8271 9550903 9550831 Gly TCC ctatgggaat ctaagaccct 0 0 35.97 27.09 8.88 Both chr7 8273 9549043 9548971 Gly CCC aataggaact ctagatccca 0 0 37.05 28.38 8.67 Both chr7 8290 9341356 9341284 Gly CCC tcttgagata ctagatccca 0 0 25.43 20.30 5.13 Both chr7 8291 9340662 9340588 Gly CCC gatggggact ctagatcccg 0 0 57.25 44.66 12.59 Both chr7 8317 8712558 8712487 Met CAT aaaaagtcag aagattttgt 0 0 68.98 40.96 28.02 Both chr7 8382 6987007 6986935 Arg CCT taaggggatt ctagacccta 0 0 60.76 47.73 13.03 Both chr7 8384 6963320 6963249 Glu TTC gatgcggact ctaagatccc 0 0 52.13 35.35 16.78 Both chr7 8386 6844857 6844785 Glu CTC gaggcagaat ctaagatccc 0 0 48.26 37.64 10.62 Both chr7 8514 4616637 4616563 Gly CCC agaaggaacc ccagatccca 0 0 34.03 28.95 5.08 Both chr7 8550 4160729 4160658 Trp CCA gcttgggact ctaagattgc 0 0 24.35 13.54 10.81 Both chr7 8606 2422020 2421948 Cys GCA ccctcaggct atcccctgga 0 0 28.95 21.69 7.26 Both chr7 8658 830951 830880 His ATG tacaggggct gatcccctgg 0 0 60.40 50.07 10.33 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr8 146 5174633 5174705 Arg CCT cactgcagag agagtacctg 0 0 52.14 37.10 15.04 Both chr8 152 5224152 5224224 Gly CCC gatgaggact ctagatacca 0 0 57.70 49.00 8.70 Both chr8 161 5330653 5330725 Gly CCC acaggggact tgagatccca 0 0 60.38 42.31 18.07 Both chr8 216 6485187 6485259 Glu TTC tcctgagatt ctaagatcca 0 0 39.71 30.04 9.67 Both chr8 310 8342043 8342114 Gly GCC caaaggaata gatgcccgga 0 0 45.36 36.68 8.68 Both chr8 329 8751276 8751348 Gly CCC tgggaggact ctagatccca 0 0 48.69 32.95 15.74 Both chr8 423 10307391 10307462 Glu TTC tttaaggaat ctaagattct 0 0 29.85 15.78 14.07 Both chr8 451 10820819 10820891 Gly CCC cctcgggact ctagatccca 0 0 41.11 34.53 6.58 Both chr8 496 11606049 11606121 Gly CCC tgtaggaact ctagatccca 0 0 48.95 42.69 6.26 Both chr8 499 11652484 11652555 Cys ACA cactaggact gatcctctgg 0 0 56.35 50.42 5.93 Eufind chr8 571 14044377 14044447 Cys GCA tatatgggct gatcccttgg 0 0 24.53 16.59 7.94 Both chr8 857 24987301 24987373 Gly CCC agggtatact ctaaaaaatt 0 0 50.12 42.78 7.34 Both chr8 911 26352328 26352399 Cys GCA gttcaattct gatcccctgg 0 0 56.19 46.74 9.45 Eufind chr8 932 26612068 26612140 Gly TCC atatggagac ctgggatcct 0 0 48.66 38.48 10.18 Both chr8 1043 30035980 30036052 Gly CCC ccttgggact caagaagatc 0 0 48.83 32.34 16.49 Both chr8 1103 31506575 31506646 His GTG cctgtagctt ggaggggaga 0 0 64.63 37.18 27.45 Both chr8 1108 31695308 31695380 Glu TTC ttggagtaat ctaagatccc 0 0 55.93 43.20 12.73 Both chr8 1232 36269465 36269539 Glu TTC ctcttaaagt ctagatctca 0 0 42.80 34.87 7.93 Both chr8 1367 41852184 41852256 Gly TCC aaaagggact ctaagatccc 0 0 49.76 42.19 7.57 Both chr8 1392 42791127 42791199 Gly TCC tccagggact ctaagatccc 0 0 51.58 46.37 5.21 Both chr8 1430 43986665 43986737 Glu CTC acttgggact ctagatccca 0 0 40.73 32.79 7.94 Both chr8 1476 45997658 45997729 Tyr GTA gaccagggct gatcccctgg 0 0 49.17 38.05 11.12 Both chr8 1890 60548348 60548419 Glu TTC cattgggaat ctaagatcct 0 0 53.37 42.08 11.29 Both chr8 2061 65683625 65683696 Cys GCA gggaagggct gatcccctgg 0 0 48.89 38.48 10.41 Both chr8 2068 65774922 65774994 Gly CCC ttctggggct ctagatccca 0 0 53.08 45.09 7.99 Both chr8 2075 65952249 65952321 Gly CCC actgcagatt ctatgatccc 0 0 42.95 35.34 7.61 Both chr8 2076 65956539 65956610 Gly CCC cctggggatt gtagatctca 0 0 40.54 35.49 5.05 Both chr8 2077 65960959 65961030 Sup TTA gttagggaat ctaagattcc 0 0 57.29 51.05 6.24 Eufind chr8 2087 66234745 66234817 Gly CCC tggggggact ctagatccca 0 0 39.42 29.37 10.05 Both chr8 2181 69454460 69454531 Ser ACT cagatggact gatcctctgg 0 0 52.02 44.80 7.22 Both chr8 2253 70724745 70724817 Gly CCC gaggggaact ctagatccca 0 0 46.46 37.30 9.16 Both chr8 2311 72216033 72216105 Gly TCC atttgaaaat ttaagatctc 0 0 59.76 41.96 17.80 Both chr8 2343 72890307 72890379 Trp CCA cagagggact ctagatccca 0 0 35.46 28.62 6.84 Both chr8 2358 73180692 73180764 Gly CCC ccctggggct ctagatccca 0 0 53.62 42.45 11.17 Both chr8 2505 75836991 75837072 Lys CTT acatcgattc gcctttcttc 75837028 75837037 43.82 30.84 12.98 Both chr8 2538 76469257 76469328 Glu TTC aagtggaaat ctaagaccct 0 0 44.79 38.31 6.48 Both chr8 2570 76928327 76928399 Gly CCC aacccaggct ctagatcccg 0 0 39.87 28.00 11.87 Both chr8 2605 77374493 77374564 Trp CCA cccaaagggt gatcccctgg 0 0 61.86 55.43 6.43 Eufind chr8 2698 78971824 78971895 Glu TTC aaaccagagt ctaagatcct 0 0 46.51 35.25 11.26 Both chr8 2725 79361809 79361881 Gly CCC ttttgggact ctagatctca 0 0 49.65 42.40 7.25 Both chr8 2729 79627635 79627707 Glu CTC ggacaggact caagatctca 0 0 37.00 26.68 10.32 Both chr8 2752 80040964 80041036 Gly CCC tctcaggact ctagatccca 0 0 38.90 26.44 12.46 Both chr8 2802 81506377 81506448 Cys GCA caccagggct gatcccctag 0 0 55.93 48.14 7.79 Eufind chr8 2847 82918334 82918405 Arg GCG attaagggct gatccccagg 0 0 45.78 40.02 5.76 Both chr8 3009 87142220 87142292 Lys TTT cacagggaat ctaaggtccc 0 0 48.88 35.08 13.80 Both chr8 3292 95262760 95262830 Cys ACA ggatagggct gatcctctgg 0 0 37.03 27.93 9.10 Both chr8 3425 99771786 99771857 Gly CCC tgtcaggact ctagaggcca 0 0 38.74 33.20 5.54 Both chr8 3516 102385681 102385753 Gly CCC tgaggggact ctagctccca 0 0 44.94 34.00 10.94 Both chr8 3556 103162661 103162731 Glu TTC tgtggggaat ctaagatcct 0 0 64.06 46.50 17.56 Both chr8 3573 103748990 103749062 Arg CCG ctcagggact ttagattccg 0 0 54.46 45.32 9.14 Both chr8 3641 105317123 105317195 Gly CCC cagggggact