tRNAscan-SE Analysis of the Bordetella pertussis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chr.trna44-AlaGGC Sc: 86.46  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAG...........GtCGGGAGTTCGATCCTCCTCCGCTCCACCA chr.trna16-AlaCGC Sc: 84.28  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCATCGGTTCGATCCCGTTCACCTCCACCA chr.trna37-AlaTGC Sc: 88.49  
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCATCGGTTCGATCCCGTTCACCTCCACCA chr.trna33-AlaTGC Sc: 88.49  
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCATCGGTTCGATCCCGTTCACCTCCACCA chr.trna15-AlaTGC Sc: 88.49  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGCCCGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGC.CGGGCGCGCCA chr.trna13-ArgACG Sc: 86.25  
GCGCCCGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGC.CGGGCGCGCCA chr.trna12-ArgACG Sc: 86.25  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGCCCGTAGTTCAAT.GGAtA.GAATGAGAGTTTCCGAAGCTCTTG...........A.TACAGGTTCGATTCCTGT.CGGGCGCGCCA chr.trna21-ArgCCG Sc: 66.19  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
CTCGCCGTAGTTAAAT.GGAtA.TAACCGGCCCCTCCTAAGGGTCA............AtTGGTGGTTCGATTCCACC.CGGCGAGGCCA chr.trna40-ArgCCT Sc: 58.52  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
CCGCCCTTAGCTCAGTTGGAtA.GAGCACAGGTCTTCTAAACCTGGG...........GtCACAAGTTCGAATCTTGT.AGGGCGGGCCA chr.trna7-ArgTCT Sc: 90.16  



Asn tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCTCGGGGAGCCA chr.trna8-AsnGTT Sc: 87.19  
TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCTCGGGGAGCCA chr.trna24-AsnGTT Sc: 87.19  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCGCTCCGCCA chr.trna46-AspGTC Sc: 95.07  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGCAATGGCAGAGTGGTT.ATGCAGCGGATTGCAAATCCGTGT...........ACGTCGGTTCGATTCCGGCTTGCGCCTCCA chr.trna29-CysGCA Sc: 68.57  



Gln tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGAGTCGCCAAGCTGGTtAAGGCACCGGATTTTGATTCCGGCA...........TgCGAAGGTTCGAATCCTTCCTCCCCAGCCA chr.trna31-GlnTTG Sc: 77.70  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna45-GluTTC Sc: 60.10  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTTTCCCGCTCCA chr.trna28-GlyGCC Sc: 88.26  
GCGGGAATAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTTTCCCGCTCCA chr.trna18-GlyGCC Sc: 88.26  

>>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGTTCAAT.GGTA.GAACGGCGGCTTCCCAAGCCTCAA...........G.CGTGGGTTCGATTCCCATCACCCGCTCCA chr.trna23-GlyCCC Sc: 77.64  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAAT.GGTA.GAGCAGAAGCCTTCCAAGCTTACG...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA chr.trna2-GlyTCC Sc: 82.17  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCGAGTCCCATCAGCCACCCCA chr.trna38-HisGTG Sc: 82.63  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr.trna36-IleGAT Sc: 93.29  
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr.trna32-IleGAT Sc: 93.29  
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr.trna14-IleGAT Sc: 93.29  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGC.GAAA....GCTGTGCGAGTTCGAGTCTCGC.CGTCGGCACCA chr.trna6-LeuGAG Sc: 63.68  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCC.GCAA....GGTGTGGAGGTTCGAGTCCTCT.CCTGGGCACCA chr.trna26-LeuCAG Sc: 75.85  
GCCCAGGTGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCC.GCAA....GGTGTGGAGGTTCGAGTCCTCT.CCTGGGCACCA chr.trna25-LeuCAG Sc: 75.85  

>>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAAGGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGACGCCGTAAC...AGGTGTGCGGGTTCGAGTCCCGC.CCTTCGCACCA chr.trna10-LeuTAG Sc: 68.96  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGTGAAATTGGTaGACGCAGGGGACTCAAAATCCCCCGCC.GCAA....GGCGTGCCGGTTCGATTCCGGC.CCCGGGCACCA chr.trna51-LeuCAA Sc: 75.82  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCACCCATGGCGAAATTGGTaGACGCAAGGGACTTAAAATCCCTCGCC.GCAA....GGCGTCCCGGTTCGATTCCGGG.TGGGTGCACCA chr.trna47-LeuTAA Sc: 79.53  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAG...........GtCGAGTGTTCGAGCCACTCACAGCCCACCA chr.trna20-LysCTT Sc: 88.69  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGCGCGTTCGAGTCGCGCACGACCCACCA chr.trna19-LysTTT Sc: 94.70  



