tRNAscan-SE Analysis of the Bordetella bronchiseptica Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	43	2648922	2648847	View	Ala	CGC	0	0	84.28	68.33	15.95	Both

chr	48	1444802	1444727	View	Ala	GGC	0	0	86.46	68.18	18.28	Both
chr	51	1430025	1429950	View	Ala	GGC	0	0	86.46	68.18	18.28	Both

chr	16	1974648	1974723	View	Ala	TGC	0	0	88.49	76.35	12.14	Both
chr	35	4484779	4484704	View	Ala	TGC	0	0	88.49	76.35	12.14	Both
chr	40	3620740	3620665	View	Ala	TGC	0	0	88.49	76.35	12.14	Both

chr	13	1843200	1843276	View	Arg	ACG	0	0	86.25	70.42	15.83	Both
chr	14	1858392	1858468	View	Arg	ACG	0	0	86.25	70.42	15.83	Both

chr	31	4878974	4878900	View	Arg	CCG	0	0	66.19	44.21	21.98	Both

chr	47	1526073	1525999	View	Arg	CCT	0	0	58.52	23.56	34.96	Both

chr	9	1669653	1669729	View	Arg	TCT	0	0	90.16	61.32	28.84	Both

chr	30	5210499	5210574	View	Asn	GTT	0	0	87.19	65.32	21.87	Both
chr	41	3485861	3485786	View	Asn	GTT	0	0	87.19	65.32	21.87	Both

chr	50	1444584	1444508	View	Asp	GTC	0	0	95.07	76.58	18.49	Both
chr	53	1429812	1429736	View	Asp	GTC	0	0	95.07	76.58	18.49	Both

chr	28	4217191	4217264	View	Cys	GCA	0	0	68.57	45.54	23.03	Both

chr	7	961270	961346	View	Gln	TTG	0	0	77.70	53.26	24.44	Both

chr	49	1444695	1444620	View	Glu	TTC	0	0	60.10	29.80	30.30	Both
chr	52	1429923	1429848	View	Glu	TTC	0	0	60.10	29.80	30.30	Both

chr	6	544134	544207	View	Gly	CCC	0	0	77.64	61.59	16.05	Both

chr	26	4194126	4194201	View	Gly	GCC	0	0	88.26	64.10	24.16	Both
chr	27	4217055	4217130	View	Gly	GCC	0	0	88.26	64.10	24.16	Both

chr	2	6496	6569	View	Gly	TCC	0	0	82.17	64.72	17.45	Both

chr	10	1750478	1750553	View	His	GTG	0	0	82.63	61.86	20.77	Both

chr	15	1974551	1974627	View	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr	34	4484876	4484800	View	Ile	GAT	0	0	93.29	71.17	22.12	Both
chr	39	3620837	3620761	View	Ile	GAT	0	0	93.29	71.17	22.12	Both

chr	54	530823	530739	View	Leu	CAA	0	0	75.82	48.70	27.12	Both

chr	44	2111567	2111483	View	Leu	CAG	0	0	75.85	48.45	27.40	Both
chr	45	2110622	2110538	View	Leu	CAG	0	0	75.85	48.45	27.40	Both

chr	38	4114564	4114480	View	Leu	GAG	0	0	63.68	32.34	31.34	Both

chr	24	4117535	4117619	View	Leu	TAA	0	0	79.53	45.12	34.41	Both

chr	21	2336338	2336424	View	Leu	TAG	0	0	68.96	49.50	19.46	Both

chr	37	4410386	4410311	View	Lys	CTT	0	0	88.69	59.55	29.14	Both

chr	36	4429471	4429396	View	Lys	TTT	0	0	94.70	68.37	26.33	Both

chr	42	3371268	3371190	View	Met	CAT	0	0	66.21	42.44	23.77	tRNAscan
chr	46	2101054	2100978	View	Met	CAT	0	0	81.73	54.35	27.38	Both
chr	19	2201249	2201325	View	Met	CAT	0	0	85.01	60.51	24.50	Both
chr	22	3481554	3481630	View	Met	CAT	0	0	85.01	60.51	24.50	Both
chr	11	1782469	1782543	View	Met	CAT	0	0	89.16	71.78	17.38	Both

chr	55	395565	395490	View	Phe	GAA	0	0	86.41	66.60	19.81	Both

chr	5	321147	321223	View	Pro	CGG	0	0	84.17	60.95	23.22	Both

chr	18	2191896	2191972	View	Pro	GGG	0	0	77.19	62.79	14.40	Both

chr	8	1574071	1574147	View	Pro	TGG	0	0	87.76	70.08	17.68	Both

chr	25	4135088	4135177	View	Ser	CGA	0	0	77.54	45.79	31.75	Both

chr	12	1828380	1828472	View	Ser	GCT	0	0	69.50	38.56	30.94	Both

chr	32	4615037	4614947	View	Ser	GGA	0	0	75.09	49.40	25.69	Both

chr	23	3486033	3486108	View	Thr	CGT	0	0	90.68	74.97	15.71	Both

chr	3	6576	6650	View	Thr	GGT	0	0	86.85	57.28	29.57	Both

chr	29	5183947	5184022	View	Thr	TGT	0	0	95.16	80.06	15.10	Both

chr	4	8008	8083	View	Trp	CCA	0	0	85.26	62.65	22.61	Both

chr	1	6221	6307	View	Tyr	GTA	0	0	72.20	40.65	31.55	Both

chr	33	4551898	4551824	View	Val	CAC	0	0	85.38	59.29	26.09	Both

chr	20	2289502	2289578	View	Val	GAC	0	0	88.50	60.58	27.92	Both

chr	17	2117960	2118035	View	Val	TAC	0	0	92.08	70.25	21.83	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.