tRNAscan-SE Analysis of the Brucella suis 1330 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by Genome Locus

plain text version

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chrI	1	207695	207771	Pro	CGG	0	0	88.00	62.25	25.75	Both
chrI	2	265276	265350	Thr	GGT	0	0	86.73	63.24	23.49	Both
chrI	3	513096	513170	Gln	TTG	0	0	74.48	42.61	31.87	Both
chrI	4	705132	705208	Pro	TGG	0	0	93.11	69.33	23.78	Both
chrI	5	705770	705846	Arg	TCT	0	0	90.69	75.56	15.13	Both
chrI	6	778480	778556	Asp	GTC	0	0	92.83	78.81	14.02	Both
chrI	7	871385	871467	Leu	TAG	0	0	74.64	53.03	21.61	Both
chrI	8	936870	936946	Arg	CCG	0	0	90.06	67.51	22.55	Both
chrI	9	1019437	1019522	Leu	TAA	0	0	77.49	51.48	26.01	Both
chrI	10	1048185	1048269	Leu	GAG	0	0	70.40	35.25	35.15	Both
chrI	11	1055930	1056014	Leu	GAG	0	0	70.40	35.25	35.15	Both
chrI	12	1241104	1241178	Glu	TTC	0	0	72.14	48.37	23.77	Both
chrI	13	1241326	1241400	Glu	TTC	0	0	72.14	48.37	23.77	Both
chrI	14	1297468	1297543	Lys	CTT	0	0	96.09	72.43	23.66	Both
chrI	15	1547758	1547834	Met	CAT	0	0	86.65	69.30	17.35	Both
chrI	16	1564017	1564090	Gln	CTG	0	0	66.55	41.15	25.40	Both
chrI	17	1603269	1603343	Glu	CTC	0	0	65.98	40.12	25.86	Both
chrI	18	1781424	1781513	Ser	CGA	0	0	83.06	57.91	25.15	Both
chrI	19	1881678	1881762	Leu	CAA	0	0	76.80	53.28	23.52	Both
chrI	20	1963450	1963526	Arg	CCT	0	0	88.11	66.16	21.95	Both
chrI	21	1919204	1919129	Ala	CGC	0	0	85.21	69.67	15.54	Both
chrI	22	1793382	1793306	Ile	GAT	0	0	99.09	80.33	18.76	Both
chrI	23	1793292	1793217	Ala	TGC	0	0	91.73	79.95	11.78	Both
chrI	24	1789551	1789475	Met	CAT	0	0	81.76	54.87	26.89	Both
chrI	25	1588320	1588244	Ile	GAT	0	0	99.09	80.33	18.76	Both
chrI	26	1588230	1588155	Ala	TGC	0	0	91.73	79.95	11.78	Both
chrI	27	1584489	1584413	Met	CAT	0	0	81.76	54.87	26.89	Both
chrI	28	1549590	1549514	His	GTG	0	0	86.57	62.98	23.59	Both
chrI	29	1429378	1429302	Met	CAT	0	0	87.64	69.81	17.83	Both
chrI	30	1220255	1220171	Tyr	GTA	0	0	73.28	41.17	32.11	Both
chrI	31	1220146	1220073	Gly	TCC	0	0	83.28	66.52	16.76	Both
chrI	32	1218650	1218575	Trp	CCA	0	0	88.85	70.38	18.47	Both
chrI	33	937721	937648	Gly	CCC	0	0	65.12	39.40	25.72	Eufind
chrI	34	936453	936379	Val	CAC	0	0	88.42	66.85	21.57	Both
chrI	35	910625	910550	Thr	TGT	0	0	94.13	76.84	17.29	Both
chrI	36	778070	777995	Val	TAC	0	0	92.99	68.88	24.11	Both
chrI	37	764424	764348	Pro	GGG	0	0	81.90	58.98	22.92	Both
chrI	38	632055	631965	Ser	GCT	0	0	74.16	44.49	29.67	Both
chrI	39	279497	279421	Arg	ACG	0	0	91.80	71.89	19.91	Both
chrI	40	258990	258915	Phe	GAA	0	0	93.28	73.76	19.52	Both
chrI	41	28391	28316	Ala	GGC	0	0	87.70	70.59	17.11	Both

chrII	1	604389	604462	Cys	GCA	0	0	66.24	38.37	27.87	Both
chrII	2	818236	818311	Thr	CGT	0	0	93.84	64.27	29.57	Both
chrII	3	878530	878604	Gly	GCC	0	0	88.17	69.67	18.50	Both
chrII	4	1007558	1007632	Gly	GCC	0	0	88.17	69.67	18.50	Both
chrII	5	1037602	1037688	Leu	CAG	0	0	78.71	51.10	27.61	Both
chrII	6	1055010	1055099	Ser	GGA	0	0	77.71	49.82	27.89	Both
chrII	7	1107859	1107783	Ile	GAT	0	0	99.09	80.33	18.76	Both
chrII	8	1107769	1107694	Ala	TGC	0	0	91.73	79.95	11.78	Both
chrII	9	1104028	1103952	Met	CAT	0	0	81.76	54.87	26.89	Both
chrII	10	608824	608750	Asn	GTT	0	0	89.56	67.60	21.96	Both
chrII	11	572492	572417	Lys	TTT	0	0	95.04	69.00	26.04	Both
chrII	12	540041	539952	Ser	TGA	0	0	74.18	48.73	25.45	Both
chrII	13	305058	304982	Asp	GTC	0	0	92.83	78.81	14.02	Both
chrII	14	39495	39421	Val	GAC	0	0	86.72	64.03	22.69	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.