tRNAscan-SE Analysis of the Bordetella bronchiseptica Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chr.trna51-AlaGGC Sc: 86.46  
GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTACCTCCACCA chr.trna48-AlaGGC Sc: 86.46  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCGGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAG...........GtCGGGAGTTCGATCCTCCTCCGCTCCACCA chr.trna43-AlaCGC Sc: 84.28  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCATCGGTTCGATCCCGTTCACCTCCACCA chr.trna40-AlaTGC Sc: 88.49  
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCATCGGTTCGATCCCGTTCACCTCCACCA chr.trna35-AlaTGC Sc: 88.49  
GGGGGTGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAT...........GtCATCGGTTCGATCCCGTTCACCTCCACCA chr.trna16-AlaTGC Sc: 88.49  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGCCCGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGC.CGGGCGCGCCA chr.trna14-ArgACG Sc: 86.25  
GCGCCCGTAGCTCAGTTGGAtA.GAGTACTTGGCTACGAACCAAGGG...........GtCGTGGGTTCGAATCCTGC.CGGGCGCGCCA chr.trna13-ArgACG Sc: 86.25  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGCCCGTAGTTCAAT.GGAtA.GAATGAGAGTTTCCGAAGCTCTTG...........A.TACAGGTTCGATTCCTGT.CGGGCGCGCCA chr.trna31-ArgCCG Sc: 66.19  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
CTCGCCGTAGTTAAAT.GGAtA.TAACCGGCCCCTCCTAAGGGTCA............AtTGGTGGTTCGATTCCACC.CGGCGAGGCCA chr.trna47-ArgCCT Sc: 58.52  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
CCGCCCTTAGCTCAGTTGGAtA.GAGCACAGGTCTTCTAAACCTGGG...........GtCACAAGTTCGAATCTTGT.AGGGCGGGCCA chr.trna9-ArgTCT Sc: 90.16  



Asn tRNAs



>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCTCGGGGAGCCA chr.trna41-AsnGTT Sc: 87.19  
TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAG...........GtCGCTGGTTCGAGCCCAGCTCGGGGAGCCA chr.trna30-AsnGTT Sc: 87.19  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCGCTCCGCCA chr.trna53-AspGTC Sc: 95.07  
GGAGCGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGG...........GtCGCGGGTTCGAGCCCCGTCCGCTCCGCCA chr.trna50-AspGTC Sc: 95.07  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGCAATGGCAGAGTGGTT.ATGCAGCGGATTGCAAATCCGTGT...........ACGTCGGTTCGATTCCGGCTTGCGCCTCCA chr.trna28-CysGCA Sc: 68.57  



Gln tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGAGTCGCCAAGCTGGTtAAGGCACCGGATTTTGATTCCGGCA...........TgCGAAGGTTCGAATCCTTCCTCCCCAGCCA chr.trna7-GlnTTG Sc: 77.70  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna52-GluTTC Sc: 60.10  
GTCCCCTTCGTCTAGAGGCctA.GGACATCACCCTTTCACGGTGAGT...........ACAGGGGTTCGAATCCCCTAGGGGACGCCA chr.trna49-GluTTC Sc: 60.10  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTTTCCCGCTCCA chr.trna27-GlyGCC Sc: 88.26  
GCGGGAATAGCTCAGTTGGTA.GAGCGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAGACTCGTTTCCCGCTCCA chr.trna26-GlyGCC Sc: 88.26  

>>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGTTCAAT.GGTA.GAACGGCGGCTTCCCAAGCCTCAA...........G.CGTGGGTTCGATTCCCATCACCCGCTCCA chr.trna6-GlyCCC Sc: 77.64  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAAT.GGTA.GAGCAGAAGCCTTCCAAGCTTACG...........A.CGAGGGTTCGATTCCCTTCACCCGCTCCA chr.trna2-GlyTCC Sc: 82.17  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGCTGTAGCTCAGTTGGTAGAGTCCCGGATTGTGATTCCGGTT...........GtCGTGGGTTCGAGTCCCATCAGCCACCCCA chr.trna10-HisGTG Sc: 82.63  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr.trna39-IleGAT Sc: 93.29  
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr.trna34-IleGAT Sc: 93.29  
GGGTCTGTAGCTCAGTCGGTtAGAGCACCGTCTTGATAAGGCGGGG...........GtCGTTGGTTCGAATCCAACCAGACCCACCA chr.trna15-IleGAT Sc: 93.29  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCGACGTGGTGAAATTGGTaGACACGCTATCTTGAGGGGGTAGTGGC.GAAA....GCTGTGCGAGTTCGAGTCTCGC.CGTCGGCACCA chr.trna38-LeuGAG Sc: 63.68  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCC.GCAA....GGTGTGGAGGTTCGAGTCCTCT.CCTGGGCACCA chr.trna45-LeuCAG Sc: 75.85  
GCCCAGGTGGCGGAATTGGTaGACGCGCATGGTTCAGGTCCATGTGCC.GCAA....GGTGTGGAGGTTCGAGTCCTCT.CCTGGGCACCA chr.trna44-LeuCAG Sc: 75.85  

