tRNAscan-SE Analysis of the Bifidobacterium longum Genome |
| [Main Overview] [Secondary Structures] | [Analysis Notes] |
| [tRNAs by Isotype] [tRNAs by Locus] | [Run Options/Stats] | [tRNA Alignments][FASTA Seqs] | [Genome DB] [Genome Seq] |
| [BLAST] [Download] [Bugs/Requests] [Citation] [Legend] |
| [GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links] |
| Structurally Aligned tRNAs (by Isotype & Anticodon) |
Ala tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCGCAGCTGGTAGCGCATCTCCATGGCATGGAGAGG...........GtCGGGGGTTCGAATCCCCCTAGCTCCACGA chr.trna10-AlaGGC Sc: 83.42 GGGGCTATAGCGCAGCTGGTAGCGCATCTCCATGGCATGGAGAGG...........GtCGGGGGTTCGAATCCCCCTAGCTCCACAA chr.trna11-AlaGGC Sc: 83.42 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTGTAGCTCAGTTGGTAGAGCGCTTCGTTCGCATCGAAGAG...........GtCGCGGTTTCGACTACCGTCAGCTCCACGA chr.trna23-AlaCGC Sc: 78.13 >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGGCTATAGCGCAGCTGGTAGCGCATCTGCTTTGCAAGCAGAGG...........GtCGCCGGTTCGAACCCGGCTAGCTCCA... chr.trna22-AlaTGC Sc: 89.29Arg tRNAs
>>>>>>>..>>.>...........<.<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGCCAGTAGCCCAGC.GGAttA.GAGCAGCTGACTACGGATCAGCAG...........GtCGCAGGTTCGAATCCTGTCTGGCGCA... chr.trna53-ArgACG Sc: 73.57 GCGCCAGTAGCCCAGC.GGAttA.GAGCAGCTGACTACGGATCAGCAG...........GtCGCAGGTTCGAATCCTGTCTGGCGCA... chr.trna52-ArgACG Sc: 73.57 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGTTTGTAGCTCAGT.GGAt.A.GAGCGTCTGTCTCCGGAACAGAAG...........GtCGTGGGTTCGATCCCCATCAAGCCCACCA chr.trna45-ArgCCG Sc: 82.97 >>>>>>>..>>>>...........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCGAGTAGCTCAGT.GGAt.A.GAGCACCGCTCTCCTAAAGCGGGT...........GtCGTCGGTTCGAATCCGATCTCGGGCA... chr.trna36-ArgCCT Sc: 83.05 >>>>>>>..>>>>...........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<.... GGCCCCGTAGCTCAGCTGGAt.A.GAGCATGTGACTTCTAATCTCAAG...........GtCGACGGTTCGAGCCCGTCCGGGGTCACGA chr.trna49-ArgTCT Sc: 76.80Asn tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... TCCTGCGTAGCTCAGTTGGCAGAGCATCCGACTGTTAATCGGACG...........GtCACTGGTTCAAGCCCAGTCGCAGGAGCCA chr.trna56-AsnGTT Sc: 89.32 TCCTGCGTAGCTCAGTTGGCAGAGCATCCGACTGTTAATCGGACG...........GtCGCTGGTTCAAGCCCAGCCGCAGGAG... chr.trna54-AsnGTT Sc: 81.86 TCCTGCGTAGCTCAGTTGGCAGAGCATCCGACTGTTAATCGGACG...........GtCACTGGTTCAAGCCCAGTCGCAGGAG... chr.trna55-AsnGTT Sc: 81.02Asp tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<.... GGCCCCGTAGCTCAGTTGGTtAGAGCGCCGCCCTGTCACGGCGGAG...........GtCACCGGTTCAAGTCCGGCCGGGGTCGCCA chr.trna34-AspGTC Sc: 90.04 GGCCCCGTAGCTCAGTTGGTtAGAGCGCCGCCCTGTCACGGCGGAG...........GtCACCGGTTCAAGTCCGGCCGGGGTCG... chr.trna32-AspGTC Sc: 81.74Cys tRNAs
