tRNAscan-SE Analysis of the Blochmannia floridanus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs





>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAATTGGGAGAGCATCTGTTTTGCACACAGAAG...........GtTAGCGGTTCGATTCCGCTTAGCTCCA... chr.trna20-AlaTGC Sc: 80.93  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCACCCGTAGCTCAGTTGGAtA.GAGCACTCGGCTACGAACCGAGAG...........GtCGGGGGTTCAAATCCTCT.CGGGTGTA... chr.trna6-ArgACG Sc: 79.10  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<..<<<<<<<....
GCGTCCGTAGCTTAATTGGAtA.GAGCATTGCCCTCCGAAGGCAAAG...........GtGTCAGGTTCGATCCCTGT.CGGGCGCA... chr.trna23-ArgCCG Sc: 66.11  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GTCTTCGTAGTTAAAC.GGAtA.TAACAAGCCTCTCCTAAAGGCTA............AtTACAGGTTCGATCCCTGT.CGAAGACA... chr.trna16-ArgCCT Sc: 52.37  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<....
GCGCTCTTAACTCAATAGGAtA.GAGTAACGGCCTTCTAAGCCGTAA...........GtTATAGGTTCGAATCCTAT.AGAGCGCA... chr.trna12-ArgTCT Sc: 71.59  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTAT...........GtCACTGGTTCAAATCCAGTCAGGGGAGCCA chr.trna15-AsnGTT Sc: 85.94  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGCGGTAGTTCAGATGGTtAGAATATCGGCTTGTCACGCCGGAG...........GtCGCGGGTTCGAATCCCGTCCGCACCGCCA chr.trna21-AspGTC Sc: 87.47  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCGCGTTAACAAAGTGGTA.ATGTAGCGGACTGCAAATCCGTAT...........AGCTCGGTTCGAATCCGAGACGCGCCT... chr.trna30-CysGCA Sc: 56.37  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATAGCCAAGCGGTA.AGGCAGCGGGTTTTGATCCCGCCA...........CtCCCAGGTTCGAATCCTGGTACCCCAG... chr.trna35-GlnTTG Sc: 67.90  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTCCCCTTCGTCTAGAGGTtA.GGACACTGCCCTTTCACGGCGGCA...........ACAGGGGTTCGAAACCCCTAGGGGACA... chr.trna27-GluTTC Sc: 49.34  



Gly tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAGATGGTtA.GAGTGCAACCTTGCCAAGGTTGAG...........GtCGCGAGTTCGAATCTCGTTTCCCGCT... chr.trna2-GlyGCC Sc: 79.17  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGGCATCGTATAAT.GGTtA.TTACCTCAACCTTCCAAGTTGATG...........A.TGTGGGTTCGATTCCCACTGTCCGCT... chr.trna9-GlyTCC Sc: 42.59  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGATTGTAGCTCAGTTGGTAGAGCTCTGGATTGTGGTTCCAGTG...........GtCGTGGGTTCGAATCCCATCAGTCAC.CCA chr.trna24-HisGTG Sc: 73.32  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGCTTGTAGCTCAGCCGGTtAGAGCGCACCCCTGATAAGGGTGAG...........GtCGGTGGTTCAAGTCCACTCAGGCCTA... chr.trna19-IleGAT Sc: 81.35  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.......>>.........<<........>>>>>.......<<<<<.<<<<<<<....
GCCGAGATGGTGAAATTtGGTaTACACGCTACTTTGAGGGGGTAGTC.....CGGTTAa....TG.....GtTGCGGGTTCAAATCCCGT.TCTCGGCA... chr.trna3-LeuGAG Sc: 44.99  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>...............<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGAAGGTGGCGAAATA.GGTaGACGCACTAGCTTCAGGGGTTAGT.GTCTTGT....a....TGTAGACG.TAAGGGTTCAAATCCCTT.CCTTCGTA... chr.trna25-LeuCAG Sc: 45.40  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.................<<<...>>>>>.......<<<<<.<<<<<<<....
ACGGGAGTGGCGAAATA.GGTaGACGCGTCAGAGTTAGAGTCTGAT.ATC....CTTA.........GATA.TGCGAGTTCAAATCTCGC.CTCCCGTATCA chr.trna34-LeuTAG Sc: 47.33  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.................<<<...>>>>>.......<<<<<.<<<<<<<....
GCCGAAGTGGCGGAAAA.GGTaGACGCAATTGATTCAAAATCAATC.ACT....GTGA.........GGTG.TGTCGGTTCGAGTCCGAC.CTTCGGTA... chr.trna1-LeuCAA Sc: 57.72  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.................<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCGGGTGGTGGAATT.GGTaGACACAAGGGACTTAAAATCCCTC.AGT....TTTAt........ACTG.TACGAGTTCAAGTCTCGT.CCCGGGTA... chr.trna31-LeuTAA Sc: 59.80  



