tRNAscan-SE Analysis of the Bifidobacterium longum Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	23	1769952	1770027	View	Ala	CGC	0	0	78.13	52.46	25.67	tRNAscan

chr	10	778709	778784	View	Ala	GGC	0	0	83.42	63.44	19.98	Both
chr	11	778871	778946	View	Ala	GGC	0	0	83.42	63.44	19.98	Both

chr	22	1606279	1606351	View	Ala	TGC	0	0	89.29	70.75	18.54	Both

chr	52	747472	747399	View	Arg	ACG	0	0	73.57	58.64	14.93	Both
chr	53	747369	747296	View	Arg	ACG	0	0	73.57	58.64	14.93	Both

chr	45	1280666	1280591	View	Arg	CCG	0	0	82.97	62.10	20.87	Both

chr	36	2171440	2171512	View	Arg	CCT	0	0	83.05	59.36	23.69	Both

chr	49	981253	981177	View	Arg	TCT	0	0	76.80	59.62	17.18	Both

chr	55	383040	382968	View	Asn	GTT	0	0	81.02	53.91	27.11	Both
chr	54	440150	440078	View	Asn	GTT	0	0	81.86	55.15	26.71	Both
chr	56	382924	382849	View	Asn	GTT	0	0	89.32	62.19	27.13	Both

chr	32	2087969	2088042	View	Asp	GTC	0	0	81.74	67.43	14.31	Both
chr	34	2110850	2110926	View	Asp	GTC	0	0	90.04	75.70	14.34	Both

chr	3	503649	503719	View	Cys	GCA	0	0	54.73	28.94	25.79	Both

chr	42	1424867	1424793	View	Gln	CTG	0	0	64.01	34.64	29.37	Both

chr	9	775646	775716	View	Gln	TTG	0	0	50.35	22.06	28.29	Both

chr	41	1424979	1424904	View	Glu	CTC	0	0	48.46	26.42	22.04	Both

chr	37	2085473	2085402	View	Glu	TTC	0	0	53.59	31.35	22.24	Eufind

chr	40	1524215	1524142	View	Gly	CCC	0	0	63.99	40.74	23.25	Both

chr	46	1264704	1264632	View	Gly	GCC	0	0	76.07	55.00	21.07	Both
chr	2	503549	503624	View	Gly	GCC	0	0	76.69	55.60	21.09	Both
chr	6	503985	504060	View	Gly	GCC	0	0	84.37	63.28	21.09	Both

chr	25	1936132	1936205	View	Gly	TCC	0	0	79.76	58.62	21.14	Both

chr	13	937056	937131	View	His	GTG	0	0	82.14	53.68	28.46	Both

chr	21	1606163	1606236	View	Ile	GAT	0	0	93.28	71.99	21.29	Both

chr	51	804463	804390	View	Leu	CAA	0	0	48.19	26.89	21.30	Both

chr	20	1534802	1534887	View	Leu	CAG	0	0	58.67	30.14	28.53	Both

chr	8	648764	648851	View	Leu	GAG	0	0	57.72	37.90	19.82	Both

chr	50	841136	841055	View	Leu	TAA	0	0	60.16	35.46	24.70	Both

chr	15	1202593	1202676	View	Leu	TAG	0	0	67.07	41.51	25.56	Both

chr	44	1350074	1350001	View	Lys	CTT	0	0	87.20	65.40	21.80	Both

chr	43	1388950	1388875	View	Lys	TTT	0	0	77.70	55.89	21.81	Both

chr	28	1971555	1971631	View	Met	CAT	0	0	79.34	58.74	20.60	Both
chr	35	2130626	2130699	View	Met	CAT	0	0	81.10	59.23	21.87	Both
chr	17	1295466	1295542	View	Met	CAT	0	0	83.43	54.07	29.36	Both

chr	33	2088090	2088165	View	Phe	GAA	0	0	75.92	52.87	23.05	Both

chr	38	2068713	2068637	View	Pro	CGG	0	0	80.22	56.06	24.16	Both

chr	7	521008	521084	View	Pro	GGG	0	0	83.07	61.24	21.83	Both

chr	12	793729	793805	View	Pro	TGG	0	0	84.46	65.04	19.42	Both

chr	19	1414391	1414464	View	Pseudo	GGT	0	0	36.78	37.76	-0.98	Eufind

chr	30	2016025	2016112	View	Ser	CGA	0	0	60.61	20.01	40.60	Both

chr	29	1979312	1979401	View	Ser	GCT	0	0	55.64	25.65	29.99	Both

chr	18	1410594	1410681	View	Ser	GGA	0	0	60.01	28.17	31.84	Both

chr	31	2047072	2047159	View	Ser	TGA	0	0	63.66	21.79	41.87	Both

chr	16	1208139	1208211	View	Thr	CGT	0	0	53.41	28.78	24.63	Both
chr	14	1202433	1202505	View	Thr	CGT	0	0	79.68	49.92	29.76	Both

chr	27	1971479	1971550	View	Thr	GGT	0	0	74.46	48.34	26.12	Both

chr	39	1646911	1646835	View	Thr	TGT	0	0	77.74	52.68	25.06	Both

chr	57	207457	207382	View	Trp	CCA	0	0	54.64	32.34	22.30	Eufind
chr	24	1905665	1905740	View	Trp	CCA	0	0	87.91	64.65	23.26	Both

chr	26	1971396	1971477	View	Tyr	GTA	0	0	59.16	28.78	30.38	Both

chr	5	503881	503953	View	Val	CAC	0	0	80.71	55.69	25.02	Both
chr	48	1264465	1264390	View	Val	CAC	0	0	81.33	56.29	25.04	Both

chr	47	1264585	1264514	View	Val	GAC	0	0	78.26	58.24	20.02	Both
chr	4	503761	503835	View	Val	GAC	0	0	78.88	58.84	20.04	Both

chr	1	115187	115260	View	Val	TAC	0	0	88.93	68.31	20.62	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.