gtagatccca 0 0 51.41 40.93 10.48 Both chr8 3965 112880979 112881050 Cys GCA ctttggggct aaccccccag 0 0 54.33 47.54 6.79 Both chr8 4086 116742429 116742500 Asp GTC acgagctcac gagtgcaaaa 0 0 45.26 25.04 20.22 Both chr8 4131 116074784 116074712 Gly CCC agacggggac gatgccacat 0 0 46.24 40.41 5.83 Both chr8 4147 115616111 115616040 Arg TCG tacaggaacc ctagatctca 0 0 45.77 35.42 10.35 Both chr8 4239 112873355 112873283 Arg CCT atgtgggcct ctagatccct 0 0 30.35 20.26 10.09 Both chr8 4401 108218040 108217968 Gly CCC atgaaggatt ttagatcctg 0 0 49.22 37.84 11.38 Both chr8 4493 106369413 106369342 Cys ACA aaaacggact gatcctctag 0 0 55.18 44.27 10.91 Both chr8 4530 105391124 105391053 Cys GCA tcctagggct gatcccctgg 0 0 60.49 51.33 9.16 Both chr8 4608 103676941 103676869 Gly CCC ctctgggact ctagatccca 0 0 41.50 31.42 10.08 Both chr8 4611 103612377 103612305 Cys GCA catttctgct atcccctgga 0 0 55.73 44.90 10.83 Eufind chr8 4673 102147767 102147697 Gly CCC tttattagca ttatggtctt 0 0 53.10 47.85 5.25 Both chr8 4885 96130743 96130671 Glu CTC tcgggggact ctaagatccc 0 0 34.94 29.57 5.37 Both chr8 4932 94895802 94895730 Arg CCT ccctgggatt ctaagatccc 0 0 40.02 33.90 6.12 Both chr8 4951 94619060 94618988 Gly CCC ctctcggact ctagatccca 0 0 44.85 32.02 12.83 Both chr8 5106 89913094 89913022 Gly TCC ttgctgggct ctataacaaa 0 0 51.45 39.38 12.07 Both chr8 5241 85113353 85113281 Glu TTC acaggggaat ctaacattct 0 0 41.17 30.78 10.39 Both chr8 5271 84011943 84011872 Trp CCA gagggggact ctaagatccc 0 0 46.82 41.59 5.23 Both chr8 5349 81865699 81865627 Gly CCC gcaagggact ctagatccca 0 0 39.40 31.96 7.44 Both chr8 5376 81359615 81359544 Glu TTC tgcaaggggt cttagatccc 0 0 45.46 21.15 24.31 Both chr8 5592 77420431 77420360 Gly CCC ttgaaggact ctagattcca 0 0 55.16 50.03 5.13 Eufind chr8 5607 77117027 77116957 Sup CTA gaagggggct gatcccctgg 0 0 59.38 47.97 11.41 Eufind chr8 5627 76768799 76768727 Gly CCC aagagagact ctagatccca 0 0 49.84 35.50 14.34 Both chr8 5662 76276397 76276325 Gly CCC gggggtacct ctagatccca 0 0 46.58 35.13 11.45 Both chr8 5671 76191467 76191395 Glu CTC ctcagggatt ctagatccca 0 0 49.11 41.95 7.16 Both chr8 5774 74000027 73999955 Glu TTC ctcccagaca ctaatatcct 0 0 47.95 40.73 7.22 Both chr8 5867 72411735 72411663 Gly CCC cccagagact ctaagattcc 0 0 31.27 25.84 5.43 Both chr8 5888 72166086 72166015 Cys GCA tccagctact gatcccttgg 0 0 57.43 41.68 15.75 Both chr8 5929 71265850 71265778 Val CAC cacagggact ctagatccca 0 0 41.98 30.61 11.37 Both chr8 5934 71111307 71111236 Cys GCA atatatccta gatcccttgg 0 0 61.84 49.29 12.55 Eufind chr8 5967 70641495 70641423 Gly CCC gattgggact ctagatccaa 0 0 51.02 37.78 13.24 Both chr8 6024 69381715 69381644 Phe AAA tttcaagggc atcccctcga 0 0 26.52 18.86 7.66 Both chr8 6190 64296104 64296031 Gly CCC aaaccatatt ctagatccca 0 0 42.59 30.71 11.88 Both chr8 6219 63585071 63585001 Sup CTA ccctgggact ctggatccca 0 0 54.30 42.84 11.46 Both chr8 6267 62076412 62076342 Gly CCC tcagtggctt ttggatccca 0 0 44.45 37.51 6.94 Both chr8 6272 62038399 62038328 Glu TTC attagggaat ctaagattcc 0 0 44.27 32.54 11.73 Both chr8 6288 61207126 61207054 Gly CCC gaatgggact ctagatccca 0 0 53.83 46.63 7.20 Both chr8 6333 59702652 59702581 Cys GCA agaatgggct gatctcctgc 0 0 55.01 48.47 6.54 Eufind chr8 6953 40285746 40285675 Glu TTC aggctggaat caaagatcct 0 0 55.73 45.24 10.49 Eufind chr8 6961 39806603 39806532 Cys GCA aactatagct gatcccctgg 0 0 59.11 51.32 7.79 Eufind chr8 7141 31719512 31719439 Gly CCC gttagggact tcggatccca 0 0 35.98 28.48 7.50 Both chr8 7554 17730050 17729979 Cys GCA ataaagagct gatccgctgg 0 0 56.27 50.10 6.17 Eufind chr8 7575 17392017 17391945 Ser GGA gtcactggct atcccctgga 0 0 54.43 43.54 10.89 Both chr8 7653 14971033 14970962 Phe GAA acaggaagct gatccccgga 0 0 52.10 39.28 12.82 Both chr8 7731 12407324 12407253 Cys ACA cataagggct ggaaatggca 0 0 56.11 48.32 7.79 Eufind chr8 7765 11441086 11441014 Gly TCC tccggggaat caaggatccc 0 0 37.60 30.51 7.09 Both chr8 7862 10147526 10147454 Gly TCC actggagact ctagatccca 0 0 42.63 34.18 8.45 Both chr8 7878 9997161 9997089 Arg CCT tctatggact ctagatccca 0 0 37.54 28.67 8.87 Both chr8 7940 8622712 8622640 Gly CCC tgggaggact ctagatccca 0 0 48.69 32.95 15.74 Both chr8 7981 7964835 7964755 Thr CGT tgttgggacc ctaggggtgt 7964798 7964790 28.96 22.41 6.55 Both chr8 8010 7328554 7328483 Cys GCA aagaagggct gaactgctgg 0 0 57.85 46.60 11.25 Eufind chr8 8123 4372578 4372489 Tyr GTA gagagcactt agagttaatg 4372541 4372525 48.39 33.72 14.67 Both chr8 8149 3683348 3683276 Glu CTC aacacagcac ctagatctca 0 0 34.97 27.44 7.53 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr9 76 5362565 5362637 Glu TTC ttgaaggaat ctaagatccc 0 0 54.34 42.18 12.16 Both chr9 80 5522597 5522668 Cys GCA ggtttaaccc gatctcctga 0 0 38.41 31.62 6.79 Both chr9 122 7313852 7313924 Gly TCC actatagatc ctaagactgc 0 0 47.36 32.27 15.09 Both chr9 277 12590577 12590649 Arg TCT tactgggaat ctaagatctg 0 0 55.39 39.30 16.09 Both chr9 376 14924258 14924330 Gly TCC gtaagggact ctagatccca 0 0 23.75 18.48 5.27 Both chr9 449 17132348 17132419 Ala TGC tatagaaata tctgtccttt 0 0 68.22 48.38 19.84 Both chr9 506 18640518 18640590 Arg CCT cctctggact ctagatccca 0 0 59.05 50.80 8.25 Both chr9 571 20120981 20121053 Gly TCC tttggggact ttaagagctt 0 0 49.34 43.23 6.11 Both chr9 618 21517574 21517646 Gly CCC cactgggact atagatccca 0 0 38.46 31.39 7.07 Both chr9 674 23279774 23279846 Val