>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<.... GGTGGGTTAGCCAAGCGGTT.AGGCAGCGGCCTGCAAAGCCGTAT...........AGACGAGTTCGACTCTCGTACCCACCT... chr.trna3-CysGCA Sc: 54.73Gln tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<.<<<<<<<.... TGGGGTGTGGTGTAATTGGCA.ACACAGCTGATTCTGGTTCAGCC............AtTCTTGGTTCGAGTCCAGG.CACCCCAGCCA chr.trna42-GlnCTG Sc: 64.01 >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<.<<<<<<<.... TCCCCCATGGTGTAAT.GGCA.GCACACGGGTCTTTGGAACCCTTT...........G.TCTTGGTTCGAGTCCAGG.TGGGGGAA... chr.trna9-GlnTTG Sc: 50.35Glu tRNAs
>>>>>>>..>>>>..........<<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCATCGTCTAGCGGTctA.GGACTACGCCCTCTCACGGCGCCA...........ACACCGGTTCAAATCCGGTTGGGGGTACGA chr.trna41-GluCTC Sc: 48.46 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCCATCGTCTAACGGTt.A.GGACACCAGACTTTCAATCTGACA...........ACGAGAGTTCGACTCTCTCTGGGGGTA... chr.trna37-GluTTC Sc: 53.59Gly tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGACATAGCTTAGTTGGTA.AAGCGCAACCTTGCCAAGGTTGAG...........AcCGCGGGTTCGAGTCCCGTTGTCCGCTCCA chr.trna6-GlyGCC Sc: 84.37 GCGGACATAGCTTAGTTGGTA.AAGCGCAACCTTGCCAAGGTTGAG...........AcCGCGGGTTCGAGTCCCGTTGTCCGCTCTA chr.trna2-GlyGCC Sc: 76.69 GCGGACATAGCTTAGTTGGTA.AAGCGCAACCTTGCCAAGGTTGAG...........AcCGCGGGTTCGAGTCCCGTTGTCCGCT... chr.trna46-GlyGCC Sc: 76.07 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGACATAGTTCATC.GGTA.GAATGAAAGCTTCCCAAGCTTTAG...........A.GGCGGGTTCGACTCCCGTTGTCCGCTCCA chr.trna40-GlyCCC Sc: 63.99 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCGGATGTAGCTCAAT.GGTA.GAGCCTCAGTCTTCCAAACTGATT...........A.CGCGGGTTCGATTCCCGTCATCCGCTCCA chr.trna25-GlyTCC Sc: 79.76His tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GTGGCCATAGCTCAGTTGGTAGAGCATCTGATTGTGGTTCAGAAG...........GtCGCGCGTTCGAGCCGCGTTGGCCACCCCA chr.trna13-HisGTG Sc: 82.14Ile tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCCCGTAGCTCAGCTGGTtAGAGCGCATCCCTGATAAGGATGAG...........GtCGGAGGTTCAAGTCCTCCCGGGCCCA... chr.trna21-IleGAT Sc: 93.28Leu tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>.>.........<.<<<<...>>>>>.......<<<<<.<<<<<<<.... GCCCGGGTGGCGGAAT.GGTaG.ACGCGCTAGCTTGAGGTGCTAGT.GCCTATTTTA....TACAGGCG.TACGGGTTCAAGTCCCGT.CTCGGGCA... chr.trna8-LeuGAG Sc: 57.72 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>.............<<<<...>>>>>.......<<<<<.<<<<<<<.... GCGAGTGTGGCGGAAT.GGTaG.ACGCGCTGTCTTCAGGTGGCAGT.GAGT...GTAT......GCTCG.TGGGGGTTCAACTCCCCC.CACTCGCACCA chr.trna20-LeuCAG Sc: 58.67 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>...............<<<...>>>>>.......<<<<<.<<<<<<<.... GCGCGAGTGGCGGAATTGGTaG.ACGCGCAGGATTTAGGTTCCTGT.GTC....TTT........GACG.TGTGGGTTCAAGTCCCAT.CTCGCGCACCG chr.trna15-LeuTAG Sc: 67.07 >>>>>>>..>>>............<<<.>>>>.........