tRNAscan-SE Analysis of the Borrelia garinii PBi Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chrlinear	31	446598	446525	Ala	TGC	0	0	91.03	73.08	17.95	Both

chrlinear	10	484443	484516	Arg	GCG	0	0	72.81	50.20	22.61	Both

chrlinear	13	638176	638249	Arg	TCG	0	0	69.91	55.88	14.03	Both

chrlinear	22	791200	791127	Arg	TCT	0	0	75.09	48.53	26.56	Both

chrlinear	17	658879	658950	Asn	GTT	0	0	76.04	53.22	22.82	Both

chrlinear	25	665077	665004	Asp	GTC	0	0	79.20	63.73	15.47	Both

chrlinear	2	202268	202340	Cys	GCA	0	0	69.14	41.04	28.10	Both

chrlinear	21	825030	825101	Gln	TTG	0	0	59.77	32.23	27.54	Both

chrlinear	15	638415	638486	Gly	GCC	0	0	66.76	43.45	23.31	Both

chrlinear	1	46379	46450	Gly	TCC	0	0	50.44	17.53	32.91	Eufind

chrlinear	12	638080	638152	His	GTG	0	0	64.57	47.96	16.61	Both

chrlinear	7	444915	444988	Ile	GAT	0	0	71.67	40.81	30.86	Both

chrlinear	27	586110	586027	Leu	CAA	0	0	65.10	33.16	31.94	Both

chrlinear	6	255077	255163	Leu	GAG	0	0	51.29	18.27	33.02	Both

chrlinear	20	803728	803811	Leu	TAA	0	0	65.47	34.53	30.94	Both

chrlinear	14	638329	638409	Leu	TAG	0	0	53.67	29.95	23.72	Both

chrlinear	28	549950	549878	Lys	CTT	0	0	70.67	49.81	20.86	Both

chrlinear	29	549767	549695	Lys	TTT	0	0	77.18	54.26	22.92	Both

chrlinear	26	645152	645080	Met	CAT	0	0	80.18	51.62	28.56	Both
chrlinear	16	650409	650482	Met	CAT	0	0	82.28	63.39	18.89	Both
chrlinear	5	217290	217363	Met	CAT	0	0	88.53	70.98	17.55	Both

chrlinear	4	206023	206095	Phe	GAA	0	0	77.30	57.16	20.14	Both
chrlinear	3	205930	206002	Phe	GAA	0	0	78.84	60.05	18.79	Both

chrlinear	23	791119	791047	Pro	TGG	0	0	68.55	50.13	18.42	Both

chrlinear	30	549689	549618	Pseudo	TTC	0	0	36.94	7.07	29.87	Eufind

chrlinear	8	483406	483494	Ser	GCT	0	0	51.84	11.42	40.42	Both

chrlinear	11	484533	484619	Ser	GGA	0	0	68.51	39.62	28.89	Both

chrlinear	9	483551	483637	Ser	TGA	0	0	67.23	28.32	38.91	Both

chrlinear	32	409127	409055	Thr	GGT	0	0	78.49	55.94	22.55	Both

chrlinear	18	746829	746902	Thr	TGT	0	0	80.38	54.98	25.40	Both

chrlinear	33	408839	408767	Trp	CCA	0	0	58.17	31.13	27.04	Both

chrlinear	19	746907	746988	Tyr	GTA	0	0	57.25	33.54	23.71	Eufind

chrlinear	24	732507	732434	Val	TAC	0	0	85.81	67.38	18.43	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.