>>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCGAAGGTGGCGAAATTGGTaGACGCACCAGGTTTAGGTCCTGACGCCGTAAC...AGGTGTGCGGGTTCGAGTCCCGC.CCTTCGCACCA chr.trna21-LeuTAG Sc: 68.96  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGTGAAATTGGTaGACGCAGGGGACTCAAAATCCCCCGCC.GCAA....GGCGTGCCGGTTCGATTCCGGC.CCCGGGCACCA chr.trna54-LeuCAA Sc: 75.82  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.........<<<..>>>>>.......<<<<<.<<<<<<<....
GCACCCATGGCGAAATTGGTaGACGCAAGGGACTTAAAATCCCTCGCC.GCAA....GGCGTCCCGGTTCGATTCCGGG.TGGGTGCACCA chr.trna24-LeuTAA Sc: 79.53  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTGTTAGCTCAGTTGGTAGAGCAGCGGACTCTTAATCCGTAG...........GtCGAGTGTTCGAGCCACTCACAGCCCACCA chr.trna37-LysCTT Sc: 88.69  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTTGGTAGAGCAGCGGACTTTTAATCCGTTG...........GtCGCGCGTTCGAGTCGCGCACGACCCACCA chr.trna36-LysTTT Sc: 94.70  



Met tRNAs


.>>>>>>..>>>>............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
TGCGGCGTAGCTCA.GT..GGT.A.GAGCGCCGGGCTCATACCCCGGAG...........GtCGCAGGTTCGAGCCCTGCCGCCGCTTCCA chr.trna11-MetCAT Sc: 89.16  
CGCGGGGTGGAGCA.GTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAACCA chr.trna22-MetCAT Sc: 85.01  
CGCGGGGTGGAGCA.GTCtGGC.A.GCTCGTCGGGCTCATAACCCGAAG...........GtCGTAGGTTCAAATCCTGCCCCCGCAACCA chr.trna19-MetCAT Sc: 85.01  
>>>>>>>..>>>>............<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GGCGCATTAGCTCA.GCC.GGTtA.GAGCGACGGAATCATAATCCGCAG...........GtCCCCTGTTCGAATCAGGGATGCGCCACCA chr.trna46-MetCAT Sc: 81.73  
>>>>>>>..>>>>............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTCTAGCTCAtGCCtGGTtA.GAGCAGCGGACTCATAATCCGTTG...........GtGCCGAGTTCGACTCTCGGGGGGCCTACCA chr.trna42-MetCAT Sc: 66.21  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCTGGTAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTTGT...........GtCGGTGGTTCGATTCCGCCCCAGGCCACCA chr.trna55-PheGAA Sc: 86.41  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCACTTGCATGGGGTGCAAGGG...........GtCGCGAGTTCGAATCCCGCCGTCCCGACCA chr.trna18-ProGGG Sc: 77.19  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGCGTAGCTCAGCCtGGTAGAGTACTGCGTTCGGGACGCAGGA...........GtCGGAGGTTCGAATCCTCTCGCCCCGACCA chr.trna5-ProCGG Sc: 84.17  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>.>.......<.<<<<<<<<<<....
CGGGGCGTAGCGCAGCCtGGTAGCGCATCTGCTTTGGGAGCAGAGG...........GtCGCGAGTTCGAATCCCGCCGCCCCGACCA chr.trna8-ProTGG Sc: 87.76  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGACAGGTGGCCGAGTGGTtgA.AGGCGCACGCCTGGAAAGCGTGTATACGT.GATAa.GCGTATCGGGGGTTCGAATCCCCC..TCTGTCCGCCA chr.trna32-SerGGA Sc: 75.09  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.ATGCGCCGGACTCGAAATCCGGTATACGT.TTAG..GCGTATCGTGGGTTCGAATCCCAC..CCTCTCCGCCA chr.trna25-SerCGA Sc: 77.54  



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>.......<<<<<<.>>>>>.......<<<<<..<<<<<<<....
GGAGATGTGCCCGAGAGGCtgA.AGGGGCTCCCCTGCTAAGGGAGTATGTGGCTAAAaACTGCATCGTGGGTTCGAATCCCAC..CATCTCCGCCA chr.trna12-SerGCT Sc: 69.50  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCATGTGGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCACGCGTTCGATCCGCGTCATGGGCACCA chr.trna3-ThrGGT Sc: 86.85  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGCATAGCTCAGTTGGTA.GAGCAGCGCATTCGTAATGCGAAG...........GtCGGGGGTTCGACTCCTCTTGCCGGCACCA chr.trna23-ThrCGT Sc: 90.68  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGCTCAGTTGGTA.GAGCAGCTCACTTGTAATGAGAAG...........GtCGAGGGTTCGATTCCTTTCACCGGCACCA chr.trna29-ThrTGT Sc: 95.16  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTATAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAG...........GtTGTAGGTTCGATTCCTACTGCCCCTGCCA chr.trna4-TrpCCA Sc: 85.26  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>.>.>.....<.<.<<..>>>>>.......<<<<<.<<<<<<<....
GGAGGAGTGCCCGAGTGGTtaA.AGGGGGCAGACTGTAAATCTGTTGGCCTT.....GCGCCTACGTTGGTTCGAATCCAAC.CTCCTCCACCA chr.trna1-TyrGTA Sc: 72.20  



Val tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCGGTTAGCTCAGTTGGTtA.GAGCGCTACGTTGACATCGTAGAG...........GtCGTTGGTTCGAACCCAATACCGCCTACCA chr.trna20-ValGAC Sc: 88.50  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGGTTAGCTCAGT.GGT.A.GAGCACTGCCTTCACACGGCAGGG...........GtCACAAGTTCGAAACTTGTACCACCCACCA chr.trna33-ValCAC Sc: 85.38  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTGCTTAGCTCAGCTGGT.A.GAGCGGCGCCCTTACAAGGCGTAG...........GtCACAGGTTCGACCCCTGTAGCACCCACCA chr.trna17-ValTAC Sc: 92.08

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.