Lys tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAAT.GGTA.GAGCAGTTGACTCTTAATCAATTG...........AtTGTAGGTTCGAGTCCTACACGACCCA... chr.trna13-LysCTT Sc: 79.31  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGTCGTTAGCTCAGTTGGTA.GAGCAGTTGACTTTTAATCAATTG...........GtCGCAGGTTCAAGTCCTGCACGACCCA... chr.trna18-LysTTT Sc: 90.12  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCTTTAGCTCAGTT.GGTtAGAGCAGGCGACTCATAATCGCTTG...........GtCACTGGTTCAAATCCAGTAAGGGCCA... chr.trna37-MetCAT Sc: 87.58  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTAtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GtCGTTGGTTCAAATCCGACCCCCGCAACCA chr.trna4-MetCAT Sc: 82.21  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTACGTAGCTCAGAT.GGTtAGAGCGCAGCACTCATAATGCTGAG...........GgCACAGGTTCAAATCCTGTCGTAGCTA... chr.trna33-MetCAT Sc: 78.66  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAGATAGCTCAGTTGGTAGAGCAGAGGACTGAAGATCCTCGT...........GtCCTTGGTTCGATTCCGAGTCTGGGCACCA chr.trna36-PheGAA Sc: 85.67  



Pro tRNAs





>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGCGAGTGGCGCAGTTtGGTAGCGTGGCTGGTTTGGGACCAGTAG...........GtCGGAGGTTCGAATCCTCTCTCGCCGA... chr.trna26-ProTGG Sc: 77.60  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>........<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGTGAGGTGTCCGAGAGGCtcA.AGGAGCATGCCTGGAAAGCATGT.ATACAT.ATAAt..ATGTAT..CAAGGGTTCGAATCCCTT..CCTCACCG... chr.trna14-SerGGA Sc: 53.70  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>..........<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGCCGGAGTGGAtgA.ACGGGACGGTTTCGAAAATCGTTAAAGAAT.GTAA...TTTTTT..CAAGGGTTCGAATCCCTT..TCTCTCCT... chr.trna28-SerCGA Sc: 52.03  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>................<....>>>>>.......<<<<<..<<<<<<<....
GGAGGAGTGGCCGAGAGGAtgA.AGGCGCCGGTCTTGAAAATCGGTAATG....TAAA......AAATtCTAGAGTTCGAATCTCTA..CTCCTCCG... chr.trna29-SerTGA Sc: 50.49  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>>......<<<<<<<...>>>>>.......<<<<<..<<<<<<<....
AGTGAGGTGGCCGAGAGGCtaA.AGGCACTCCCCTGCTAAGGGAGT.ATATAGTCTAAatACTGTAT..CGAGGGTTCGAATCCCTC..CCTCACTG... chr.trna5-SerGCT Sc: 57.55  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>.>>>.......<<<.<................>>>>>.......<<<<<<<<<<<<....
GCTGATATAGCTCAGG.GGCA.GAGCACTCCCTTGGTAAGGGTGAG...........GtCGGCAGTTCGATTCTGCTTATCAGCA... chr.trna10-ThrGGT Sc: 73.01  

>>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCCGATATAGCTTAATTGGTA.GAGCAATGCATTCGTAATGCAAAG...........GtTGTAGGTTCGAATCCTATTGTCGGCA... chr.trna11-ThrCGT Sc: 73.67  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGGTGTAGCTCAAT.GGTA.GAGCAACTGATTTGTAATCAGTGG...........GtTAAGGGTTCAAATCCTTTTGCCGGCA... chr.trna7-ThrTGT Sc: 77.81  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTGTAGTTCAATGGTA.GAATATCGGTCTCCAAAACCGAGG...........GtTGGGAGTTCAAGTCTCTTCACCCCTG... chr.trna22-TrpCCA Sc: 70.05  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GATGGGGTGCCCGAGTGGTtaA.AGGGAGCAGACTGTAAATCTGCCGTCGTA.....GACTtCGAAGGTTCAAATCCTTC.CCCCATCA... chr.trna8-TyrGTA Sc: 66.39  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGTTCTTAGCTCAGTTGGTtAGAGTGCTACCGTGACATGGTAGAG...........GtCGATGGTTCGAGTCCATTAGAACGCA... chr.trna32-ValGAC Sc: 72.33  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGTGATTAGCTCAATAGGT.AGAGTATCTCTCTTACAAGGAGAAG...........GtCGGCGGTTCAAATCCGCCATCACCTA... chr.trna17-ValTAC Sc: 72.12

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.