tRNAscan-SE Analysis of the Brucella suis 1330 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAG...........GtCAGCGGTTCGATCCCGCTTGGCTCCACCA chrI.trna41-AlaGGC Sc: 87.70  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTGTAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAG...........GtCAGGGGTTCGATCCCCCTCAGCTCCACCA chrI.trna21-AlaCGC Sc: 85.21  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA chrII.trna8-AlaTGC Sc: 91.73  
GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA chrI.trna26-AlaTGC Sc: 91.73  
GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA chrI.trna23-AlaTGC Sc: 91.73  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGG...........GtCAGAGGTTCGAATCCTTTCGGGTGCGCCA chrI.trna39-ArgACG Sc: 91.80  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGAAGGCAGAG...........GcCACAGGTTCGAATCCTGTCGGGTGCGCCA chrI.trna8-ArgCCG Sc: 90.06  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCCGTAGCTCAGTAGGAtAGAGCGACAGATTCCTAATCTGTAG...........GtCACAGGTTCGATTCCTGTCGGGATCACCA chrI.trna20-ArgCCT Sc: 88.11  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGTCCCGTAGCTCAGTTGGAtAGAGCACCGGCCTTCTAAGCCGATG...........GtCGCAGGTTCGAATCCTGCCGGGATCGCCA chrI.trna5-ArgTCT Sc: 90.69  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCGGTAGCTCAGCGGTA.GAGCAACCGGCTGTTAACCGGTTG...........GtCGCTGGTTCGAATCCGGCCCGGGGAGCCA chrII.trna10-AsnGTT Sc: 89.56  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA chrII.trna13-AspGTC Sc: 92.83  
GCGGGTGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA chrI.trna6-AspGTC Sc: 92.83  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCTCGTGGCGGAGTGGTT.ACGCAGAGGACTGCAAATCCTTGC...........ACCCCGGTTCGATTCCGGGCGAGGCCTCCA chrII.trna1-CysGCA Sc: 66.24  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGGATAGTTTAAGGGTA.GAACAGCGGACTCTGACTCCGTTA...........G.TCTTGGTTCGAATCCAGGTCCCCCAGCCA chrI.trna16-GlnCTG Sc: 66.55  

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGCGTAGCCAAGCGGTA.AGGCAGCGGTTTTTGGTACCGCCA...........TtCCCTGGTTCGAATCCAGGCGCCCCAGCCA chrI.trna3-GlnTTG Sc: 74.48  



Glu tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCGCCCATCGTCTAGCGGTcA.GGACGGCGCCCTCTCACGGCGCAA...........ACAGGGGTTCGATTCCCCTTGGGCGTACCA chrI.trna17-GluCTC Sc: 65.98  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCGCCCATCGTCTAGCGGTtA.GGACGCCGCCCTTTCACGGCGGAA...........ACAGGGGTTCGATTCCCCTTGGGCGTACCA chrI.trna13-GluTTC Sc: 72.14  
GCGCCCATCGTCTAGCGGTtA.GGACGCCGCCCTTTCACGGCGGAA...........ACAGGGGTTCGATTCCCCTTGGGCGTACCA chrI.trna12-GluTTC Sc: 72.14  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGAGGGTTCGAATCCCTTCGCCCGCTCCA chrII.trna4-GlyGCC Sc: 88.17  
GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGAGGGTTCGAATCCCTTCGCCCGCTCCA chrII.trna3-GlyGCC Sc: 88.17  

