tRNAscan-SE Analysis of the Blochmannia floridanus Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	46904	46985	View	Leu	CAA	0	0	57.72	28.79	28.93	Both
chr	2	82596	82669	View	Gly	GCC	0	0	79.17	55.15	24.02	Both
chr	3	110685	110768	View	Leu	GAG	0	0	44.99	26.14	18.85	Both
chr	4	110836	110912	View	Met	CAT	0	0	82.21	57.94	24.27	Both
chr	5	204652	204742	View	Ser	GCT	0	0	57.55	23.79	33.76	Both
chr	6	204800	204873	View	Arg	ACG	0	0	79.10	61.23	17.87	Both
chr	7	219918	219989	View	Thr	TGT	0	0	77.81	65.49	12.32	Both
chr	8	220004	220085	View	Tyr	GTA	0	0	66.39	28.77	37.62	Both
chr	9	220138	220209	View	Gly	TCC	0	0	42.59	13.92	28.67	Eufind
chr	10	220246	220317	View	Thr	GGT	0	0	73.01	49.71	23.30	Both
chr	11	241865	241937	View	Thr	CGT	0	0	73.67	57.62	16.05	Both
chr	12	338731	338804	View	Arg	TCT	0	0	71.59	42.75	28.84	Both
chr	13	456786	456857	View	Lys	CTT	0	0	79.31	56.80	22.51	Both
chr	14	505174	505261	View	Ser	GGA	0	0	53.70	18.72	34.98	Both
chr	15	505897	505972	View	Asn	GTT	0	0	85.94	62.64	23.30	Both
chr	16	556861	556932	View	Arg	CCT	0	0	52.37	12.78	39.59	Both
chr	17	561868	561940	View	Val	TAC	0	0	72.12	49.14	22.98	Both
chr	18	561984	562056	View	Lys	TTT	0	0	90.12	68.88	21.24	Both
chr	19	705085	705012	View	Ile	GAT	0	0	81.35	57.63	23.72	Both
chr	20	664314	664242	View	Ala	TGC	0	0	80.93	60.49	20.44	Both
chr	21	664177	664101	View	Asp	GTC	0	0	87.47	71.00	16.47	Both
chr	22	664046	663975	View	Trp	CCA	0	0	70.05	44.42	25.63	Both
chr	23	653133	653060	View	Arg	CCG	0	0	66.11	46.89	19.22	Both
chr	24	652988	652914	View	His	GTG	0	0	73.32	50.53	22.79	Both
chr	25	652885	652799	View	Leu	CAG	0	0	45.40	19.72	25.68	Both
chr	26	652786	652713	View	Pro	TGG	0	0	77.60	55.36	22.24	Both
chr	27	616408	616337	View	Glu	TTC	0	0	49.34	25.40	23.94	Both
chr	28	505721	505634	View	Ser	CGA	0	0	52.03	16.61	35.42	Both
chr	29	457082	456999	View	Ser	TGA	0	0	50.49	14.87	35.62	Both
chr	30	455468	455398	View	Cys	GCA	0	0	56.37	23.28	33.09	Both
chr	31	455378	455296	View	Leu	TAA	0	0	59.80	24.56	35.24	Both
chr	32	402258	402185	View	Val	GAC	0	0	72.33	44.65	27.68	Both
chr	33	354170	354097	View	Met	CAT	0	0	78.66	55.46	23.20	Both
chr	34	354041	353957	View	Leu	TAG	0	0	47.33	17.57	29.76	Both
chr	35	353907	353836	View	Gln	TTG	0	0	67.90	37.94	29.96	Both
chr	36	73366	73291	View	Phe	GAA	0	0	85.67	60.10	25.57	Both
chr	37	59570	59497	View	Met	CAT	0	0	87.58	63.64	23.94	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.