tRNAscan-SE Analysis of the Bradyrhizobium japonicum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCGGCGGTTCGATCCCGCCTGGCTCCACCA chr.trna46-AlaGGC Sc: 87.23  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCATAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAG...........GtCGGCGGTTCGATCCCGCCTGGCTCCACCA chr.trna1-AlaCGC Sc: 84.51  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAG...........GtCGTCGGTTCGATCCCGTCTGGCTCCACCA chr.trna6-AlaTGC Sc: 86.35  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCCCGTAGCTCAGCTGGAtAGAGCATCAGACTACGAATCTGAGG...........GtCGGACGTTCGAATCGTTCCGGGCGCGCCA chr.trna18-ArgACG Sc: 85.54  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAG...........GtCACACGTTCGAATCGTGTCGGGTGCGCCA chr.trna45-ArgCCG Sc: 86.37  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGG...........GtCGGAGGTTCGAATCCTTCCGAGCGCGCCA chr.trna30-ArgTCG Sc: 90.16  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCCGTAGCTCAGCCGGAtAGAGCGGCGGTTTCCTAAACCGTAG...........GtCGGATGTTCGAGTCATCCCGGGATCGCCA chr.trna51-ArgCCT Sc: 77.28  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCCATAGCTCAACTGGAtAGAGTAGCGGATTTCTACTCCGCGG...........GtTGCAGGTTCGAGTCCTGCTGGGATCGCCA chr.trna37-ArgTCT Sc: 80.78  



Asn tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCGGTAGCTCAGC.GGT.A.GAGCATCCGACTGTTAATCGGATG...........GtCGCTGGTTCGAATCCAGCCCGGGGAGCCA chr.trna12-AsnGTT Sc: 90.01  
>.>.>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<.<.<....
CAAGGGATAGCTCAGTTGGTtA.GAGCAGATGACTGTTAATCATCTT...........GtCGCGGGTTCGATTCCCGCTCCATCGC... chr.trna26-AsnGTT Sc: 68.95  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCTCTCGCGCCA chr.trna35-AspGTC Sc: 97.02  



Cys tRNAs



>>>>>>>..>>>..........<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCACGTGGCGGAGTGGTT.ACGCGCCGGTCTGCAAAACCGTTT...........ACTCGGGTTCGAGTCCCGACGTGGCCTCCA chr.trna11-CysGCA Sc: 66.18  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGAATGGTGTAACGGTA.GCACAACAGACTCTGACTCTGTTT...........G.TCTTGGTTCGAATCCAGGTTCCCCAGCCA chr.trna9-GlnCTG Sc: 68.00  

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGCGTAGCCAAGCGGTA.AGGCAGCGGATTTTGATTCCGCCA...........TtCGGAGGTTCGATCCCTCCCGCCCCAGCCA chr.trna8-GlnTTG Sc: 77.73  



Glu tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTCCCTTCGTCTAGCGGTtA.GGACGCGGCCCTCTCAAGGCTGAA...........ACAGGGGTTCGATTCCCCTAGGGAGCGCCA chr.trna22-GluCTC Sc: 68.86  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCTCCCTTCGTCTATCGGTtA.GGACGCCACCCTTTCACGGTGGAG...........AGAGCGGTTCGATTCCGCTAGGGAGCGCCA chr.trna38-GluTTC Sc: 60.15  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTGGTA.GAGCACGACCTTGCCAAGGTCGGG...........GtCGAGGGTTCGAGCCCCTTCGCCCGCTCCA chr.trna47-GlyGCC Sc: 88.70  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGCGTAGTTCAATGGTA.GAACGGCAGCTTCCCAAGCTGCAT...........A.CGAGGGTTCGATTCCCTTCGCCCGCTCCA chr.trna3-GlyCCC Sc: 80.62  

>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAATGGTA.GAGCAGCAGCCTTCCAAGCTGAAT...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA chr.trna28-GlyTCC Sc: 82.33  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAG...........GtCGGTGGTTCGAGCCCACCCAACTGTACCA chr.trna21-HisGTG Sc: 90.83  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAG...........GtCGGAAGTTCAAGTCTTCCCAGGCCCACCA chr.trna5-IleGAT Sc: 93.43  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>............<<..>>>>>.......<<<<<.<<<<<<<....
GCGCTCGTGGCGGAACTGGTaGACGCGCTGCCTTGAGGTGGCAGTGAG..TAAA....ATCGTGGGGGTTCGAGTCCCTC.CGAGCGCACCA chr.trna31-LeuGAG Sc: 68.28  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>........<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGTGGAATTGGTaGACGCGCTGGCTTCAGGTGCCAGTGGCT.TAAC...GGCCGTGAAGGTTCGAGTCCTTT.CCTGGGCACCA chr.trna2-LeuCAG Sc: 70.03  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGCGTGGCGGAACTGGTaGACGCGCTGGATTTAGGTTCCAGTGAC..GAAA....GTTGTGGGGGTTCGAGTCCCTC.CGCCCGCACCA chr.trna33-LeuTAG Sc: 76.68  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>..........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCC..GCAA....GGAGTGCTGGTTCGATTCCGGC.CAGGGGCACCA chr.trna43-LeuCAA Sc: 77.17  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>......<<<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGGCATGGCGGAATTGGTaGACGCAAGGGACTTAAAATCCCTCGGTGCGCAA..GCGCTGTGCCGGTTCGACCCCGGC.TGCCCGCACCA chr.trna16-LeuTAA Sc: 74.83  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCCCAGGTTCGAGCCCTGGTGCGCCCACCA chr.trna24-LysCTT Sc: 97.77  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCGCGTAGCTCAGCCGGTAGAGCACGTGACTTTTAATCACGGG...........GtCCTGGGTTCGAGCCCCAGCGCGCTCACCA chr.trna13-LysTTT Sc: 90.48  



