tRNAscan-SE Analysis of the Borrelia garinii PBi Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTTTAGCTCAGTTGGCtAGAGCATCGGCTTTGCAAGCCGAGG...........GtCAAGGGTTCGAGTCCCTTAACCTCCA... chrlinear.trna31-AlaTGC Sc: 91.03  



Arg tRNAs



>>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<....
GTGTCCATAGCTCAGTTGGAtAGAGCGTTAGATTGCGATTCTTAAG...........GtCGGAGGTTCAAGTCCTCTTGGACACG... chrlinear.trna10-ArgGCG Sc: 72.81  


>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCATTCATAGCTCAATTGGAtAGAGCAGTGGACTTCGAATCCGAAG...........GtTGCAGGTTCGAGTCCTGCTGAGTGCG... chrlinear.trna13-ArgTCG Sc: 69.91  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCATCAATAGCTCAATTGGAtAGAGCAACAGACTTCTAATCTGTAG...........GtTTTAGGTTCGAGTCCTAATTGGTGCG... chrlinear.trna22-ArgTCT Sc: 75.09  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCTATAGCTCAGTGGTA.GAGCGGGTGGCTGTTAACCACTAG...........GtCGGAGGTTCAAGTCCTTCTGGGGGAG... chrlinear.trna17-AsnGTT Sc: 76.04  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGCGTAGTTCAGATGGTtAGAACGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGACCCGTCGCTCCCG... chrlinear.trna25-AspGTC Sc: 79.20  



Cys tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGCTGTACCCAAGTGGCtA.AGGGAGAAGTCTGCAAAACTTTGA...........TtCGCCGGTTCGATTCCGGTCAGCGCCT... chrlinear.trna2-CysGCA Sc: 69.14  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGACGTCGACAAGCGGTA.AGTCAACTGGTTTTGGTCCAGTCA...........TtCGAGGGTTCGAATCCTTCCGTCCCAG... chrlinear.trna21-GlnTTG Sc: 59.77  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCTCTTCGTCTATCGGTtA.GGACTCCAGGTTTTCATCCTGGCA...........AGAGGGGTTCGATTCCCCTAGAGGATG... chrlinear.trna30-GluTTC Sc: 36.94  Pseudo



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAAAGTAACTCAGGGGT.A.GAGTGTCACCTTGCCAAGGTGGAA...........GtCGCGGGTTCAAATCCCGTCTTTCGCT... chrlinear.trna15-GlyGCC Sc: 66.76  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTCCTTCGTATAATGGCtA.TTACCTTAGCCTTCCAAGCTAATG...........A.TGTCGGTTCGATTCCGATAGGACGCT... chrlinear.trna1-GlyTCC Sc: 50.44  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGTTGTAGCTCAGTTGGTAGAGCGTCGGGTTGTGGTTCCGAAT...........GtCGCGGGTTCAAGCCCCGTCAATCACC... chrlinear.trna12-HisGTG Sc: 64.57  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGATCATAGCTCAGGTGGTtAGAGCGCAGGTCTGATAAACCTGAG...........GtCGGATGTTCAACTCATCCTGGTCCCA... chrlinear.trna7-IleGAT Sc: 71.67  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCTGTGGTGGTGGAAGTGGTaGACACGCTAGCTTGAGGGGCTAGTGGGC.GTAA....GCCCaTGCTGGTTCAAGTCCAGT.TCACAGCATCA chrlinear.trna6-LeuGAG Sc: 51.29  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<...>>>>>.......<<<<<.<<<<<<<....
GCAGGAGTGGTGGAATTGGCaGACACGCTAGACTTAGGATCTAGT.GCT.TTT.....GGCG.TGTGGGTTCGACTCCCAC.CTTCTGTA... chrlinear.trna14-LeuTAG Sc: 53.67  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGGTATGGCGGAATTGGTaGACGCGTCAGACTCAAAATCTGAT.GAGGGCAA...CTTCG.TGTCGGTTCGACTCCGAC.TACCGGTA... chrlinear.trna27-LeuCAA Sc: 65.10  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGTGGAAGTGGTaGACACACAGGACTTAAAATCCTGA.GGAGGAAG...CTCCG.TACCGGTTCAAGTCCGGT.CTTCGGTA... chrlinear.trna20-LeuTAA Sc: 65.47  



