tRNAscan-SE Analysis of the Borrelia burgdorferi Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTTTAGCTCAGTTGGCtAGAGCATCGGCTTTGCAAGCCGAGG...........GtCAAGGGTTCGAGTCCCTTAACCTCCA... chr.trna31-AlaTGC Sc: 91.03  



Arg tRNAs



>>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<....
GTGTCCATAGCTCAGTTGGAtAGAGCGTTAGATTGCGATTCTTAAG...........GtCGGAGGTTCAAGTCCTCTTGGACACG... chr.trna10-ArgGCG Sc: 72.81  


>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCATTCATAGCTCAATTGGAtAGAGCGGCGGACTTCGAATCCGAAG...........GtTGCAGGTTCGACTCCTGCTGAGTGCG... chr.trna13-ArgTCG Sc: 71.59  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCAATAGCTCAATTGGAtAGAGCAACAGACTTCTAATCTGTAG...........GtTTTAGGTTCGAGTCCTAATTGGTGCG... chr.trna22-ArgTCT Sc: 78.73  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCTATAGCTCAGTGGTA.GAGCGGGTGGCTGTTAACCACTAG...........GtCGGAGGTTCAAGTCCTTCTGGGGGAG... chr.trna17-AsnGTT Sc: 76.04  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGCGTAGTTCAGGTGGTtAGAACGCCTGCCTGTCACGCAGGAG...........GtCGCGGGTTCGAGACCCGTCGCTCCCG... chr.trna25-AspGTC Sc: 78.88  



Cys tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGCTGTACCCAAGTGGCtA.AGGGAGAAGTCTGCAAAACTTTGA...........TtCGCCGGTTCGATTCCGGTCAGCGCCT... chr.trna2-CysGCA Sc: 69.14  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGACGTCGACAAGTGGTA.AGTCAACTGGTTTTGGTCCAGTCA...........TtCGAGGGTTCGAATCCTTCCGTCCCAG... chr.trna21-GlnTTG Sc: 60.62  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCTCTTCGTCTATCGGTtA.GGACTCCAGGTTTTCATCCTGGCA...........AGAGGGGTTCGATTCCCCTAGAGGATG... chr.trna30-GluTTC Sc: 36.94  Pseudo



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGAAAGTAACTCAGGGGT.A.GAGTGTCACCTTGCCAAGGTGGAA...........GtCGCGGGTTCAAATCCCGTCTTTCGCT... chr.trna15-GlyGCC Sc: 66.76  


>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTCCTTCGTATAATGGCtA.TTACCTTAGCCTTCCAAGCTAATG...........A.TGTCGGTTCGATTCCGATAGGACGCT... chr.trna1-GlyTCC Sc: 50.44  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGTTGTAGCTCAGTTGGTAGAGCGTCGGGTTGTGGTTCCGAAT...........GtCGCGGGTTCAAGCCCCGTCAATCACC... chr.trna12-HisGTG Sc: 64.57  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGATCATAGCTCAGGTGGTtAGAGCGCAGGTCTGATAAACCTGAG...........GtCGGATGTTCAACTCATCCTGGTCCCA... chr.trna7-IleGAT Sc: 71.67  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCTGTGGTGGTGGAAGTGGTaGACACGCTAGCTTGAGGGGCTAGT.GGGCGCAA...GCCCGTGCTGGTTCAAGTCCAGT.TCACAGCATCA chr.trna6-LeuGAG Sc: 53.09  


.>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<..>>>>>.......<<<<<.<<<<<<.....
CCAGGAGTGGTGGAATTGGCaGACACGCTAGACTTAGGATCTAGT.GCC.TTT.....GGCGTGTGGGTTCGACTCCCAC.CTTCTGTA... chr.trna14-LeuTAG Sc: 53.74  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.......<<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGGTATGGCGGAATTGGTaGACGCGCCAGACTCAAAATCTGGT.GAGGGCAA...CTTCATGTCGGTTCGACTCCGAC.TACCGGTA... chr.trna27-LeuCAA Sc: 63.46  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGTGGAATTGGTaGACACACAGGACTTAAAATCCTGAGGAG.GAAG....CTCGTACCGGTTCAAGTCCGGT.CTTCGGTA... chr.trna20-LeuTAA Sc: 70.56  