>>>>>>>..>.>>........<<.<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTATGATGTAATGGTA.GCCTGTCAGCTTCCCAAGCTGAAC...........G.CGCGGGTTCGATTCCCGCTACCCGCTCCA chrI.trna33-GlyCCC Sc: 65.12  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTATAGCTCAATGGTA.GAGCAGCAGCCTTCCAAGCTGAAT...........A.CGCGGGTTCGATTCCCGCTACCCGCTCCA chrI.trna31-GlyTCC Sc: 83.28  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGTCGTAGCTCAGTTGGTtAGAGCGCAGGATTGTGGCTCCTGAG...........GtCGTTGGTTCAACTCCAACCGACCGTACCA chrI.trna28-HisGTG Sc: 86.57  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA chrII.trna7-IleGAT Sc: 99.09  
GGGCTTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA chrI.trna25-IleGAT Sc: 99.09  
GGGCTTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA chrI.trna22-IleGAT Sc: 99.09  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGG.GCAA.......CCCGTGGAAGTTCGAGTCTTCT.CGACCGCACCA chrI.trna11-LeuGAG Sc: 70.40  
GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGG.GCAA.......CCCGTGGAAGTTCGAGTCTTCT.CGACCGCACCA chrI.trna10-LeuGAG Sc: 70.40  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGATGGCGGAATTGGTaGACGCACCAGCTTCAGGTGCTGGCGCTCGCAA......GGGCGTGGAGGTTCGAGTCCTCT.TCTGGGCACCA chrII.trna5-LeuCAG Sc: 78.71  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>..............<<..>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGGGA..........GACCGTGGGGGTTCGAGTCCCTC.CATCCGCACCA chrI.trna7-LeuTAG Sc: 74.64  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGTGGAACTGGTaGACGCGCCGGACTCAAAATCCGGTTCC.GAAA.......GGAGTGTCGGTTCGATTCCGAC.CACCCGCACCA chrI.trna19-LeuCAA Sc: 76.80  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGTCGTGGCGAAATTGGTaTACGCAACGGACTTAAAATCCGTCGTCTTTA.......AGACTTGCGGGTTCAAGTCCCGC.CGACCGCACCA chrI.trna9-LeuTAA Sc: 77.49  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCGTAGGTTCGATCCCTACATCACCCACCA chrI.trna14-LysCTT Sc: 96.09  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCGCGTAGCTCAGCCGGTAGAGCAACTGACTTTTAATCAGTAG...........GtCCAGGGTTCGAATCCCTGCGCGCTCACCA chrII.trna11-LysTTT Sc: 95.04  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAATT.GGTtAGAGCCGGCGGCTCATAACCGCTTG...........GtTGGGGGTTCGAGTCCCTCCGGGCCCACCA chrI.trna29-MetCAT Sc: 87.64  
GGCGGAGTAGCTCAGTA.GGTtAGAGCAGAGGAATCATAATCCTTGT...........GtCGGGGGTTCGAATCCCTCCTCCGCTACCA chrI.trna15-MetCAT Sc: 86.65  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chrII.trna9-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chrI.trna27-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chrI.trna24-MetCAT Sc: 81.76  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCGGATAGCTCAGTTGGTAGAGCAGCGGATTGAAAATCCGCGT...........GtCGGTGGTTCGAATCCGCCTCCGGGCACCA chrI.trna40-PheGAA Sc: 93.28  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTAGCGCAGCCcGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGTGGGTTCGAATCCCGCCGCTCCGACCA chrI.trna37-ProGGG Sc: 81.90  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTAGCGCAGCCtGGTAGCGCACCTCGTTCGGGACGAGGGG...........GtCGGAGGTTCGAATCCTCTCACTCCGACCA chrI.trna1-ProCGG Sc: 88.00  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTAGCGCAGTCtGGTAGCGCACCTGATTTGGGATCAGGGG...........GtCGCAGGTTCGAATCCTGCCGCTCCGACCA chrI.trna4-ProTGG Sc: 93.11  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTtgA.AGGCGCACGCCTGGAACGCGTGT.ATACGGGAAA..CCGTAT.CGAGGGTTCGAATCCCTC..TCTCTCCGCCA chrII.trna6-SerGGA Sc: 77.71  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCTGAGTGGTtgA.AAGCACCGCACTCGAAATGCGGC.ATGGGGGCAA..CTCCAT.CGGGGGTTCGAATCCCTC..CCTCTCCGCCA chrI.trna18-SerCGA Sc: 83.06  

>>>.>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<..>>>>>.......<<<<<..<<<.<<<....
GGAAGGGTGGCCGAGCGGTttA.AGGCACCGGTCTTGAAAACCGGC.GTGCGAGAGA..TCGTAC.CGTGGGTTCGAATCCCAC..CCCCTCCGCCA chrII.trna12-SerTGA Sc: 74.18  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>........<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTcgA.AGGCGCTCCCCTGCTAAGGGAGTAGACCT.CAAAa..GGGTCTCGTGGGTTCGAATCCCAT..CCTCTCCGCCA chrI.trna38-SerGCT Sc: 74.16  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGCGGTAGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGAGAGTTCAATCCTCTCTCGCAGCACCA chrI.trna2-ThrGGT Sc: 86.73  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCTTTAGCTCAGTTGGTA.GAGCACATCATTCGTAATGATGGG...........GtCGCGTGTTCGAGTCACGCAAGCGGCACCA chrII.trna2-ThrCGT Sc: 93.84  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCTTATAGCTCAGTTGGTA.GAGCACCTGATTTGTAATCAGGGG...........GtCGGGAGTTCGAGTCTCTCTGGGGGCACCA chrI.trna35-ThrTGT Sc: 94.13  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTATAGCTCAGTTGGTAGAGCGACGGTCTCCAAAACCGTAG...........GtCGCGGGTTCGAACCCTGCTGCCCCTGCCA chrI.trna32-TrpCCA Sc: 88.85  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>>.......<<.<...>>>>>.......<<<<<<<<<<<<....
GGAGGGATGCCCGAGTGGTtaA.AGGGGACGGACTGTAAATCCGTTGGCTA.......TGCCTaCGTTGGTTCAAATCCAACTCCCTCCACCA chrI.trna30-TyrGTA Sc: 73.28  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGTGTAGCTCAGC.GGGA.GAGCACTACGTTGACATCGTAGGG...........GtCACAGGTTCAATCCCTGTCACGCCCACCA chrII.trna14-ValGAC Sc: 86.72  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCGTAGCTCAGC.GGGA.GAGCACTCCCTTCACACGGGAGGG...........GtCACAGGTTCAATCCCTGTCGCGCCCACCA chrI.trna34-ValCAC Sc: 88.42  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCAGTTGGTA.GAGCGCTTCGTTTACACCGAAGAT...........GtCGGGAGTTCGAGTCTCTCATCGCCCACCA chrI.trna36-ValTAC Sc: 92.99

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.