<<<<..........................>>>>>.......<<<<<.<<<<<<<.... GCCCTCGTATCCCAATTGGTaG.AGGAAGCAGCCTCAAAATCTGCGC.....................AgTGTGGGTTCGAGTCCCAC.CGAGGGCA... chr.trna51-LeuCAA Sc: 48.19 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>...............<<<...>>>>>.......<<<<<.<<<<<<<.... GCCTCCGTGGCGAAAT.GGTaT.ACGCAGTCGACTTAAAATCGATC.GCTT.............CGGCT.TGTGGGTTCGAGTCCCAC.CGGAGGCACCT chr.trna50-LeuTAA Sc: 60.16Lys tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCTGTAGCTCAGTTGGTtA.GAGCAGCTGACTCTTAATCAGCGT...........GtCCAGGGTTCGAATCCCTGCGGGGGCA... chr.trna44-LysCTT Sc: 87.20 >>>>>>>..>>>>..........<<<<.>>>.>.......<.<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCTTTAGCTCAAC.GGTtA.GAGCAGCGTCCTTTTAAGTCGTGG...........GtTGTGGGTTCGAATCCCACAGGGGGCACAA chr.trna43-LysTTT Sc: 77.70Met tRNAs
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<..... CGCGGGGTGGAGCAGCTcGGT.AGCTCGCTGGGCTCATAACCCAGAG...........GtCCATGGTTCAAATCCATGCCCCGCTACCA chr.trna17-MetCAT Sc: 83.43 >>>>>>>..>>>>..........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<.... GGGGCCGTAGCTCAGTC.GGTtAGAGCATGCGACTCATAATCGCCCG...........GtCCAGGGTTCAAGCCCCTGCGGCCCCA... chr.trna35-MetCAT Sc: 81.10 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCGGGGTAGCTCAGCT.GGCtAGAGCGTACGACTCATAATCGTAAG...........GtCAAGAGTTCGAGCCTCTTCCTCGCTACAA chr.trna28-MetCAT Sc: 79.34Phe tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGCTCTGTAGCTCAGTTGGTAGAGCGAGCGACTGAAAATCGCTAG...........GtCAACGGATCGACGCCGTTCGGAGCCACCA chr.trna33-PheGAA Sc: 75.92Pro tRNAs
>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGCCGTAGCGCAGTTtGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGCGGGTTCAAATCCCGCCGGCCCGACCG chr.trna7-ProGGG Sc: 83.07 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGCTGTAGCGCAGCTtGGTAGCGCGCTTCGTTCGGGACGAAGAG...........GcCGCGGGTTCAAATCCCGCCAGCCCGACAA chr.trna38-ProCGG Sc: 80.22 >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... CGGGCTATAGCGCAGTTtGGTAGCGCGCCTGCTTTGGGAGCAGGAT...........GtCGTGGGTTCAAATCCCGCTAGCCCGACAA chr.trna12-ProTGG Sc: 84.46SeC tRNAs
Ser tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>............<.<...>>>>>.......<<<<<..<<<<<<<.... GGAGGATTCGCCTAGTGGTctA.TGGCGCACGCTTGGAAAGCGTGTTGGT...GTAAc....AGCCtCACGAGTTCGAATCTCGT..ATCCTCCGCCC chr.trna18-SerGGA Sc: 60.01 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<...>>>>>.......<<<<<..<<<<<<<.... GGATAAGTGTCCGAGCGGTctA.AGGAGCACGCCTCGAAAGCGTGTGAGGT..GAAA....GCCTC.CGCGAGTTCGAATCTCGC..CTTATCCGCCT chr.trna30-SerCGA Sc: 60.61 >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>..........<<<<...>>>>>.......<<<<<..<<<<<<<.... GGACAGGTGTCTGAGCGGCctA.AAGAGACGGTCTTGAAAACCGTTGAGGG..GCAA....CCCTC.CGCGAGTTCGAATCTCGC..CCTGTCCGCGA chr.trna31-SerTGA Sc: 63.66 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>>>......<<<<<<...>>>>>.......<<<<<..<<<<<<<.... GGAGTCATGCCTGAGTGGCcgA.TAGGGGCACCCTGCTAAGGTGTT.AGTCGTGTAA..ACGGCT..CGAGGGTTCGAATCCCTC..TGACTCCGCCG chr.trna29-SerGCT Sc: 55.64Sup tRNAs