TAC gaaagggaca ctaagacccc 0 0 52.41 30.64 21.77 Both chr9 678 23450405 23450476 Cys ACA agataggact gatcccctgg 0 0 49.90 43.07 6.83 Both chr9 745 25147292 25147364 Gly CCC gttccagact ctagatccca 0 0 48.65 33.67 14.98 Both chr9 762 25684269 25684341 Arg TCT ccctaggatc tgagactcca 0 0 38.91 30.98 7.93 Both chr9 799 26564227 26564298 Glu TTC caactcaagt atatgcgttt 0 0 76.25 53.58 22.67 Both chr9 936 29785021 29785093 Arg CCT gactgggact ctagatcctg 0 0 26.99 17.21 9.78 Both chr9 1086 34406821 34406893 Val CAC tatgggcctt gactttcaga 0 0 65.66 57.73 7.93 Both chr9 1145 36215479 36215551 Ser GGA gacttgggct atcccctgga 0 0 57.98 47.14 10.84 Eufind chr9 1178 36950579 36950651 Gly CCC tgtgaggact ctagatccca 0 0 37.40 27.97 9.43 Both chr9 1409 43673355 43673427 Gly CCC tttaaggact ctagatcccc 0 0 48.38 33.05 15.33 Both chr9 1416 43883890 43883971 Leu CAA tgccactgga tctctgttca 0 0 62.21 45.97 16.24 Eufind chr9 1429 44455627 44455699 Lys CTT gtttgggact ctagatacca 0 0 61.22 43.71 17.51 Both chr9 1445 44687629 44687700 Ala CGC agtagggact taggtccaac 0 0 50.24 33.18 17.06 Both chr9 1459 44964995 44965066 Glu TTC cagaaggaat ctaagatact 0 0 47.79 40.84 6.95 Both chr9 1470 45285095 45285166 Glu TTC gtttgggaat ctaagaagat 0 0 49.07 39.91 9.16 Both chr9 1506 46412773 46412845 Gly CCC aagtgggact ctagatccca 0 0 50.35 39.43 10.92 Both chr9 1561 48484238 48484309 Glu TTC tttaatttgg ctaagaatac 0 0 38.78 23.82 14.96 Both chr9 1675 52124825 52124899 Gly CCC ttgtgggact ctagacccca 0 0 27.03 19.82 7.21 Both chr9 1681 52260909 52260980 Tyr ATA atataggact gatctcctgc 0 0 44.35 29.49 14.86 Both chr9 1721 53205039 53205110 Cys GCA caaatgggct gatcccctgg 0 0 41.75 36.02 5.73 Both chr9 1800 55747909 55747981 Gly TCC cccaaggaat ttaatatcct 0 0 56.10 40.13 15.97 Both chr9 1998 63275689 63275761 Gly CCC gggagggact ctagatcctg 0 0 48.51 38.52 9.99 Both chr9 2005 63329651 63329723 Gly CCC aggggggact ctcgatccca 0 0 49.65 36.95 12.70 Both chr9 2040 63961107 63961179 Glu TTC gactgggact ctaagatttc 0 0 63.84 50.85 12.99 Both chr9 2219 68857649 68857720 Tyr ATA atctttgact gatcctctgg 0 0 59.95 52.55 7.40 Eufind chr9 2303 71290650 71290721 Glu TTC aatagggaat ttaggatcat 0 0 58.44 40.07 18.37 Both chr9 2371 73147144 73147216 Gly CCC gtatgggatt ctggatctca 0 0 30.48 23.69 6.79 Both chr9 2744 82796427 82796498 Cys GCA acatatggct gatcccctag 0 0 56.32 48.91 7.41 Both chr9 2830 84404212 84404294 Leu TAA cgagtgagac gttacgtttt 0 0 81.03 49.45 31.58 Both chr9 2965 87613626 87613697 Cys GCA tggaggtgct gatcctctgg 0 0 48.47 38.96 9.51 Both chr9 3058 89442895 89442966 Cys GCA tttaggggct gatcccctgg 0 0 52.86 47.30 5.56 Both chr9 3118 90597498 90597570 Gly ACC gcttgggact ctagatccca 0 0 33.61 19.18 14.43 Both chr9 3200 92473950 92474022 Gly CCC tccaggagct ctagatccta 0 0 49.46 34.55 14.91 Both chr9 3282 93795788 93795859 Cys ACA ctcattgact gatcccctag 0 0 44.96 39.69 5.27 Both chr9 3449 97456745 97456816 Cys ACA ttttgtgaac gatctcctgg 0 0 55.55 48.96 6.59 Eufind chr9 3459 97753440 97753512 Arg CCT ctttgagact ctagatccca 0 0 34.18 16.18 18.00 Both chr9 3559 99604047 99604119 Val CAC tagggggacc ctagatccct 0 0 45.77 35.04 10.73 Both chr9 3675 101384644 101384715 Cys ACA tacatggact gatctcctgg 0 0 36.74 31.28 5.46 Both chr9 3778 103658028 103658099 Cys GCA acatatggct gatccctgga 0 0 61.70 52.94 8.76 Eufind chr9 3781 103895823 103895895 Glu CTC ttgaggggct ctaagatccc 0 0 46.89 32.99 13.90 Both chr9 3833 105017037 105017109 Gly CCC gtgagggact ctagatccca 0 0 56.58 48.21 8.37 Both chr9 3835 105129960 105130034 Gly CCC tggagggact caaaacccca 0 0 38.12 31.97 6.15 Both chr9 3840 105164851 105164922 Cys GCA cacagggact ctaagacccc 0 0 56.15 44.73 11.42 Both chr9 4189 100778605 100778534 Gly TCC tcgagggact ctagatccca 0 0 64.88 49.79 15.09 Both chr9 4400 96692637 96692566 Cys GCA tcctggggct gatcccctgg 0 0 45.97 35.81 10.16 Both chr9 4482 94902874 94902802 Gln TTG tgaagggaat ttaaaatccc 0 0 47.16 33.96 13.20 Both chr9 4535 93603111 93603040 Cys ACA ctcttggcct gatcctctgg 0 0 56.68 49.28 7.40 Eufind chr9 4959 84535491 84535419 Glu CTC cagtgagact ctagatcctg 0 0 41.94 28.04 13.90 Both chr9 4962 84508227 84508156 Gly CCC gcttgggact ctagatccca 0 0 50.45 38.48 11.97 Both chr9 4969 84456389 84456316 Gly TCC accagggact ctagattcca 0 0 47.63 40.72 6.91 Both chr9 4985 84155176 84155104 Gly CCC ggaagggact ctacatccca 0 0 35.81 28.88 6.93 Both chr9 4994 83981312 83981240 Arg TCT ttccaggact ctaagatccc 0 0 51.53 42.66 8.87 Both chr9 5015 83718951 83718880 Cys GCA taaacgggct gatcccctgg 0 0 48.62 43.06 5.56 Both chr9 5041 83202805 83202733 Sup CTA tttagggact ctagatccca 0 0 43.01 35.82 7.19 Both chr9 5138 79832294 79832222 Cys GCA ctccttggct gtcccctgga 0 0 58.44 44.46 13.98 Eufind chr9 5215 78013492 78013421 Cys GCA acattcagct gattccctag 0 0 52.08 40.63 11.45 Both chr9 5241 77589977 77589905 Cys GCA gaatttggct atccgctgga 0 0 55.14 45.07 10.07 Eufind chr9 5247 77424050 77423978 Gly CCC atgagggatt ctagatctca 0 0 39.73 33.40 6.33 Both chr9 5280 76792974 76792902 Gly CCC tttgtggact ctagagccca 0 0 58.53 41.93 16.60 Eufind chr9 5294 76358111 76358040 Glu TTC ttgaggtaat ataagatcct 0 0 38.40 33.02 5.38 Both chr9 5312 75864220 75864148 Gly CCC gaccgggagt atagatccca 0 0 45.16 27.58 17.58 Both chr9 5331 75486408 75486336 Glu CTC aatagggaat ctaaggatcc 0 0 53.22 43.45 9.77 Both chr9 5378 74204697 74204625 Gly CCC tttcaagact ctagatccca 0 0 49.58 