Lys tRNAs


>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCTGCTAGCTCAAGTGGTAGAGCATCGGACTCTTAATCCGTTG...........GtTACAGGTTCAAGTCCTGTGCAGCTCA... chrlinear.trna28-LysCTT Sc: 70.67  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCATAGCTCAGGTGGTAGAGCAGCGCCCTTTTAAGGCGTTT...........GtCGTAGGTTCGAGTCCTACTGAGCTCA... chrlinear.trna29-LysTTT Sc: 77.18  



Met tRNAs


>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCCATAGCTCAGTTGGTtAGAGCACCCGACTCATAATCGGTAG...........GtCCCAGGTTCAAGTCCTGGTGGGCCCA... chrlinear.trna5-MetCAT Sc: 88.53  
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GCTGATGTAGCTCAGTTGGTtAGAGCACTCGGCTCATATCCGAGTT...........GtCGTGGGTTCAAGTCCCTCCATCAGCA... chrlinear.trna16-MetCAT Sc: 82.28  
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCAGGGTAGAGCAGTTGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCATAGGTTCGAGTCCTATCCCTGCTA... chrlinear.trna26-MetCAT Sc: 80.18  



Phe tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCTGCTGTAGCTCAGTTGGTAGAGCATAGGACTGAAAATCCTTGT...........GtCAGGAGTTCGATTCTCCTCGGCAGCA... chrlinear.trna3-PheGAA Sc: 78.84  
GTCGCTGTAGCTCAGTTGGTAGAGCATAGGACTGAAAATCCTTGT...........GtCAGGAGTTCGATTCTCCTCGGCGACA... chrlinear.trna4-PheGAA Sc: 77.30  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
CGGGATGTGGCCTAGTGGCtA.AGGCACCTGCTTTGGGAGCAGGGG...........AtCGTGAGTTCGAATCCCACCATCCCGA... chrlinear.trna23-ProTGG Sc: 68.55  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>........<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGTGGCttA.AGGCGCACGCTTGGAAAGCGTGTATACGG.TAAA.ATGTATCATGGGTTCGAATCCCAT..TCTCTCCG... chrlinear.trna11-SerGGA Sc: 68.51  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTttA.ATGCTACGGTCTTGAAAACCGTTGTAGGT.GTAA.GCCTACCGTGAGTTCGAATCTCAC..CCTCTCCG... chrlinear.trna9-SerTGA Sc: 67.23  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGCCAGAGTGGCcgA.ATGGGGCTTCCTGCTAAGAAGTTGTCCTTTTGAAAGGGGACCATGGGTTCGAATCCCAT..TCTCTCCG... chrlinear.trna8-SerGCT Sc: 51.84  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCTTATAGCTCAGTTGGT.AGAGCACCACCATGGTAAGGTGGGG...........GtCGTCGGTTCAAGTCCGATTGAGGGCT... chrlinear.trna32-ThrGGT Sc: 78.49  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGACTTAGCTCAGCTGGCcAGAGCAGCGGTCTTGTAAACCGCAG...........GtCGTCGGTTCGACTCCGACAGTCGGCT... chrlinear.trna18-ThrTGT Sc: 80.38  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGTCAGTAGTTCCAACGGTAGAACGACAGTCTCCAAAACTGTAT...........GcTGGGGGTTCGAATCCCTCCTGACCTG... chrlinear.trna33-TrpCCA Sc: 58.17  



Tyr tRNAs



>>>>.>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<.<<<<....
GGGGCGGTACCGAAGTGGTtaA.CCGGGGCAGACTGTAAATCTGTTGGCTTT.....GCCTaCGTGGGTTCGAATCCCAC.CCTCCCCA... chrlinear.trna19-TyrGTA Sc: 57.25  



Val tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCATAGCTCAGTTGGTcAGAGCGCCTGCCTTACAAGCAGGAT...........GtCGGGAGTTCGAATCTCTCTGGGCCCA... chrlinear.trna24-ValTAC Sc: 85.81

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.