tRNAscan-SE Analysis of the Bordetella parapertussis Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	44	1520331	1520256	Ala	CGC	0	0	84.28	68.33	15.95	Both

chr	46	1212713	1212638	Ala	GGC	0	0	86.46	68.18	18.28	Both
chr	49	1198009	1197934	Ala	GGC	0	0	86.46	68.18	18.28	Both

chr	20	2583312	2583387	Ala	TGC	0	0	88.49	76.35	12.14	Both
chr	35	4077887	4077812	Ala	TGC	0	0	88.49	76.35	12.14	Both
chr	9	1842276	1842351	Ala	TGC	0	0	88.49	76.35	12.14	Both

chr	17	2450739	2450815	Arg	ACG	0	0	86.25	70.42	15.83	Both
chr	18	2465930	2466006	Arg	ACG	0	0	86.25	70.42	15.83	Both

chr	31	4443761	4443687	Arg	CCG	0	0	66.19	44.21	21.98	Both

chr	45	1293194	1293120	Arg	CCT	0	0	58.52	23.56	34.96	Both

chr	14	2316095	2316171	Arg	TCT	0	0	90.16	61.32	28.84	Both

chr	10	1975390	1975465	Asn	GTT	0	0	87.19	65.32	21.87	Both
chr	30	4648812	4648887	Asn	GTT	0	0	87.19	65.32	21.87	Both

chr	48	1212495	1212419	Asp	GTC	0	0	95.07	76.58	18.49	Both
chr	51	1197791	1197715	Asp	GTC	0	0	95.07	76.58	18.49	Both

chr	28	3819361	3819434	Cys	GCA	0	0	68.57	45.54	23.03	Both

chr	7	878842	878918	Gln	TTG	0	0	77.70	53.26	24.44	Both

chr	47	1212606	1212531	Glu	TTC	0	0	60.10	29.80	30.30	Both
chr	50	1197902	1197827	Glu	TTC	0	0	60.10	29.80	30.30	Both

chr	6	542793	542866	Gly	CCC	0	0	77.64	61.59	16.05	Both

chr	26	3781521	3781596	Gly	GCC	0	0	88.26	64.10	24.16	Both
chr	27	3819225	3819300	Gly	GCC	0	0	88.26	64.10	24.16	Both

chr	2	6556	6629	Gly	TCC	0	0	82.17	64.72	17.45	Both

chr	15	2396937	2397012	His	GTG	0	0	82.63	61.86	20.77	Both

chr	19	2583215	2583291	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr	34	4077984	4077908	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr	8	1842179	1842255	Ile	GAT	0	0	93.29	71.17	22.12	Both

chr	52	529472	529388	Leu	CAA	0	0	75.82	48.70	27.12	Both

chr	40	2722254	2722170	Leu	CAG	0	0	75.85	48.45	27.40	Both
chr	41	2721309	2721225	Leu	CAG	0	0	75.85	48.45	27.40	Both

chr	38	3699358	3699274	Leu	GAG	0	0	63.68	32.34	31.34	Both

chr	24	3702329	3702413	Leu	TAA	0	0	79.53	45.12	34.41	Both

chr	12	2137768	2137854	Leu	TAG	0	0	68.96	49.50	19.46	Both

chr	37	4003691	4003616	Lys	CTT	0	0	88.69	59.55	29.14	Both

chr	36	4022883	4022808	Lys	TTT	0	0	94.70	68.37	26.33	Both

chr	39	3038161	3038083	Met	CAT	0	0	66.21	42.44	23.77	tRNAscan
chr	42	2711741	2711665	Met	CAT	0	0	74.05	46.67	27.38	Both
chr	23	2811859	2811935	Met	CAT	0	0	85.01	60.51	24.50	Both

chr	53	400452	400377	Phe	GAA	0	0	86.41	66.60	19.81	Both

chr	5	325800	325876	Pro	CGG	0	0	84.17	60.95	23.22	Both

chr	22	2803874	2803950	Pro	GGG	0	0	77.19	62.79	14.40	Both

chr	13	2225163	2225239	Pro	TGG	0	0	87.76	70.08	17.68	Both

chr	25	3719822	3719911	Ser	CGA	0	0	77.54	45.79	31.75	Both

chr	16	2435920	2436012	Ser	GCT	0	0	69.50	38.56	30.94	Both

chr	32	4180246	4180156	Ser	GGA	0	0	75.09	49.40	25.69	Both

chr	43	1975218	1975143	Thr	CGT	0	0	90.68	74.97	15.71	Both

chr	3	6636	6710	Thr	GGT	0	0	86.85	57.28	29.57	Both

chr	29	4622238	4622313	Thr	TGT	0	0	95.16	80.06	15.10	Both

chr	4	8068	8143	Trp	CCA	0	0	85.26	62.65	22.61	Both

chr	1	6281	6367	Tyr	GTA	0	0	72.20	40.65	31.55	Both

chr	33	4147672	4147598	Val	CAC	0	0	85.38	59.29	26.09	Both

chr	11	2090948	2091024	Val	GAC	0	0	88.50	60.58	27.92	Both

chr	21	2728633	2728708	Val	TAC	0	0	92.08	70.25	21.83	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.