Thr tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<.<<<<................>>>>>.......<<<<<<<<<<<<.... GCCCCGATAGCTCAGT.GGT.A.GAGCACTTCCTTGGTAAG.GAAGAG...........GtCGTGAGTCCAATTCTCACTCGGGGCT... chr.trna27-ThrGGT Sc: 74.46 >>.>.>...>>>>..........<<<<.>>>>>.......<.<<<<.................>.>>.......<<.<..<.<.<<.... GCCCCGATAGCTCAGT.GGT.A.GAGCACTTCCTTGGTAAG.GAAGAG...........GtCGTGAGTCCAATTCTGAA.CTGCGCCCCG chr.trna19-ThrGGT Sc: 36.78 Pseudo >>>>>>>..>>>>..........<<<<.>>>>>.......<.<<<<................>>>>>.......<<<<<<<<<<<<.... GCCACTTTAGCTCAGTCGGT.A.GAGCGGCTCACTCGTAAT.GAGCAG...........GtCGTCAGTTCGATTCTGACAAGTGGCT... chr.trna14-ThrCGT Sc: 79.68 GCCACCTTAGCTCAGT.GGT.A.GAGCATCCCCCTCGTTCGtGGGAAG...........GtCGGTAGTTCGATTCTATCGGGTGGCT... chr.trna16-ThrCGT Sc: 53.41 >>>>>>>..>>>>..........<<<<.>>>>>.......<.<<<<................>>>>>.......<<<<<<<<<<<<.... GCCTCTTTAGCTCAGATGGCcA.GAGCGGCCGCCTTGTAAG.CGGCAG...........GtCGTCGGTTCGATCCCGACAAGAGGCTCGA chr.trna39-ThrTGT Sc: 77.74Trp tRNAs
>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... AGGGAAGTGGCGCAATTGGTAGCGCAACGGTCTCCAAAACCGTAG...........GtTGTGGGTTCGAGTCCCGCCTTCCCTGCCA chr.trna24-TrpCCA Sc: 87.91 .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<..... ATGCGCGTAGCTCAGCTGGTAGAGCGGCGGTCTCCAAAACCGCAG...........GtCGTCGGATCGAAGCCAACCGCGCAATCCC chr.trna57-TrpCCA Sc: 54.64Tyr tRNAs
>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>.>.......<.<....>>>>>.......<<<<<<<<<<<<.... GGCGGATTTCCCAAGCGGTcaA.AGGGAGCTGACTGTAAATCAGCCGCTTC.......GTGCTtCAGTGGTTCGAATCCACTATCCGCCA... chr.trna26-TyrGTA Sc: 59.16Val tRNAs
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGGTTGGCGCAGT.GGT.A.GCGCACTTCCCTGACACGGAAGGG...........GtCACAAGTTCGAATCTTGTATCGCCCACGA chr.trna4-ValGAC Sc: 78.88 GGGCGGTTGGCGCAGT.GGT.A.GCGCACTTCCCTGACACGGAAGGG...........GtCACAAGTTCGAATCTTGTATCGCCCA... chr.trna47-ValGAC Sc: 78.26 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCGATTGGCGCAGC.GGCtA.GCGCACTTCGTTCACACCGAAGGG...........GtCGTAGGTTCGATTCCTACATCGCCCACCC chr.trna48-ValCAC Sc: 81.33 GGGCGATTGGCGCAGC.GGCtA.GCGCACTTCGTTCACACCGAAGGG...........GtCGTAGGTTCGATTCCTACATCGCCCA... chr.trna5-ValCAC Sc: 80.71 >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<.... GGGCAATTAGCTCAGTTGGTtA.GAGCGCCACCTTTACACGGTGGAT...........GtCGGGGGTTCGAGTCCCTCATTGCCCA... chr.trna1-ValTAC Sc: 88.93
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.