Met tRNAs


>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGGGTAGCTCAGCT.GGTtA.GAGCACGGGAATCATAATCCTGGG...........GtCGGGGGTTCGAGTCCCTCTCCCGCTACCA chr.trna23-MetCAT Sc: 89.01  
.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCcGGT.A.GCTCGTCAGGCTCATAACCTGAAG...........GtCATAGGTTCAAATCCTATCCCCGCAACCA chr.trna19-MetCAT Sc: 83.88  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAAT..GGTtA.GAGCCGGCCGCTCATAACGGTCTG...........GtTGCAGGTTCGAGTCCTGCCGGGCCCACCA chr.trna42-MetCAT Sc: 83.74  
GGGCCTGTAGCTCAAT..GGTtA.GAGCCGGCCGCTCATAACGGTCTG...........GtTGCAGGTTCGAGTCCTGCCGGGCCCACCA chr.trna41-MetCAT Sc: 83.74  
GGGCCTGTAGCTCAAT..GGTtA.GAGCCGGCCGCTCATAACGGTCTG...........GtTGCAGGTTCGAGTCCTGCCGGGCCCACCA chr.trna39-MetCAT Sc: 83.74  



Phe tRNAs



>>>>>>.>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAG.GTAGCTCAGTTGGTA...GAGCATGCGACTGAAAATCGCAGT...........GtCGGTGGTTCGATTCCGCCCCTGGGCACCA chr.trna4-PheGAA Sc: 91.10  
GCAGGAcGTAGCTCA...TGGA...GAGCGTCGGGCTGAACGCCCGAAG...........G.CATCGGTTCGATTCCGGTCTCTTGCACAA chr.trna25-PheGAA Sc: 35.49  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTGGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGG...........GtCGGAGGTTCAAATCCTCTCGCTCCGACCA chr.trna32-ProGGG Sc: 80.04  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGTGTGGCTCAGCCcGGT.AGAGCACTGCGTTCGGGACGCAGGG...........GtCGCAGGTTCGAATCCTGCCACTCCGACCA chr.trna7-ProCGG Sc: 86.36  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTATAGCGCAGCCtGGT.AGCGCGGCAGTTTTGGGTACTGCAG...........GtCGTTGGTTCGAATCCAGCTGCCCCGACCA chr.trna10-ProTGG Sc: 79.83  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGTGGCttA.AGGCGCACGCTTGGAAAGCGTGTGTGCGG.GAAA..CCGTACCGTGGGTTCGAATCCCAC..TCTCTCCGCCA chr.trna50-SerGGA Sc: 81.68  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTtgA.ATGCACCGCACTCGAAATGCGGCATAGGT.GCAA..GCCTATCGGGGGTTCGAATCCCTC..CCTCTCCGCCA chr.trna49-SerCGA Sc: 78.76  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAAGGGTGGCCGAGTGGTttA.AGGCACCGGTCTTGAAAACCGGCGTGCCT.GCAA..GGGTACCGTGGGTTCGAATCCCAC..CCCTTCCGCCA chr.trna36-SerTGA Sc: 80.34  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGCtgA.AGGCAACGCTTTGCTAAAGCGTCATACGGTCTCAaGCTGTATCGAGGGTTCGAATCCCTC..CCTCTCCGCCA chr.trna14-SerGCT Sc: 75.28  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGCCGTAGCTCAGT.GGTA.GAGCACTCCATTGGTAATGGAGAG...........GtCGACAGTTCAATCCTGTCTGGCAGCACCA chr.trna44-ThrGGT Sc: 85.75  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCAATAGCTCAGTCGGTA.GAGCACGTCATTCGTAATGACGGG...........GtCGGGGGTTCGAATCCCTCTTGCGGCACCA chr.trna48-ThrCGT Sc: 96.14  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGCTTAGCTCAGC.GGTA.GAGCAGCGGTTTTGTAAACCGAAG...........GtCGGGGGTTCAATCCCCTCAGCCGGCACCA chr.trna15-ThrTGT Sc: 88.63  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGG...........GtCGCAGGTTCGAGCCCTGCCACTCCTGCCA chr.trna29-TrpCCA Sc: 91.15  



Tyr tRNAs



>>>>>>>...>>>...........<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGGGGAGTGtCCCGAGTGGCaA.AGGGAGCTGACTGTAAATCAGCCGCCTCAT....GGCTtCGCAGGTTCGAGTCCTGC.CTCCCCCACCA chr.trna27-TyrGTA Sc: 74.36  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCACGTAGCTCAGC.GGG.A.GAGCACTACCTTGACATGGTAGGG...........GtCACAGGTTCGATCCCTGTCGTGCCCACCA chr.trna20-ValGAC Sc: 88.00  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCATAGCTCAGC.GGG.A.GAGCGTTCCCTTCACACGGGAGAG...........GtCCAAGGTTCGATCCCTTGTGCGCCCACCA chr.trna40-ValCAC Sc: 81.20  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGGTTAGCTCAGCTGGTtA.GAGCATCTCGTTTACACCGAGAGG...........GtCCGCGGTTCGAATCCGTGACCGCCCACCA chr.trna34-ValTAC Sc: 95.16

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.