tRNAscan-SE Analysis of the Borrelia garinii PBi Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

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chrlinear.trna31 (446598-446525)	Length: 74 bp
Type: Ala	Anticodon: TGC at 35-37 (446564-446562)	Score: 91.03
Seq: GGGGGTTTAGCTCAGTTGGCtAGAGCATCGGCTTTGCAAGCCGAGGGtCAAGGGTTCGAGTCCCTTAACCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna10 (484443-484516)	Length: 74 bp
Type: Arg	Anticodon: GCG at 35-37 (484477-484479)	Score: 72.81
Seq: GTGTCCATAGCTCAGTTGGAtAGAGCGTTAGATTGCGATTCTTAAGGtCGGAGGTTCAAGTCCTCTTGGACACG
Str: >>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna13 (638176-638249)	Length: 74 bp
Type: Arg	Anticodon: TCG at 35-37 (638210-638212)	Score: 69.91
Seq: GCATTCATAGCTCAATTGGAtAGAGCAGTGGACTTCGAATCCGAAGGtTGCAGGTTCGAGTCCTGCTGAGTGCG
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chrlinear.trna22 (791200-791127)	Length: 74 bp
Type: Arg	Anticodon: TCT at 35-37 (791166-791164)	Score: 75.09
Seq: GCATCAATAGCTCAATTGGAtAGAGCAACAGACTTCTAATCTGTAGGtTTTAGGTTCGAGTCCTAATTGGTGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna17 (658879-658950)	Length: 72 bp
Type: Asn	Anticodon: GTT at 33-35 (658911-658913)	Score: 76.04
Seq: TCCCCTATAGCTCAGTGGTAGAGCGGGTGGCTGTTAACCACTAGGtCGGAGGTTCAAGTCCTTCTGGGGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna25 (665077-665004)	Length: 74 bp
Type: Asp	Anticodon: GTC at 35-37 (665043-665041)	Score: 79.20
Seq: GGGGGCGTAGTTCAGATGGTtAGAACGCCTGCCTGTCACGCAGGAGGtCGCGGGTTCGAGACCCGTCGCTCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna2 (202268-202340)	Length: 73 bp
Type: Cys	Anticodon: GCA at 34-36 (202301-202303)	Score: 69.14
Seq: GGCGCTGTACCCAAGTGGCtAAGGGAGAAGTCTGCAAAACTTTGATtCGCCGGTTCGATTCCGGTCAGCGCCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna21 (825030-825101)	Length: 72 bp
Type: Gln	Anticodon: TTG at 33-35 (825062-825064)	Score: 59.77
Seq: TGGGACGTCGACAAGCGGTAAGTCAACTGGTTTTGGTCCAGTCATtCGAGGGTTCGAATCCTTCCGTCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna15 (638415-638486)	Length: 72 bp
Type: Gly	Anticodon: GCC at 33-35 (638447-638449)	Score: 66.76
Seq: GCGAAAGTAACTCAGGGGTAGAGTGTCACCTTGCCAAGGTGGAAGtCGCGGGTTCAAATCCCGTCTTTCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna1 (46379-46450)	Length: 72 bp
Type: Gly	Anticodon: TCC at 34-36 (46412-46414)	Score: 50.44
Seq: GCGTCCTTCGTATAATGGCtATTACCTTAGCCTTCCAAGCTAATGATGTCGGTTCGATTCCGATAGGACGCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna12 (638080-638152)	Length: 73 bp
Type: His	Anticodon: GTG at 34-36 (638113-638115)	Score: 64.57
Seq: GTGGTTGTAGCTCAGTTGGTAGAGCGTCGGGTTGTGGTTCCGAATGtCGCGGGTTCAAGCCCCGTCAATCACC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna7 (444915-444988)	Length: 74 bp
Type: Ile	Anticodon: GAT at 35-37 (444949-444951)	Score: 71.67
Seq: GGGATCATAGCTCAGGTGGTtAGAGCGCAGGTCTGATAAACCTGAGGtCGGATGTTCAACTCATCCTGGTCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna27 (586110-586027)	Length: 84 bp
Type: Leu	Anticodon: CAA at 35-37 (586076-586074)	Score: 65.10
Seq: GCCGGTATGGCGGAATTGGTaGACGCGTCAGACTCAAAATCTGATGAGGGCAACTTCGTGTCGGTTCGACTCCGACTACCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chrlinear.trna6 (255077-255163)	Length: 87 bp
Type: Leu	Anticodon: GAG at 35-37 (255111-255113)	Score: 51.29
Seq: GCTGTGGTGGTGGAAGTGGTaGACACGCTAGCTTGAGGGGCTAGTGGGCGTAAGCCCaTGCTGGTTCAAGTCCAGTTCACAGCATCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....

chrlinear.trna20 (803728-803811)	Length: 84 bp
Type: Leu	Anticodon: TAA at 35-37 (803762-803764)	Score: 65.47
Seq: GCCGAAGTGGTGGAAGTGGTaGACACACAGGACTTAAAATCCTGAGGAGGAAGCTCCGTACCGGTTCAAGTCCGGTCTTCGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.

chrlinear.trna14 (638329-638409)	Length: 81 bp
Type: Leu	Anticodon: TAG at 35-37 (638363-638365)	Score: 53.67
Seq: GCAGGAGTGGTGGAATTGGCaGACACGCTAGACTTAGGATCTAGTGCTTTTGGCGTGTGGGTTCGACTCCCACCTTCTGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<..>>>>>.......<<<<<<<<<<<<.