38.24 11.34 Both chr9 5442 72503102 72503031 Glu TTC aagaaggaat actaagatcc 0 0 32.10 26.75 5.35 Both chr9 5533 70389668 70389597 Cys GCA tttggtgact gatcccctgg 0 0 62.77 50.52 12.25 Eufind chr9 5545 70086725 70086653 Gly TCC gtgggtaact ctaagacccc 0 0 33.05 23.60 9.45 Both chr9 5554 69927898 69927827 Lys TTT catgtccagt ctaagatttg 0 0 47.08 35.84 11.24 Both chr9 5619 68221416 68221345 Cys GCA aagctcatgg gatcccctgg 0 0 35.45 24.65 10.80 Both chr9 5629 67789528 67789457 Cys GCA atttggggct gatcccctgg 0 0 55.16 46.69 8.47 Eufind chr9 5686 66029548 66029476 Gly CCC agggaagact ctggatccca 0 0 51.80 41.66 10.14 Both chr9 5689 65942917 65942845 Gly CCC tggggagact ctagatccca 0 0 37.97 30.66 7.31 Both chr9 5692 65893767 65893695 Gly CCC tggggagact ctagatccca 0 0 37.97 30.66 7.31 Both chr9 5793 63559635 63559565 Cys GCA aagggggact ctaagatcct 0 0 42.59 36.19 6.40 Both chr9 5798 63465467 63465397 Lys TTT gcttgtggat cccacaagcc 0 0 43.93 33.46 10.47 Both chr9 5819 63197449 63197378 Glu TTC aggaggcaat ctaagatcag 0 0 53.59 40.34 13.25 Both chr9 6012 55524569 55524498 Cys GCA cttctgtttc gatcccctgg 0 0 57.74 48.98 8.76 Eufind chr9 6059 54029189 54029118 Ser GGA ttatggagct gatcccctgg 0 0 60.26 49.00 11.26 Both chr9 6139 51558554 51558483 Cys GCA gacttgcact ggtccgctgg 0 0 56.16 48.88 7.28 Eufind chr9 6228 48410609 48410537 Met CAT tatttggtct gatcattctt 0 0 57.87 42.76 15.11 Both chr9 6332 44829409 44829338 Glu TTC cagaaggaat ctaagatact 0 0 47.79 40.84 6.95 Both chr9 6372 43774659 43774588 Glu TTC tggagggaga ctgagattgt 0 0 61.78 47.84 13.94 Both chr9 6446 41991558 41991486 Gly CCC tcctgggact ctaaatccca 0 0 40.12 34.23 5.89 Both chr9 6648 36096990 36096918 Gly CCC agtaaagact ctagatccca 0 0 34.95 29.49 5.46 Both chr9 6653 35959930 35959858 Gly TCC tatggggacc ctcagatctt 0 0 51.08 38.15 12.93 Both chr9 6677 35166737 35166665 Gly CCC tagcaagact ttagatccca 0 0 41.24 28.58 12.66 Both chr9 6679 35106489 35106417 Glu CTC gatggggaat ccaatatccc 0 0 45.29 35.67 9.62 Both chr9 6692 34947196 34947125 Glu CTC ttaagggact ctaaatttca 0 0 51.54 36.33 15.21 Both chr9 6760 33216141 33216068 Lys TTT catagggaat ctaagatctc 0 0 58.66 45.78 12.88 Eufind chr9 6947 26945382 26945311 Cys GCA agccatcgtt gatttcctgg 0 0 58.08 49.67 8.41 Both chr9 7011 25192943 25192871 Gly CCC tactgggact ctggatccca 0 0 40.39 32.02 8.37 Both chr9 7218 20109039 20108968 Cys GCA aaattggact gatcccctgg 0 0 55.83 49.25 6.58 Eufind chr9 7226 19865739 19865667 Glu TTC tcaggggact ctaagattcc 0 0 37.52 23.45 14.07 Both chr9 7253 19286229 19286158 Sup CTA tgtggggact ctagatctca 0 0 42.09 29.63 12.46 Both chr9 7392 14803269 14803197 Gly CCC taacaagact ctagatccca 0 0 40.20 30.09 10.11 Both chr9 7559 9924878 9924806 Trp CCA cttattcgtt tttgggcttc 0 0 30.36 24.57 5.79 Both   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr10 12 170386 170458 Lys TTT ccctgggaat gtaagatccc 0 0 36.36 25.20 11.16 Both chr10 23 536758 536829 Lys CTT tagaagggct ctagatcaca 0 0 42.76 27.12 15.64 Both chr10 195 5993005 5993077 Glu CTC agtggatact ctggggatgc 0 0 51.41 37.06 14.35 Both chr10 227 6490906 6490978 Gly GCC gtttgagact ctagagcctg 0 0 47.55 36.01 11.54 Both chr10 327 8464872 8464944 Gly TCC gcatgggact ctaagattcc 0 0 39.50 31.60 7.90 Both chr10 404 9940763 9940834 Cys GCA tttaggggct gatcccctgg 0 0 59.55 46.03 13.52 Both chr10 486 12023653 12023725 Gly CCC aagagggact ctagatccca 0 0 62.55 49.87 12.68 Both chr10 527 12640119 12640191 Gly CCC ttgggggact ctagatccca 0 0 47.63 33.07 14.56 Both chr10 580 13442983 13443054 Ser GGA tatgtgggct gatcccctgg 0 0 59.66 51.87 7.79 Eufind chr10 663 15325917 15325990 Gly CCC tatagggact ctagatccca 0 0 52.22 37.91 14.31 Both chr10 693 16145820 16145892 Gly CCC aaaggggact cgaaatcccg 0 0 40.94 32.98 7.96 Both chr10 708 16627381 16627453 Gly CCC gcactggact ctagatccca 0 0 39.22 31.08 8.14 Both chr10 715 16979762 16979834 Gly CCC ctgagggagt ctatatccca 0 0 38.99 33.70 5.29 Both chr10 770 18333532 18333603 Asp GTC cctcctgccg gcaacacacc 0 0 57.66 40.96 16.70 Eufind chr10 860 19964000 19964071 Gly CCC ctgttgggac ctagatccca 0 0 47.45 41.14 6.31 Both chr10 865 20039325 20039397 Gly ACC acctggggct ctagatccca 0 0 30.58 20.75 9.83 Both chr10 882 20415195 20415267 Trp CCA agttgggact ttaggacccc 0 0 50.49 42.14 8.35 Both chr10 889 20688414 20688486 Gly CCC caaggggact ctagatccca 0 0 50.35 39.43 10.92 Both chr10 1002 22844952 22845023 Cys GCA gttgaagttt gatcccctgg 0 0 51.54 42.44 9.10 Both chr10 1093 25839548 25839629 Leu TAG atgtgagtac aggttttgtt 0 0 74.02 52.79 21.23 Both chr10 1094 25841215 25841296 Leu AAG ttcagcatct gggaaagttt 0 0 69.84 50.16 19.68 Both chr10 1095 25844468 25844557 Tyr GTA ccatgtgcac agtgccgcac 25844505 25844521 71.72 45.31 26.41 Both chr10 1096 25845137 25845226 Tyr GTA agatgtgcac agtgccttag 25845174 25845190 72.64 43.91 28.73 Both chr10 1097 25847905 25847995 Tyr GTA agtcgtgcac agtgcttggg 25847942 25847959 77.87 51.46 26.41 Both chr10 1098 25849753 25849842 Tyr GTA gcgtgcgcgc agtgcagctg 25849790 25849806 75.48 49.07 26.41 Both chr10 1099 25870573 25870645 Thr TGT gttgcgcttt agagagagta 0 0 79.46 56.92 22.54 Both chr10 1101 25884134 25884206 Thr TGT tacacgcgag atgagtcgct 0 0 79.46 56.92 22.54 Both chr10 1102 25884544 25884615 Pro AGG attttatcgt gtctttgttt 0 0 75.92 53.85 22.07 Both chr10 1103 25887284 25887355 Pro AGG taaatcgtgt tactttttcc 0 0 75.92 53.85 22.07 Both chr10 1266 