tRNAscan-SE Analysis of the Bordetella bronchiseptica Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna43 (2648922-2648847)	Length: 76 bp
Type: Ala	Anticodon: CGC at 34-36 (2648889-2648887)	Score: 84.28
Seq: GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAGGtCGGGAGTTCGATCCTCCTCCGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna48 (1444802-1444727)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1444769-1444767)	Score: 86.46
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna51 (1430025-1429950)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (1429992-1429990)	Score: 86.46
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1974648-1974723)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1974681-1974683)	Score: 88.49
Seq: GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGtCATCGGTTCGATCCCGTTCACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna35 (4484779-4484704)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (4484746-4484744)	Score: 88.49
Seq: GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGtCATCGGTTCGATCCCGTTCACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna40 (3620740-3620665)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (3620707-3620705)	Score: 88.49
Seq: GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGATGtCATCGGTTCGATCCCGTTCACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna13 (1843200-1843276)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1843234-1843236)	Score: 86.25
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (1858392-1858468)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (1858426-1858428)	Score: 86.25
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (4878974-4878900)	Length: 75 bp
Type: Arg	Anticodon: CCG at 34-36 (4878941-4878939)	Score: 66.19
Seq: GCGCCCGTAGTTCAATGGAtAGAATGAGAGTTTCCGAAGCTCTTGATACAGGTTCGATTCCTGTCGGGCGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna47 (1526073-1525999)	Length: 75 bp
Type: Arg	Anticodon: CCT at 34-36 (1526040-1526038)	Score: 58.52
Seq: CTCGCCGTAGTTAAATGGAtATAACCGGCCCCTCCTAAGGGTCAAtTGGTGGTTCGATTCCACCCGGCGAGGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (1669653-1669729)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1669687-1669689)	Score: 90.16
Seq: CCGCCCTTAGCTCAGTTGGAtAGAGCACAGGTCTTCTAAACCTGGGGtCACAAGTTCGAATCTTGTAGGGCGGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (5210499-5210574)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (5210532-5210534)	Score: 87.19
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGtCGCTGGTTCGAGCCCAGCTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna41 (3485861-3485786)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (3485828-3485826)	Score: 87.19
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGtCGCTGGTTCGAGCCCAGCTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna50 (1444584-1444508)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1444550-1444548)	Score: 95.07
Seq: GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGCCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna53 (1429812-1429736)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1429778-1429776)	Score: 95.07
Seq: GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGCCCCGTCCGCTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (4217191-4217264)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (4217223-4217225)	Score: 68.57
Seq: GGCGCAATGGCAGAGTGGTTATGCAGCGGATTGCAAATCCGTGTACGTCGGTTCGATTCCGGCTTGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (961270-961346)	Length: 77 bp
Type: Gln	Anticodon: TTG at 35-37 (961304-961306)	Score: 77.70
Seq: TGGGGAGTCGCCAAGCTGGTtAAGGCACCGGATTTTGATTCCGGCATgCGAAGGTTCGAATCCTTCCTCCCCAGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna49 (1444695-1444620)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (1444661-1444659)	Score: 60.10
Seq: GTCCCCTTCGTCTAGAGGCctAGGACATCACCCTTTCACGGTGAGTACAGGGGTTCGAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna52 (1429923-1429848)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (1429889-1429887)	Score: 60.10
Seq: GTCCCCTTCGTCTAGAGGCctAGGACATCACCCTTTCACGGTGAGTACAGGGGTTCGAATCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (544134-544207)	Length: 74 bp
Type: Gly	Anticodon: CCC at 33-35 (544166-544168)	Score: 77.64
Seq: GCGGGTGTAGTTCAATGGTAGAACGGCGGCTTCCCAAGCCTCAAGCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>.>>>.......<<<.<....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (4194126-4194201)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (4194159-4194161)	Score: 88.26
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGCGAGTTCGAGACTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (4217055-4217130)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (4217088-4217090)	Score: 88.26
Seq: GCGGGAATAGCTCAGTTGGTAGAGCGCAACCTTGCCAAGGTTGAGGtCGCGAGTTCGAGACTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna2 (6496-6569)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (6528-6530)	Score: 82.17
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCCTTCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (1750478-1750553)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1750511-1750513)	Score: 82.63
Seq: GTGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTTGtCGTGGGTTCGAGTCCCATCAGCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1974551-1974627)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1974585-1974587)	Score: 93.29
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGAATCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (4484876-4484800)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (4484842-4484840)	Score: 93.29
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGAATCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (3620837-3620761)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (3620803-3620801)	Score: 93.29
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGGGtCGTTGGTTCGAATCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna54 (530823-530739)	Length: 85 bp
Type: Leu	Anticodon: CAA at 35-37 (530789-530787)	Score: 75.82
Seq: GCCCGGGTGGTGAAATTGGTaGACGCAGGGGACTCAAAATCCCCCGCCGCAAGGCGTGCCGGTTCGATTCCGGCCCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna44 (2111567-2111483)	Length: 85 bp
Type: Leu	Anticodon: CAG at 35-37 (2111533-2111531)	Score: 75.85
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCCGCAAGGTGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna45 (2110622-2110538)	Length: 85 bp
Type: Leu	Anticodon: CAG at 35-37 (2110588-2110586)	Score: 75.85
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCCGCAAGGTGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna38 (4114564-4114480)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (4114530-4114528)	Score: 63.68
Seq: GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGCGAAAGCTGTGCGAGTTCGAGTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna24 (4117535-4117619)	Length: 85 bp
Type: Leu	Anticodon: TAA at 35-37 (4117569-4117571)	Score: 79.53
Seq: GCACCCATGGCGAAATTGGTaGACGCAAGGGACTTAAAATCCCTCGCCGCAAGGCGTCCCGGTTCGATTCCGGGTGGGTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna21 (2336338-2336424)	Length: 87 bp
Type: Leu	Anticodon: TAG at 35-37 (2336372-2336374)	Score: 68.96
Seq: GCGAAGGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGACGCCGTAACAGGTGTGCGGGTTCGAGTCCCGCCCTTCGCACCA
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna37 (4410386-4410311)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (4410353-4410351)	Score: 88.69
Seq: GGGCTGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAGGtCGAGTGTTCGAGCCACTCACAGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (4429471-4429396)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (4429438-4429436)	Score: 94.70
Seq: GGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTGGtCGCGCGTTCGAGTCGCGCACGACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (3371268-3371190)	Length: 79 bp
Type: Met	Anticodon: CAT at 37-39 (3371232-3371230)	Score: 66.21
Seq: GGGCCTCTAGCTCAtGCCtGGTtAGAGCAGCGGACTCATAATCCGTTGGtGCCGAGTTCGACTCTCGGGGGGCCTACCA
Str: >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna46 (2101054-2100978)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2101020-2101018)	Score: 81.73
Seq: GGCGCATTAGCTCAGCCGGTtAGAGCGACGGAATCATAATCCGCAGGtCCCCTGTTCGAATCAGGGATGCGCCACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna19 (2201249-2201325)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (2201283-2201285)	Score: 85.01
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna22 (3481554-3481630)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (3481588-3481590)	Score: 85.01
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna11 (1782469-1782543)	Length: 75 bp
Type: Met	Anticodon: CAT at 33-35 (1782501-1782503)	Score: 89.16
Seq: TGCGGCGTAGCTCAGTGGTAGAGCGCCGGGCTCATACCCCGGAGGtCGCAGGTTCGAGCCCTGCCGCCGCTTCCA
Str: .>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna55 (395565-395490)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (395532-395530)	Score: 86.41
Seq: GGCCTGGTAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTTGTGtCGGTGGTTCGATTCCGCCCCAGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna5 (321147-321223)	Length: 77 bp
Type: Pro	Anticodon: CGG at 35-37 (321181-321183)	Score: 84.17
Seq: CGGGGCGTAGCTCAGCCtGGTAGAGTACTGCGTTCGGGACGCAGGAGtCGGAGGTTCGAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (2191896-2191972)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (2191930-2191932)	Score: 77.19
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGGGtCGCGAGTTCGAATCCCGCCGTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