chrlinear.trna28 (549950-549878)	Length: 73 bp
Type: Lys	Anticodon: CTT at 34-36 (549917-549915)	Score: 70.67
Seq: GGGCTGCTAGCTCAAGTGGTAGAGCATCGGACTCTTAATCCGTTGGtTACAGGTTCAAGTCCTGTGCAGCTCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chrlinear.trna29 (549767-549695)	Length: 73 bp
Type: Lys	Anticodon: TTT at 34-36 (549734-549732)	Score: 77.18
Seq: GGGCTCATAGCTCAGGTGGTAGAGCAGCGCCCTTTTAAGGCGTTTGtCGTAGGTTCGAGTCCTACTGAGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna26 (645152-645080)	Length: 73 bp
Type: Met	Anticodon: CAT at 34-36 (645119-645117)	Score: 80.18
Seq: CGCAGGGTAGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGtCATAGGTTCGAGTCCTATCCCTGCTA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..

chrlinear.trna16 (650409-650482)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (650443-650445)	Score: 82.28
Seq: GCTGATGTAGCTCAGTTGGTtAGAGCACTCGGCTCATATCCGAGTTGtCGTGGGTTCAAGTCCCTCCATCAGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.

chrlinear.trna5 (217290-217363)	Length: 74 bp
Type: Met	Anticodon: CAT at 35-37 (217324-217326)	Score: 88.53
Seq: GGGCCCATAGCTCAGTTGGTtAGAGCACCCGACTCATAATCGGTAGGtCCCAGGTTCAAGTCCTGGTGGGCCCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chrlinear.trna4 (206023-206095)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (206056-206058)	Score: 77.30
Seq: GTCGCTGTAGCTCAGTTGGTAGAGCATAGGACTGAAAATCCTTGTGtCAGGAGTTCGATTCTCCTCGGCGACA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chrlinear.trna3 (205930-206002)	Length: 73 bp
Type: Phe	Anticodon: GAA at 34-36 (205963-205965)	Score: 78.84
Seq: GCTGCTGTAGCTCAGTTGGTAGAGCATAGGACTGAAAATCCTTGTGtCAGGAGTTCGATTCTCCTCGGCAGCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.

chrlinear.trna23 (791119-791047)	Length: 73 bp
Type: Pro	Anticodon: TGG at 34-36 (791086-791084)	Score: 68.55
Seq: CGGGATGTGGCCTAGTGGCtAAGGCACCTGCTTTGGGAGCAGGGGAtCGTGAGTTCGAATCCCACCATCCCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<.

chrlinear.trna30 (549689-549618)	Length: 72 bp
Type: Glu	Anticodon: TTC at 34-36 (549656-549654)	Score: 36.94
Seq: GTCCTCTTCGTCTATCGGTtAGGACTCCAGGTTTTCATCCTGGCAAGAGGGGTTCGATTCCCCTAGAGGATG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna8 (483406-483494)	Length: 89 bp
Type: Ser	Anticodon: GCT at 35-37 (483440-483442)	Score: 51.84
Seq: GGAGAGATGCCAGAGTGGCcgAATGGGGCTTCCTGCTAAGAAGTTGTCCTTTTGAAAGGGGACCATGGGTTCGAATCCCATTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>....<<<<<<<.>>>>>.......<<<<<<<<<<<<.

chrlinear.trna11 (484533-484619)	Length: 87 bp
Type: Ser	Anticodon: GGA at 35-37 (484567-484569)	Score: 68.51
Seq: GGAGAGATGGCCGAGTGGCttAAGGCGCACGCTTGGAAAGCGTGTATACGGTAAAATGTATCATGGGTTCGAATCCCATTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>......<<<<<.>>>>>.......<<<<<<<<<<<<.

chrlinear.trna9 (483551-483637)	Length: 87 bp
Type: Ser	Anticodon: TGA at 35-37 (483585-483587)	Score: 67.23
Seq: GGAGAGGTGGCAGAGTGGTttAATGCTACGGTCTTGAAAACCGTTGTAGGTGTAAGCCTACCGTGAGTTCGAATCTCACCCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.

chrlinear.trna32 (409127-409055)	Length: 73 bp
Type: Thr	Anticodon: GGT at 34-36 (409094-409092)	Score: 78.49
Seq: GCCCTTATAGCTCAGTTGGTAGAGCACCACCATGGTAAGGTGGGGGtCGTCGGTTCAAGTCCGATTGAGGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna18 (746829-746902)	Length: 74 bp
Type: Thr	Anticodon: TGT at 35-37 (746863-746865)	Score: 80.38
Seq: GCCGACTTAGCTCAGCTGGCcAGAGCAGCGGTCTTGTAAACCGCAGGtCGTCGGTTCGACTCCGACAGTCGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna33 (408839-408767)	Length: 73 bp
Type: Trp	Anticodon: CCA at 34-36 (408806-408804)	Score: 58.17
Seq: AGGTCAGTAGTTCCAACGGTAGAACGACAGTCTCCAAAACTGTATGcTGGGGGTTCGAATCCCTCCTGACCTG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

chrlinear.trna19 (746907-746988)	Length: 82 bp
Type: Tyr	Anticodon: GTA at 35-37 (746941-746943)	Score: 57.25
Seq: GGGGCGGTACCGAAGTGGTtaACCGGGGCAGACTGTAAATCTGTTGGCTTTGCCTaCGTGGGTTCGAATCCCACCCTCCCCA
Str: >>>>.>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<.<<<<.

chrlinear.trna24 (732507-732434)	Length: 74 bp
Type: Val	Anticodon: TAC at 35-37 (732473-732471)	Score: 85.81
Seq: GGGCTCATAGCTCAGTTGGTcAGAGCGCCTGCCTTACAAGCAGGATGtCGGGAGTTCGAATCTCTCTGGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.