31001393 31001464 Ser AGA tatatgggct gatcccctgg 0 0 62.08 55.16 6.92 Eufind chr10 1303 32506233 32506304 Trp CCA actagggact ctaagctccc 0 0 32.20 27.02 5.18 Both chr10 1370 34963449 34963521 Glu CTC ttctgggact ctaaatccca 0 0 31.81 22.60 9.21 Both chr10 1453 36753467 36753539 Gly CCC gctagggact ctagctccca 0 0 36.48 19.35 17.13 Both chr10 1627 42860787 42860859 Gly CCC attggagact ctagacccct 0 0 39.20 33.29 5.91 Both chr10 1631 43007612 43007683 Cys ACA gctctcaact gatctcctgg 0 0 55.12 49.52 5.60 Both chr10 1670 44047213 44047285 Gly CCC ttacaggact ccagatcaca 0 0 45.80 35.98 9.82 Both chr10 1756 46210482 46210554 Gly CCC acaggggact ctagatctcg 0 0 36.75 30.60 6.15 Both chr10 1783 46841390 46841462 Gly TCC taattgggat ctaagatccc 0 0 44.62 34.93 9.69 Both chr10 1811 47160832 47160904 Gly CCC gggggggact atagatccta 0 0 51.03 41.61 9.42 Both chr10 1815 47203318 47203390 Gly CCC ggagggggtt ctacatcctt 0 0 38.13 30.75 7.38 Both chr10 1820 47286676 47286748 Gly CCC ttcataggat ctagatccca 0 0 49.00 43.74 5.26 Both chr10 1828 47448015 47448087 Gly CCC tgtggggact ctagatccca 0 0 50.39 40.72 9.67 Both chr10 1839 47703208 47703280 Arg CCT tcttgggact taggtcccac 0 0 29.95 21.40 8.55 Both chr10 1889 48404481 48404553 Gly CCC accttgaact ctagattctg 0 0 40.71 26.93 13.78 Both chr10 2102 53513828 53513899 Gly CCC tgaggggatt ctagatccca 0 0 39.02 28.45 10.57 Both chr10 2247 58962949 58963021 Glu CTC aggagggact ccagatccca 0 0 42.55 34.44 8.11 Both chr10 2271 60006846 60006917 Sup TTA tcttgggaat ctaagatcct 0 0 46.41 32.62 13.79 Both chr10 2291 60521779 60521850 Glu TTC tcttggaaat ctaagacgct 0 0 47.32 31.51 15.81 Both chr10 2338 61688442 61688513 Arg GCG taagtgggct gatcccctgg 0 0 52.87 42.30 10.57 Both chr10 2433 64353999 64354070 His ATG ttccctgact gatcccctgg 0 0 55.70 50.34 5.36 Both chr10 2504 66856406 66856477 His GTG ccagtagctc ttgcgaaagc 0 0 64.63 37.18 27.45 Both chr10 2505 66857938 66858009 His GTG ccggtagctc ttgtggcaac 0 0 64.63 37.18 27.45 Both chr10 2630 69685359 69685431 Glu TTC catggggaat ataagatccc 0 0 57.77 47.03 10.74 Eufind chr10 2631 69698192 69698273 Ser GCT atcctattgg gcctgtggct 0 0 81.72 54.14 27.58 Both chr10 2696 71236614 71236686 Gly CCC ggaagggact ttacatccca 0 0 52.89 42.38 10.51 Both chr10 2717 71777075 71777146 Cys ACA tctaaggact ggtcctctgg 0 0 57.75 50.20 7.55 Eufind chr10 2739 72395361 72395433 Gly CCC tctgtaggct ctagattcca 0 0 46.95 34.59 12.36 Both chr10 2890 76749172 76749243 Cys GCA atcttgggct gatcccctgg 0 0 55.31 48.78 6.53 Eufind chr10 2984 79061209 79061281 Gly CCC actggggcct ctagatccca 0 0 38.78 29.08 9.70 Both chr10 2997 79364467 79364539 Gly CCC taaagggact ctggattcca 0 0 62.46 42.41 20.05 Both chr10 2999 79433984 79434056 Gly CCC tgtcagggat ctagatccca 0 0 42.68 36.08 6.60 Both chr10 3020 79936129 79936200 Cys GCA aactgtagct gatcccctgg 0 0 58.42 49.66 8.76 Eufind chr10 3035 80367271 80367343 Arg CCT gaaagggact ctagctctca 0 0 55.33 41.48 13.85 Both chr10 3100 82035832 82035904 Lys CTT attaaggaat ctattattaa 0 0 48.01 39.79 8.22 Both chr10 3103 82119455 82119526 Cys GCA atcaggagat gatcccttgg 0 0 58.22 52.27 5.95 Eufind chr10 3137 82857477 82857549 Gly TCC tcaagggacg ctaagatccc 0 0 26.19 17.08 9.11 Both chr10 3143 83036746 83036818 Gly CCC ttacaggacg ctagatccca 0 0 43.25 33.10 10.15 Both chr10 3222 84665468 84665540 Leu CAA tatggggact ctagatcccg 0 0 53.83 38.13 15.70 Both chr10 3242 85645621 85645692 Glu TTC atgggagaat ctaaaatcca 0 0 53.55 47.01 6.54 Both chr10 3272 86395940 86396011 Glu TTC tctcaggaat ctgagatccc 0 0 62.18 48.92 13.26 Both chr10 3359 88076579 88076651 Gly CCC gccagagatt ctagatccca 0 0 46.78 33.02 13.76 Both chr10 3372 88241020 88241092 Glu CTC aaccaggact ccagatccca 0 0 45.23 36.36 8.87 Both chr10 3374 88280785 88280857 Glu CTC tccctggtga ctaagatcct 0 0 44.14 35.10 9.04 Both chr10 3444 89757044 89757116 Trp CCA gtggaggact ctagacacca 0 0 49.55 37.72 11.83 Both chr10 3501 90565764 90565836 Gly CCC atcgggggct ctagatccca 0 0 32.56 25.29 7.27 Both chr10 3504 90622571 90622642 Cys GCA tatatggggt gatcccctgg 0 0 59.46 51.67 7.79 Eufind chr10 3535 91250286 91250358 Gly CCC ttctgggact ctagacccca 0 0 38.35 32.88 5.47 Both chr10 3684 94326174 94326245 Cys GCA ctaaagaaaa gaacccctgg 0 0 61.20 52.44 8.76 Eufind chr10 3813 97744140 97744211 Gly CCC ggaagagact ctggatccca 0 0 37.14 30.90 6.24 Both chr10 3893 100696405 100696476 Cys ACA gggattgact gatcctctgg 0 0 56.28 49.36 6.92 Eufind chr10 3988 103228335 103228407 Gly TCC aacagggact ctaaggcccc 0 0 47.77 27.63 20.14 Both chr10 3995 103311664 103311736 Gly TCC aacagggact ctaaggcccc 0 0 47.77 27.63 20.14 Both chr10 4059 104386481 104386552 Cys GCA acgtggtggc gatcccctgg 0 0 45.39 31.56 13.83 Both chr10 4062 104406834 104406905 Cys GCA gtgggggact gattggaaaa 0 0 55.65 45.25 10.40 Eufind chr10 4381 100264162 100264090 Glu TTC tacagggaat ctaagttccc 0 0 41.01 33.05 7.96 Both chr10 4440 98542679 98542607 Gly TCC cagggggact aaaggttctt 0 0 43.39 37.06 6.33 Both chr10 4514 95902678 95902606 Lys CTT atgcttgact gttgctcttc 0 0 62.92 43.43 19.49 Both chr10 4528 95699340 95699268 Lys TTT gccttcagga ggaggtttac 0 0 67.23 48.25 18.98 Both chr10 4547 95422937 95422865 Gly CCC gaacagaact ctggatcccg 0 0 32.93 27.93 5.00 Both chr10 4579 94464519 94464449 Glu TTC ttcaggggat ctaagatccg 0 0 43.83 24.95 18.88 Both chr10 4751 90686035 90685964 Glu TTC aggaggggat cggagatccc 0 0 49.09 35.80 