tRNAscan-SE Analysis of the Borrelia burgdorferi Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

plain text version

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	46530	46601	View	Gly	TCC	0	0	50.44	17.53	32.91	Eufind
chr	2	202693	202765	View	Cys	GCA	0	0	69.14	41.04	28.10	Both
chr	3	206333	206405	View	Phe	GAA	0	0	78.84	60.05	18.79	Both
chr	4	206428	206500	View	Phe	GAA	0	0	77.30	57.16	20.14	Both
chr	5	218340	218413	View	Met	CAT	0	0	88.53	70.98	17.55	Both
chr	6	256281	256367	View	Leu	GAG	0	0	53.09	20.19	32.90	Both
chr	7	443623	443696	View	Ile	GAT	0	0	71.67	40.81	30.86	Both
chr	8	481083	481171	View	Ser	GCT	0	0	54.54	14.80	39.74	Both
chr	9	481228	481314	View	Ser	TGA	0	0	67.23	28.32	38.91	Both
chr	10	482132	482205	View	Arg	GCG	0	0	72.81	50.20	22.61	Both
chr	11	482222	482308	View	Ser	GGA	0	0	68.51	37.71	30.80	Both
chr	12	636144	636216	View	His	GTG	0	0	64.57	47.96	16.61	Both
chr	13	636241	636314	View	Arg	TCG	0	0	71.59	53.29	18.30	Both
chr	14	636395	636475	View	Leu	TAG	0	0	53.74	28.20	25.54	Both
chr	15	636481	636552	View	Gly	GCC	0	0	66.76	43.45	23.31	Both
chr	16	648466	648539	View	Met	CAT	0	0	82.28	63.39	18.89	Both
chr	17	656945	657016	View	Asn	GTT	0	0	76.04	53.22	22.82	Both
chr	18	744933	745006	View	Thr	TGT	0	0	69.32	43.30	26.02	Eufind
chr	19	745012	745093	View	Tyr	GTA	0	0	57.25	33.54	23.71	Eufind
chr	20	801846	801928	View	Leu	TAA	0	0	70.56	38.43	32.13	Both
chr	21	823168	823239	View	Gln	TTG	0	0	60.62	33.09	27.53	Both
chr	22	789200	789127	View	Arg	TCT	0	0	78.73	49.76	28.97	Both
chr	23	789119	789047	View	Pro	TGG	0	0	68.55	50.13	18.42	Both
chr	24	730588	730515	View	Val	TAC	0	0	85.81	67.38	18.43	Both
chr	25	663140	663067	View	Asp	GTC	0	0	78.88	63.41	15.47	Both
chr	26	643227	643155	View	Met	CAT	0	0	80.18	51.62	28.56	Both
chr	27	584182	584099	View	Leu	CAA	0	0	63.46	32.80	30.66	Both
chr	28	547797	547725	View	Lys	CTT	0	0	70.67	48.33	22.34	Both
chr	29	547617	547545	View	Lys	TTT	0	0	77.18	54.26	22.92	Both
chr	30	547539	547468	View	Pseudo	TTC	0	0	36.94	7.07	29.87	Eufind
chr	31	444409	444336	View	Ala	TGC	0	0	91.03	73.08	17.95	Both
chr	32	408480	408408	View	Thr	GGT	0	0	78.49	55.94	22.55	Both
chr	33	408192	408120	View	Trp	CCA	0	0	58.17	31.13	27.04	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.