Lys tRNAs


>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCTGCTAGCTCAAGTGGTAGAGCATCGGACTCTTAATCCGCTG...........GtTACAGGTTCAAGTCCTGTGCAGCTCA... chr.trna28-LysCTT Sc: 70.67  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCATAGCTCAGGTGGTAGAGCAGCGCCCTTTTAAGGCGTTT...........GtCGTAGGTTCGAGTCCTACTGAGCTCA... chr.trna29-LysTTT Sc: 77.18  



Met tRNAs


>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGGCCCATAGCTCAGTTGGTtAGAGCACCCGACTCATAATCGGTAG...........GtCCCAGGTTCAAGTCCTGGTGGGCCCA... chr.trna5-MetCAT Sc: 88.53  
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GCTGATGTAGCTCAGTTGGTtAGAGCACTCGGCTCATATCCGAGTT...........GtCGTGGGTTCAAGTCCCTCCATCAGCA... chr.trna16-MetCAT Sc: 82.28  
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCAGGGTAGAGCAGTTGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCATAGGTTCGAGTCCTATCCCTGCTA... chr.trna26-MetCAT Sc: 80.18  



Phe tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCTGCTGTAGCTCAGTTGGTAGAGCATAGGACTGAAAATCCTTGT...........GtCAGGAGTTCGATTCTCCTCGGCAGCA... chr.trna3-PheGAA Sc: 78.84  
GTCGCTGTAGCTCAGTTGGTAGAGCATAGGACTGAAAATCCTTGT...........GtCAGGAGTTCGATTCTCCTCGGCGACA... chr.trna4-PheGAA Sc: 77.30  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
CGGGATGTGGCCTAGTGGCtA.AGGCACCTGCTTTGGGAGCAGGGG...........AtCGTGAGTTCGAATCCCACCATCCCGA... chr.trna23-ProTGG Sc: 68.55  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>........<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCCGAGTGGCttA.AGGCGCACGCTTGGAAAGCGTGTATACAG.TAAA.ATGTATCATGGGTTCGAATCCCAT..TCTCTCCG... chr.trna11-SerGGA Sc: 68.51  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTttA.ATGCTACGGTCTTGAAAACCGTTGTAGGT.GTAA.GCCTACCGTGAGTTCGAATCTCAC..CCTCTCCG... chr.trna9-SerTGA Sc: 67.23  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>>....<<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGCCAGAGTGGCcgA.ATGGGGCTTCCTGCTAAGAAGTTGTCCTTTTAAAAGGGGACCATGGGTTCGAATCCCAT..TCTCTCCG... chr.trna8-SerGCT Sc: 54.54  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>.>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCCCTTATAGCTCAGTTGGT.AGAGCACC.ACCATGGTAAGGTGGGG...........GtCGTCGGTTCAAGTCCGAT.TGAGGGCT... chr.trna32-ThrGGT Sc: 78.49  


>>>>>>>..>>>>.........<<<<.>>.>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCCGACTTAGCTCAGCTGGCcAGAGCAGCgGGTCTTGTAAACCGCA............GtCGTCGGTTCGAATCCGAC.AGTCGGCT... chr.trna18-ThrTGT Sc: 69.32  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGTCAGTAGTTCCAACGGTAGAACGACAGTCTCCAAAACTGTAT...........GcTGGGGGTTCGAATCCCTCCTGACCTG... chr.trna33-TrpCCA Sc: 58.17  



Tyr tRNAs



>>>>.>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<.<<<<....
GGGGCGGTACCGAAGTGGTtaA.CCGGGGCAGACTGTAAATCTGTTGGCTTT.....GCCTaCGTGGGTTCGAATCCCAC.CCTCCCCA... chr.trna19-TyrGTA Sc: 57.25  



Val tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTCATAGCTCAGTTGGTcAGAGCGCCTGCCTTACAAGCAGGAT...........GtCGGGAGTTCGAATCTCTCTGGGCCCA... chr.trna24-ValTAC Sc: 85.81

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.