13.29 Both chr10 4968 86620416 86620344 Gly TCC tcttgggact ctaagagtcc 0 0 52.01 41.29 10.72 Both chr10 5216 80286134 80286062 Gly CCC agcagggact ctagatccca 0 0 29.68 24.68 5.00 Both chr10 5275 79051474 79051402 Gly CCC ctgagggtct ctagatccca 0 0 41.73 28.01 13.72 Both chr10 5292 78806218 78806146 Gly CCC gctgggggct ccagatccca 0 0 46.89 31.20 15.69 Both chr10 5381 76065348 76065277 Cys GCA tcttcagcag gatcccctgg 0 0 51.42 42.95 8.47 Both chr10 5398 75509031 75508959 Gly CCC atatgagaat ctagatctgc 0 0 35.34 23.73 11.61 Both chr10 5399 75496289 75496217 Gly CCC ttccaggacc ctagatccca 0 0 41.90 33.99 7.91 Both chr10 5438 74489000 74488929 Glu TTC tttcgggagt ctaagatcct 0 0 56.12 40.24 15.88 Eufind chr10 5443 74387554 74387483 Gln TTG atttagaagt ctgaaatctt 0 0 55.87 45.58 10.29 Both chr10 5511 72540246 72540174 Lys CTT tcacccaggt catgtagtat 0 0 80.72 58.28 22.44 Both chr10 5520 72442436 72442364 Gly CCC acagggggct ctagatcctg 0 0 46.87 38.62 8.25 Both chr10 5594 70441808 70441737 Cys ACA taggaagact gatctcctgg 0 0 56.29 49.93 6.36 Both chr10 5602 70128531 70128459 Ile TAT tatatgactt aggcagagtg 0 0 63.95 45.55 18.40 Eufind chr10 5630 69438652 69438580 Gly CCC caaggggact atacatccct 0 0 29.43 20.85 8.58 Both chr10 5657 68939073 68939001 Glu TTC ctttgggaat ctaagatccc 0 0 44.72 34.39 10.33 Both chr10 5676 68306881 68306811 Cys GCA attatggtcc gatctcttag 0 0 62.76 49.22 13.54 Both chr10 5734 66855742 66855671 His GTG ccagtagctc ttgtggcaac 0 0 64.63 37.18 27.45 Both chr10 5777 65681389 65681318 Cys GCA acttaggact atctgctgga 0 0 52.11 40.85 11.26 Both chr10 5923 61195132 61195060 Gly CCC gcccagagac ctagaaccca 0 0 41.67 34.19 7.48 Both chr10 5961 59989929 59989858 Cys GCA actttgggct gatcccctgg 0 0 57.25 48.54 8.71 Eufind chr10 5965 59784280 59784209 Glu TTC tgtggggaat ataagatctt 0 0 25.91 13.12 12.79 Both chr10 6004 58797434 58797363 Cys GCA ggagtaagct gatcccctgg 0 0 61.24 47.90 13.34 Both chr10 6109 55199481 55199410 SeC TCA tgccggggct gatcccttgg 0 0 60.12 0.00 0.00 Eufind chr10 6187 52710793 52710722 Asp GTC ctcttggagt gaaattgcgc 0 0 41.50 31.12 10.38 Both chr10 6198 52441007 52440936 Glu TTC tacacagagt ctgagatcct 0 0 58.28 52.59 5.69 Eufind chr10 6217 51975579 51975508 Glu TTC aatagggaat ctaagatcct 0 0 43.05 36.76 6.29 Both chr10 6253 51344828 51344757 Glu TTC agagggatct ctagatcaca 0 0 35.66 26.04 9.62 Both chr10 6275 50950324 50950252 Glu TTC aatggggaat ctaagatccc 0 0 37.76 32.71 5.05 Both chr10 6374 48693756 48693684 Gly CCC tcttaggact ctagattcca 0 0 45.19 37.19 8.00 Both chr10 6392 48334966 48334894 Gly CCC tatacggact ctagatccta 0 0 54.56 39.32 15.24 Both chr10 6423 47764839 47764767 Gly CCC ctctgggact ctggtcccac 0 0 53.42 45.20 8.22 Both chr10 6424 47739109 47739038 Glu CTC gtttggggat ctagatctgc 0 0 57.05 41.87 15.18 Both chr10 6462 47089376 47089304 Gly TCC caatggggat ctaagatcct 0 0 39.54 33.57 5.97 Both chr10 6492 46532454 46532382 Glu CTC atctgagaat ttaaaatccc 0 0 55.98 48.54 7.44 Eufind chr10 6506 46370864 46370792 Gly CCC acgggggact ctagattcca 0 0 46.09 35.54 10.55 Both chr10 6589 44838243 44838171 Gly CCC tcttgggact ctaagatccc 0 0 46.12 36.26 9.86 Both chr10 6594 44695985 44695913 Gly CCC tcttgggact ctaagatccc 0 0 46.12 36.26 9.86 Both chr10 6847 36808300 36808228 Gly CCC aagagggact ctagacccca 0 0 45.91 37.95 7.96 Both chr10 6857 36640116 36640045 Glu TTC atgagggaat ctcagatttc 0 0 50.00 42.51 7.49 Both chr10 6878 36090364 36090283 Ser GCT aggtttctgg aacgtaggtt 0 0 85.34 57.77 27.57 Both chr10 6895 35718235 35718163 Gly CCC tggagggatt ctagattcca 0 0 48.98 37.85 11.13 Both chr10 6911 35329471 35329400 Cys GCA tattagggct gatctactgg 0 0 59.21 53.99 5.22 Eufind chr10 6934 34223146 34223074 Gly CCC aacagggact ctggatccca 0 0 37.29 32.02 5.27 Both chr10 7013 31363777 31363705 Cys GCA ctgttaggtc atctgctgaa 0 0 57.64 43.71 13.93 Eufind chr10 7109 28297900 28297828 Gly CCC tacaggggtt ctagatccta 0 0 48.88 38.91 9.97 Both chr10 7198 25895952 25895871 Leu AAG tgtcccacgg agtgttcctt 0 0 55.18 44.37 10.81 Eufind chr10 7199 25886390 25886309 Leu AAG gccctcagtc agtggttttt 0 0 69.84 50.16 19.68 Both chr10 7200 25874307 25874226 Leu TAG cgccacctgt atggtgtgtt 0 0 68.82 48.37 20.45 Both chr10 7201 25869025 25868954 Pro TGG ctcagagctt aggtgctcgg 0 0 79.61 57.55 22.06 Both chr10 7202 25818739 25818667 Thr TGT tcacttgcaa actgggcaat 0 0 78.79 56.36 22.43 Both chr10 7203 25817095 25817006 Tyr GTA gttcgtgctt agaaacgagt 25817058 25817042 75.19 48.78 26.41 Both chr10 7204 25815869 25815798 Pro TGG cttttactgt aattcctttt 0 0 76.15 54.09 22.06 Both chr10 7307 22206885 22206813 Arg ACG agtcgtctcg gtgggacgcg 0 0 72.37 52.49 19.88 Both chr10 7319 22069034 22068963 Glu TTC cctagggaat ataatatccc 0 0 48.74 42.63 6.11 Both chr10 7377 20741860 20741788 Gly TCC cattgggact ctagatcctg 0 0 42.34 25.47 16.87 Both chr10 7456 18605141 18605069 Gly CCC caaattattt ctagatccta 0 0 50.03 34.92 15.11 Both chr10 7600 14953276 14953204 Arg CCG cagggggcct ctagttcgca 0 0 50.75 32.28 18.47 Both chr10 7603 14914861 14914790 Cys GCA ttatcgggat gatcctctgg 0 0 57.24 48.48 8.76 Eufind chr10 7624 14471041 14470969 Gly CCC cacaggggct ctagatccca 0 0 43.93 29.82 14.11 Both chr10 7646 14030664 14030592 Sup CTA atcatgggat ctaagacctc 0 0 60.78 42.26 18.52 Eufind chr10 7661 13803301 13803229 Gly CCC ataaaagact ctagatccca 0 0 44.57 37.51 7.06 Both chr10 7667 13737265 13737193 Gly CCC