Met tRNAs


.>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCA.GTCtGGC.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAACCA chr.trna41-MetCAT Sc: 85.01  
CGCGGGGTGGAGCA.GTCtGGC.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAACCA chr.trna35-MetCAT Sc: 85.01  
>>>>>>>..>>>>...........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGCGCATTAGCTCA.GCC.GGTtAGAGCGACGGAATCATAATCCGCAG...........GtCCCCTGTTCGAATCAGGGATGCGCCACCA chr.trna27-MetCAT Sc: 81.73  
>>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTCTAGCTCAtGCCtGGTtAGAGCAGCGGACTCATAATCCGTTG...........GtGCCGAGTTCGACTCTCGGGGGGCCTACCA chr.trna39-MetCAT Sc: 66.21  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCTGGTAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTTGT...........GtCGGTGGTTCGATTCCGCCCCAGGCCACCA chr.trna48-PheGAA Sc: 86.41  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGG...........GtCGCGAGTTCGAATCCCGCCGTCCCGACCA chr.trna34-ProGGG Sc: 77.19  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCTCAGCCtGGTAGAGTACTGCGTTCGGGACGCAGGA...........GtCGGAGGTTCGAATCCTCTCGCCCCGACCA chr.trna5-ProCGG Sc: 84.17  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCATCTGCTTTGGGAGCAGAGG...........GtCGCGAGTTCGAATCCCGCCGCCCCGACCA chr.trna43-ProTGG Sc: 87.76  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGACAGGTGGCCGAGTGGTtgA.AGGCGCACGCCTGGAAAGCGTGTATACGT.GATAa.GCGTATCGGGGGTTCGAATCCCCC..TCTGTCCGCCA chr.trna30-SerGGA Sc: 75.09  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.ATGCGCCGGACTCGAAATCCGGTATACGT.TTAG..GCGTATCGTGGGTTCGAATCCCAC..CCTCTCCGCCA chr.trna17-SerCGA Sc: 77.54  



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGATGTGCCCGAGAGGCtgA.AGGGGCTCCCCTGCTAAGGGAGTATGTGGCTAAAaACTGCATCGTGGGTTCGAATCCCAC..CATCTCCGCCA chr.trna11-SerGCT Sc: 69.50  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCATGTGGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCACGCGTTCGATCCGCGTCATGGGCACCA chr.trna3-ThrGGT Sc: 86.85  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGCATAGCTCAGTTGGTA.GAGCAGCGCATTCGTAATGCGAAG...........GtCGGGGGTTCGACTCCTCTTGCCGGCACCA chr.trna42-ThrCGT Sc: 90.68  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGCTCAGTTGGTA.GAGCAGCTCACTTGTAATGAGAAG...........GtCGAGGGTTCGATTCCTTTCACCGGCACCA chr.trna50-ThrTGT Sc: 95.16  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAG...........GtTGTAGGTTCGATTCCTACTGCCCCTGCCA chr.trna4-TrpCCA Sc: 85.26  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>.>.>.....<.<.<<..>>>>>.......<<<<<.<<<<<<<....
GGAGGAGTGCCCGAGTGGTtaA.AGGGGGCAGACTGTAAATCTGTTGGCCTT.....GCGCCTACGTTGGTTCGAATCCAAC.CTCCTCCACCA chr.trna1-TyrGTA Sc: 72.20  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCGGTTAGCTCAGTTGGTtA.GAGCGCTACGTTGACATCGTAGAG...........GtCGTTGGTTCGAACCCAATACCGCCTACCA chr.trna9-ValGAC Sc: 88.50  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGGTTAGCTCAGT.GGT.A.GAGCACTGCCTTCACACGGCAGGG...........GtCACAAGTTCGAAACTTGTACCACCCACCA chr.trna49-ValCAC Sc: 85.38  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGCTTAGCTCAGCTGGT.A.GAGCGGCGCCCTTACAAGGCGTAG...........GtCACAGGTTCGACCCCTGTAGCACCCACCA chr.trna22-ValTAC Sc: 92.08

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.