chr.trna8 (1574071-1574147)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1574105-1574107)	Score: 87.76
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGCATCTGCTTTGGGAGCAGAGGGtCGCGAGTTCGAATCCCGCCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

chr.trna25 (4135088-4135177)	Length: 90 bp
Type: Ser	Anticodon: CGA at 35-37 (4135122-4135124)	Score: 77.54
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCGCCGGACTCGAAATCCGGTATACGTTTAGGCGTATCGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna12 (1828380-1828472)	Length: 93 bp
Type: Ser	Anticodon: GCT at 35-37 (1828414-1828416)	Score: 69.50
Seq: GGAGATGTGCCCGAGAGGCtgAAGGGGCTCCCCTGCTAAGGGAGTATGTGGCTAAAaACTGCATCGTGGGTTCGAATCCCACCATCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna32 (4615037-4614947)	Length: 91 bp
Type: Ser	Anticodon: GGA at 35-37 (4615003-4615001)	Score: 75.09
Seq: GGACAGGTGGCCGAGTGGTtgAAGGCGCACGCCTGGAAAGCGTGTATACGTGATAaGCGTATCGGGGGTTCGAATCCCCCTCTGTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna23 (3486033-3486108)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (3486066-3486068)	Score: 90.68
Seq: GCCGGCATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGtCGGGGGTTCGACTCCTCTTGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna3 (6576-6650)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (6608-6610)	Score: 86.85
Seq: GCCCATGTGGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCACGCGTTCGATCCGCGTCATGGGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (5183947-5184022)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (5183980-5183982)	Score: 95.16
Seq: GCCGGTGTAGCTCAGTTGGTAGAGCAGCTCACTTGTAATGAGAAGGtCGAGGGTTCGATTCCTTTCACCGGCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

chr.trna4 (8008-8083)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (8041-8043)	Score: 85.26
Seq: AGGGGTATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGtTGTAGGTTCGATTCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna1 (6221-6307)	Length: 87 bp
Type: Tyr	Anticodon: GTA at 35-37 (6255-6257)	Score: 72.20
Seq: GGAGGAGTGCCCGAGTGGTtaAAGGGGGCAGACTGTAAATCTGTTGGCCTTGCGCCTACGTTGGTTCGAATCCAACCTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>.>.><.<.<<..>>>>>.......<<<<<<<<<<<<....

chr.trna33 (4551898-4551824)	Length: 75 bp
Type: Val	Anticodon: CAC at 33-35 (4551866-4551864)	Score: 85.38
Seq: GGGTGGTTAGCTCAGTGGTAGAGCACTGCCTTCACACGGCAGGGGtCACAAGTTCGAAACTTGTACCACCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (2289502-2289578)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (2289536-2289538)	Score: 88.50
Seq: AGGCGGTTAGCTCAGTTGGTtAGAGCGCTACGTTGACATCGTAGAGGtCGTTGGTTCGAACCCAATACCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (2117960-2118035)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (2117993-2117995)	Score: 92.08
Seq: GGGTGCTTAGCTCAGCTGGTAGAGCGGCGCCCTTACAAGGCGTAGGtCACAGGTTCGACCCCTGTAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.