cagagggact ctggatccca 0 0 40.66 24.51 16.15 Both chr10 7681 13557864 13557793 Trp CCA caggaggact ctagacccga 0 0 44.62 33.07 11.55 Both chr10 7732 12568418 12568347 Gln CTG tgagcgtggc gtactccttt 0 0 73.65 50.36 23.29 Both chr10 7778 11756994 11756922 Gly TCC ttaaactact ctaagatccc 0 0 46.13 25.42 20.71 Both chr10 7934 7868730 7868658 Arg CCG tcaaaggatt cttgtctcac 0 0 51.27 38.55 12.72 Both chr10 7986 6677934 6677863 Glu TTC gggaatgact ttaagatccc 0 0 40.46 28.07 12.39 Both chr10 8014 5720524 5720452 Gly CCC agcagggact gtagattcca 0 0 50.03 35.74 14.29 Both chr10 8050 4807207 4807136 SeC TCA ccttaagact gatcccctgg 0 0 52.53 0.00 0.00 Both chr10 8126 2488616 2488545 Tyr GTA tttagctatt gatcccctgg 0 0 55.38 46.94 8.44 Eufind   Sequence Name tRNA # tRNA Bounds tRNA Isotype Anticodon Upstream Region Downstream Region Intron Bounds Scores First-Pass Scanner Begin End Begin End Total (Cove) HMM 2' Str chr11 10 222960 223032 Gly CCC ctttgggact ctagatccta 0 0 47.40 28.78 18.62 Both chr11 12 244474 244566 Trp CCA cgtcttgggc gttctgcatg 244511 244530 29.77 22.37 7.40 Both chr11 41 896975 897046 Gly CCC gttctgaact ctaggtccta 0 0 36.93 23.00 13.93 Both chr11 51 1022099 1022171 Gly TCC ctctgggatt ctaagatcct 0 0 56.96 48.08 8.88 Both chr11 65 1204765 1204837 Undet ??? ctgagggact ctagatccta 0 0 44.44 38.76 5.68 Both chr11 66 1217264 1217336 Gly CCC cctggggact tcagatccca 0 0 34.40 22.68 11.72 Both chr11 118 1987422 1987494 Arg CCT acagaggact ctaagatccc 0 0 39.18 30.34 8.84 Both chr11 121 2025931 2026003 Trp CCA gagtgggact ctagattctc 0 0 22.27 16.18 6.09 Both chr11 175 2668630 2668702 Gly CCC cacagggatt ctagatcctg 0 0 44.82 32.56 12.26 Both chr11 177 2685120 2685192 Arg CCT gcaagcgcct ctggatcact 0 0 52.75 47.67 5.08 Both chr11 187 2918199 2918271 Gly CCC tactgggact ctagacccac 0 0 42.65 24.44 18.21 Both chr11 250 4229738 4229810 Glu CTC tggcaggact ctggatctca 0 0 54.51 45.53 8.98 Both chr11 274 4559316 4559387 Trp CCA ctggtggaat caaagatcct 0 0 43.54 28.94 14.60 Both chr11 281 4746685 4746757 Sup CTA gagcaggact ctaagatccc 0 0 44.77 32.75 12.02 Both chr11 307 5263737 5263809 Gly CCC taaagggact ctagatcttg 0 0 39.90 30.80 9.10 Both chr11 311 5368226 5368298 Gly CCC gagagagact ctagatccca 0 0 48.14 37.39 10.75 Both chr11 330 5711380 5711452 Arg CCT ggcggagact ctagatcccg 0 0 44.09 31.06 13.03 Both chr11 343 6062415 6062486 Cys GCA cagaggggct gatcccctgg 0 0 43.39 38.32 5.07 Both chr11 358 6279191 6279263 Glu TTC gtgaaggact tcaagatctg 0 0 56.55 38.75 17.80 Eufind chr11 360 6286634 6286706 Gly CCC tcctggggct ctgaggtccc 0 0 42.76 37.09 5.67 Both chr11 577 10782726 10782798 Glu TTC agctgggaat ctaagatccc 0 0 49.00 35.41 13.59 Both chr11 651 13402559 13402631 Gly CCC gagagggact ctagatccca 0 0 34.13 23.97 10.16 Both chr11 687 14330120 14330192 Trp CCA tcaagggact ctagattcca 0 0 50.28 37.96 12.32 Both chr11 789 18000274 18000345 Asp GTC gatcagaagt tgaagtccca 0 0 40.19 32.69 7.50 Both chr11 829 19588491 19588563 Met CAT tctagggact atagatccca 0 0 55.96 46.39 9.57 Both chr11 838 19843145 19843216 Cys ACA tttgtggact gatcctctgg 0 0 61.45 52.25 9.20 Both chr11 855 20187242 20187314 Gly TCC catagggact ctagatccca 0 0 35.44 27.12 8.32 Both chr11 892 20909741 20909812 Glu CTC ttttgtgact ctagattcca 0 0 32.23 26.92 5.31 Both chr11 895 20983490 20983562 Gly TCC cagggggaca ctaagatcct 0 0 56.82 40.95 15.87 Eufind chr11 915 21395254 21395326 Glu CTC aaaacagact ctaagattcc 0 0 51.91 39.58 12.33 Both chr11 1143 26502587 26502679 Ile TAT ggtaagcgga tgaccctttt 26502625 26502643 68.11 39.92 28.19 Both chr11 1221 28411969 28412041 Glu TTC aggggggaat tgaagttccc 0 0 59.28 40.64 18.64 Eufind chr11 1285 30091494 30091566 Gly TCC aggagggcct ctagatccca 0 0 49.85 42.46 7.39 Both chr11 1286 30102233 30102305 Gly TCC ttggggtact ctaagatcct 0 0 50.89 40.06 10.83 Both chr11 1300 30526576 30526648 Gly CCC acaggagact ctagatcccg 0 0 39.30 23.96 15.34 Both chr11 1303 30683214 30683286 Gly CCC atatgggact ctagatccca 0 0 35.51 25.12 10.39 Both chr11 1366 31824202 31824273 Cys GCA ctggtggctt gatcccctgg 0 0 57.24 48.48 8.76 Eufind chr11 1367 31838487 31838558 Cys ACA gccttagagc gacctcctgg 0 0 37.12 27.43 9.69 Both chr11 1593 39456729 39456801 Glu CTC agatgggaat ctaggatctc 0 0 56.29 40.63 15.66 Eufind chr11 1598 39554324 39554395 Glu TTC gacagcgaat ctaagatccc 0 0 47.62 33.82 13.80 Both chr11 1661 41268333 41268405 Tyr ATA tgctagggct atcttctgga 0 0 59.73 43.30 16.43 Eufind chr11 1664 41326438 41326510 Gly CCC cccggggatt ctagatccca 0 0 35.58 26.23 9.35 Both chr11 1687 41777821 41777892 Cys GCA aaatcgggct gatcccctgg 0 0 61.17 51.68 9.49 Eufind chr11 1786 45106152 45106222 Ala TGC aatagggact ctgagattcc 0 0 43.90 37.65 6.25 Both chr11 1831 45840722 45840793 Gly CCC ggagggaact ctagatcccg 0 0 49.09 37.60 11.49 Both chr11 1893 47757960 47758029 Trp CCA gtaggaactt ctaagacttc 0 0 26.66 12.44 14.22 Both chr11 1937 48300437 48300509 Gly TCC ccaggggact gatactgcaa 0 0 48.91 43.56 5.35 Both chr11 1979 49141615 49141686 Cys ACA ctgtgtgact gatctcctgg 0 0 56.98 48.63 8.35 Both chr11 2119 50778719 50778791 Glu TTC ccttagggaa ctaaaattct 0 0 58.19 49.56 8.63 Both chr11 2121 50795868 50795940 Arg TCG ttcagggact ctagatccta 0 0 42.55 32.67 9.88 Both chr11 2179 51377207 51377279 Gly CCC ttttgggatt ctagatccca 0 0 52.99 36.15 16.84 Both chr11 2202 51688900 51688972 Gly CCC tctgaggact ctaggggcca 0 0 54.58 41.11 13.47 Both