tRNAscan-SE Analysis of the Brucella abortus 9-941 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chrI	21	1935939	1935864	Ala	CGC	0	0	82.40	69.28	13.12	Both

chrI	41	28252	28177	Ala	GGC	0	0	87.70	70.59	17.11	Both

chrI	23	1810151	1810076	Ala	TGC	0	0	91.73	79.95	11.78	Both
chrI	26	1606045	1605970	Ala	TGC	0	0	91.73	79.95	11.78	Both
chrII	9	1062881	1062806	Ala	TGC	0	0	91.73	79.95	11.78	Both

chrI	39	301491	301415	Arg	ACG	0	0	91.80	71.89	19.91	Both

chrI	8	955875	955951	Arg	CCG	0	0	90.06	67.51	22.55	Both

chrI	20	1980111	1980187	Arg	CCT	0	0	88.11	66.16	21.95	Both

chrI	5	727475	727551	Arg	TCT	0	0	90.69	75.56	15.13	Both

chrII	1	608266	608340	Asn	GTT	0	0	89.56	67.60	21.96	Both

chrI	6	800160	800236	Asp	GTC	0	0	92.83	78.81	14.02	Both
chrII	4	866586	866662	Asp	GTC	0	0	92.83	78.81	14.02	Both

chrII	11	612702	612629	Cys	GCA	0	0	66.24	38.37	27.87	Both

chrI	16	1581832	1581905	Gln	CTG	0	0	66.55	41.15	25.40	Both

chrI	3	534718	534792	Gln	TTG	0	0	74.48	42.61	31.87	Both

chrI	17	1621085	1621159	Glu	CTC	0	0	65.98	40.12	25.86	Both

chrI	12	1259166	1259240	Glu	TTC	0	0	64.17	40.40	23.77	Both
chrI	13	1259387	1259461	Glu	TTC	0	0	66.66	47.16	19.50	Both

chrI	33	956726	956653	Gly	CCC	0	0	65.12	39.40	25.72	Eufind

chrII	13	338590	338516	Gly	GCC	0	0	86.28	67.78	18.50	Both
chrII	5	962978	963052	Gly	GCC	0	0	88.17	69.67	18.50	Both

chrI	31	1238254	1238181	Gly	TCC	0	0	83.28	66.52	16.76	Both

chrI	28	1567655	1567579	His	GTG	0	0	86.57	62.98	23.59	Both

chrI	22	1810241	1810165	Ile	GAT	0	0	99.09	80.33	18.76	Both
chrI	25	1606135	1606059	Ile	GAT	0	0	99.09	80.33	18.76	Both
chrII	8	1062971	1062895	Ile	GAT	0	0	99.09	80.33	18.76	Both

chrI	19	1898408	1898492	Leu	CAA	0	0	76.80	53.28	23.52	Both

chrII	6	992993	993079	Leu	CAG	0	0	78.71	51.10	27.61	Both

chrI	11	1073277	1073361	Leu	GAG	0	0	70.40	35.25	35.15	Both
chrI	10	1065355	1065438	Leu	GAG	0	0	71.23	34.77	36.46	Both

chrI	9	1038407	1038492	Leu	TAA	0	0	77.49	51.48	26.01	Both

chrI	7	893096	893178	Leu	TAG	0	0	74.64	53.03	21.61	Both

chrI	14	1315435	1315510	Lys	CTT	0	0	96.09	72.43	23.66	Both

chrII	2	644584	644659	Lys	TTT	0	0	95.04	69.00	26.04	Both

chrI	24	1806411	1806335	Met	CAT	0	0	81.76	54.87	26.89	Both
chrI	27	1602305	1602229	Met	CAT	0	0	81.76	54.87	26.89	Both
chrII	10	1059141	1059065	Met	CAT	0	0	81.76	54.87	26.89	Both
chrI	15	1565823	1565899	Met	CAT	0	0	86.65	69.30	17.35	Both
chrI	29	1447443	1447367	Met	CAT	0	0	87.64	69.81	17.83	Both

chrI	40	281215	281140	Phe	GAA	0	0	93.28	73.76	19.52	Both

chrI	1	209057	209133	Pro	CGG	0	0	88.00	62.25	25.75	Both

chrI	37	786101	786025	Pro	GGG	0	0	81.90	58.98	22.92	Both

chrI	4	726837	726913	Pro	TGG	0	0	93.11	69.33	23.78	Both

chrI	18	1798296	1798385	Ser	CGA	0	0	83.06	57.91	25.15	Both

chrI	38	653417	653327	Ser	GCT	0	0	74.16	44.49	29.67	Both

chrII	7	1010420	1010509	Ser	GGA	0	0	77.71	49.82	27.89	Both

chrII	3	677020	677109	Ser	TGA	0	0	74.18	48.73	25.45	Both

chrII	12	398882	398807	Thr	CGT	0	0	93.84	64.27	29.57	Both

chrI	2	287502	287576	Thr	GGT	0	0	86.73	63.24	23.49	Both

chrI	35	932316	932241	Thr	TGT	0	0	94.13	76.84	17.29	Both

chrI	32	1236758	1236683	Trp	CCA	0	0	88.85	70.38	18.47	Both

chrI	30	1238363	1238279	Tyr	GTA	0	0	73.28	41.17	32.11	Both

chrI	34	955458	955384	Val	CAC	0	0	88.42	66.85	21.57	Both

chrII	14	39298	39224	Val	GAC	0	0	86.72	64.03	22.69	Both

chrI	36	799750	799675	Val	TAC	0	0	92.99	68.88	24.11	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.