tRNAscan-SE Analysis of the Bordetella pertussis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	16	2235156	2235231	Ala	CGC	0	0	84.28	68.33	15.95	Both

chr	44	1078235	1078160	Ala	GGC	0	0	86.46	68.18	18.28	Both

chr	15	2150769	2150844	Ala	TGC	0	0	88.49	76.35	12.14	Both
chr	33	3237030	3236955	Ala	TGC	0	0	88.49	76.35	12.14	Both
chr	37	2445478	2445403	Ala	TGC	0	0	88.49	76.35	12.14	Both

chr	12	2033259	2033335	Arg	ACG	0	0	86.25	70.42	15.83	Both
chr	13	2048459	2048535	Arg	ACG	0	0	86.25	70.42	15.83	Both

chr	21	3531905	3531979	Arg	CCG	0	0	66.19	44.21	21.98	Both

chr	40	1618901	1618827	Arg	CCT	0	0	58.52	23.56	34.96	Both

chr	7	916416	916492	Arg	TCT	0	0	90.16	61.32	28.84	Both

chr	24	3999800	3999875	Asn	GTT	0	0	87.19	65.32	21.87	Both
chr	8	1301250	1301325	Asn	GTT	0	0	87.19	65.32	21.87	Both

chr	46	1078017	1077941	Asp	GTC	0	0	95.07	76.58	18.49	Both

chr	29	3659534	3659461	Cys	GCA	0	0	68.57	45.54	23.03	Both

chr	31	3330593	3330517	Gln	TTG	0	0	77.70	53.26	24.44	Both

chr	45	1078128	1078053	Glu	TTC	0	0	60.10	29.80	30.30	Both

chr	23	3905567	3905640	Gly	CCC	0	0	77.64	61.59	16.05	Both

chr	18	2659402	2659477	Gly	GCC	0	0	88.26	64.10	24.16	Both
chr	28	3659670	3659595	Gly	GCC	0	0	88.26	64.10	24.16	Both

chr	2	6511	6584	Gly	TCC	0	0	82.17	64.72	17.45	Both

chr	38	2351145	2351070	His	GTG	0	0	82.63	61.86	20.77	Both

chr	14	2150672	2150748	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr	32	3237127	3237051	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr	36	2445575	2445499	Ile	GAT	0	0	93.29	71.17	22.12	Both

chr	51	71475	71391	Leu	CAA	0	0	75.82	48.70	27.12	Both

chr	25	3736125	3736041	Leu	CAG	0	0	75.85	48.45	27.40	Both
chr	26	3735180	3735096	Leu	CAG	0	0	75.85	48.45	27.40	Both

chr	6	825583	825667	Leu	GAG	0	0	63.68	32.34	31.34	Both

chr	47	822707	822623	Leu	TAA	0	0	79.53	45.12	34.41	Both

chr	10	1857742	1857828	Leu	TAG	0	0	68.96	49.50	19.46	Both

chr	20	3018642	3018717	Lys	CTT	0	0	88.69	59.55	29.14	Both

chr	19	2996473	2996548	Lys	TTT	0	0	94.70	68.37	26.33	Both

chr	39	2302444	2302366	Met	CAT	0	0	66.21	42.44	23.77	tRNAscan
chr	27	3723518	3723442	Met	CAT	0	0	81.73	54.35	27.38	Both
chr	35	2719407	2719331	Met	CAT	0	0	85.01	60.51	24.50	Both
chr	41	1305530	1305454	Met	CAT	0	0	85.01	60.51	24.50	Both

chr	48	692900	692825	Phe	GAA	0	0	86.41	66.60	19.81	Both

chr	5	764870	764946	Pro	CGG	0	0	84.17	60.95	23.22	Both

chr	34	2723460	2723384	Pro	GGG	0	0	77.19	62.79	14.40	Both

chr	43	1114493	1114417	Pro	TGG	0	0	87.76	70.08	17.68	Both

chr	17	2597285	2597374	Ser	CGA	0	0	77.54	45.79	31.75	Both

chr	11	2017236	2017328	Ser	GCT	0	0	69.50	38.56	30.94	Both

chr	30	3386736	3386646	Ser	GGA	0	0	75.09	49.40	25.69	Both

chr	42	1301077	1301002	Thr	CGT	0	0	90.68	74.97	15.71	Both

chr	3	6591	6665	Thr	GGT	0	0	86.85	57.28	29.57	Both

chr	50	279277	279202	Thr	TGT	0	0	95.16	80.06	15.10	Both

chr	4	8023	8098	Trp	CCA	0	0	85.26	62.65	22.61	Both

chr	1	6236	6322	Tyr	GTA	0	0	72.20	40.65	31.55	Both

chr	49	405714	405640	Val	CAC	0	0	85.38	59.29	26.09	Both

chr	9	1569314	1569390	Val	GAC	0	0	88.50	60.58	27.92	Both

chr	22	3742518	3742593	Val	TAC	0	0	92.08	70.25	21.83	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.