chr11 2218 51850210 51850282 Gly CCC atgagagact ctagatctca 0 0 52.40 42.58 9.82 Both chr11 2260 53119033 53119104 Trp CCA gtgagggact ctgggattcc 0 0 50.77 44.67 6.10 Both chr11 2411 57713510 57713582 Trp CCA tactaggact ctagatgcca 0 0 39.42 33.53 5.89 Both chr11 2503 61992485 61992557 Gly CCC ctctgggact ctagatccca 0 0 67.77 51.40 16.37 Both chr11 2510 62088051 62088123 Glu TTC atactagagt cgaagatcct 0 0 36.78 30.54 6.24 Both chr11 2783 70017368 70017440 Gly CCC agaggggact ctagatccca 0 0 51.08 40.34 10.74 Both chr11 2791 70242206 70242278 Gly TCC tattgggcct ataatttaat 0 0 47.82 39.33 8.49 Both chr11 2834 70869324 70869396 Gly TCC tattgggatt ataagatccc 0 0 52.34 46.31 6.03 Both chr11 2856 71316082 71316154 Glu TTC ctatgggagc ctaagatccc 0 0 48.04 33.88 14.16 Both chr11 2894 72758403 72758475 Ser GGA aaaaggggct ataacaggat 0 0 57.98 47.14 10.84 Eufind chr11 2913 73139071 73139143 Gly CCC tacacggact ctagatcctg 0 0 49.26 39.67 9.59 Both chr11 2916 73248168 73248240 Ala TGC gatggggact ctaagattgc 0 0 49.74 37.57 12.17 Both chr11 2959 74076563 74076634 Gly CCC cttagggatt ctagacccca 0 0 42.47 28.94 13.53 Both chr11 2979 74435635 74435705 Gly CCC aaaagggact ctagatccca 0 0 49.80 32.77 17.03 Both chr11 3030 75469807 75469880 Gly CCC ttacagggct ctagatccca 0 0 26.92 16.29 10.63 Both chr11 3035 75492184 75492256 Cys ACA aacagggact atctcctgga 0 0 55.44 45.92 9.52 Eufind chr11 3068 75982676 75982747 Cys GCA gagaaaggct gatcccctga 0 0 55.52 45.45 10.07 Eufind chr11 3079 76107243 76107315 Gly TCC tggaggaact gattctgtgt 0 0 41.76 26.46 15.30 Both chr11 3103 76629489 76629561 Gly CCC aatctggact cccaaacatg 0 0 41.56 35.30 6.26 Both chr11 3210 79759679 79759751 Lys CTT ttagaaggaa taagaccctg 0 0 54.00 32.95 21.05 Both chr11 3254 80802946 80803018 Gly CCC tttcaggact ctggatcccc 0 0 48.92 35.92 13.00 Both chr11 3262 80976787 80976859 Gly TCC gccttggact ctgagatccc 0 0 44.97 36.91 8.06 Both chr11 3276 81254746 81254818 Gly CCC ctatgggact ctagacccca 0 0 36.45 26.83 9.62 Both chr11 3400 84483945 84484017 Gly CCC ttcggggact ctagatctcg 0 0 47.45 38.33 9.12 Both chr11 3416 84991155 84991227 Gly GCC acgtgggact ctagatccca 0 0 31.51 25.14 6.37 Both chr11 3473 86064449 86064521 Cys ACA tttgctagct atctggagaa 0 0 55.42 44.59 10.83 Eufind chr11 3633 89660999 89661071 Gly TCC acaatagact ctaaattctt 0 0 43.69 35.24 8.45 Both chr11 3678 90429261 90429332 Gly TCC tgaagcaact ctagatccca 0 0 50.11 38.15 11.96 Both chr11 3785 92396981 92397053 Glu TTC ccatgacagt cgaagatctt 0 0 44.77 24.24 20.53 Both chr11 3801 92804804 92804875 Cys GCA cagctccgat gatcccctag 0 0 55.43 46.68 8.75 Both chr11 3858 94484516 94484587 Ser ACT gacacggact gatcctctgg 0 0 56.20 48.64 7.56 Eufind chr11 3929 96088850 96088922 Gly CCC aatagggacg ctagctcttg 0 0 39.85 32.92 6.93 Both chr11 3931 96100684 96100756 Gly CCC ttggtagact ctagatcctg 0 0 36.77 25.48 11.29 Both chr11 3980 97295437 97295509 Gly TCC gccagggact ctagacctca 0 0 51.34 38.44 12.90 Both chr11 4048 99239103 99239175 Gly ACC tcccaggact ttaggttcta 0 0 47.06 41.98 5.08 Both chr11 4058 99495624 99495695 Gly CCC cgaggtgact gcagatacca 0 0 44.12 29.15 14.97 Both chr11 4112 100479816 100479888 Gly CCC tataggggct ctagatccca 0 0 45.54 33.27 12.27 Both chr11 4170 101990666 101990737 Cys GCA taaaagggct gatcccctgg 0 0 56.05 47.75 8.30 Eufind chr11 4171 101997023 101997095 Gly CCC taatggggct ctagatccca 0 0 45.05 36.84 8.21 Both chr11 4176 102052822 102052893 Glu TTC tagaggaaat ctaagatcct 0 0 52.37 42.21 10.16 Both chr11 4182 102105895 102105967 Trp CCA atccaggact ctagatctca 0 0 38.54 28.25 10.29 Both chr11 4213 102503775 102503847 Trp CCA ccccagaact cgagatccca 0 0 50.24 36.19 14.05 Both chr11 4224 102607992 102608064 Trp CCA atagggaact ctagatccca 0 0 55.95 42.72 13.23 Eufind chr11 4269 103204953 103205025 Gly CCC tacaggaact ctagatccca 0 0 38.87 32.79 6.08 Both chr11 4382 104891982 104892054 Gly CCC tcttggaact ctaaatcccc 0 0 57.34 46.46 10.88 Both chr11 4413 105389339 105389410 Glu TTC cccagggacc ctgagatcct 0 0 53.13 39.18 13.95 Both chr11 4415 105502462 105502534 Gly CCC atgagagact ctggattcca 0 0 41.64 34.09 7.55 Both chr11 4492 106733462 106733534 Glu CTC cgtaaggaat ctacgatccc 0 0 53.57 45.33 8.24 Both chr11 4524 107561178 107561250 Gly CCC tctggggacg caagatcctg 0 0 37.24 32.00 5.24 Both chr11 4533 107941567 107941639 Gly CCC tacagggact caaaatccca 0 0 42.78 25.25 17.53 Both chr11 4556 108646933 108647004 SeC TCA acctgggact ctagatccca 0 0 51.07 0.00 0.00 Eufind chr11 4577 109465558 109465629 Arg CCT actagagact ctagctccca 0 0 48.21 35.88 12.33 Both chr11 4634 108404673 108404594 Ala AGC ggcatgggct gatcccttct 108404633 108404629 35.84 25.02 10.82 Both chr11 4638 108319213 108319142 Cys GCA aatgagggct gatgccctga 0 0 58.64 49.93 8.71 Eufind chr11 4759 105122868 105122796 Gly TCC actggggact ctaggtcccg 0 0 44.57 24.26 20.31 Both chr11 4770 105000739 105000666 Arg CCT ttacgggact ctagatccca 0 0 51.17 37.41 13.76 Both chr11 4826 104146024 104145953 Glu TTC tgctgggaat ctaagatcct 0 0 52.18 46.30 5.88 Both chr11 4880 103448059 103447987 Gly TCC acttgggact gtaggatccc 0 0 51.31 39.74 11.57 Both chr11 4883 103435269 103435197 Glu CTC atgagggact catgccacat 0 0 46.81 40.63 6.18 Both chr11 4923 102664633 102664561 Trp CCA ccccagaact cgagatccca 0 0 50.24 36.19 14.05 Both chr11 4933 102560871 102560799 Trp CCA atagggaact ctagatccca 0 0 55.95 42.72 13.23 Eufind chr11