tRNAscan-SE Analysis of the Bdellovibrio bacteriovorus Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCCGTAGCTCAGCTGGGAGAGCGCAACGCTGGCAGTGTTGAG...........GtCGTCGGTTCGATCCCGATCGGCTCCACCA chr.trna5-AlaGGC Sc: 79.55  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGCATAGCTCAGCTGGGAGAGCATCTGATTTGCATTCAGAAG...........GtCGCAGGTTCGATCCCTGTTGCCTCCACCA chr.trna6-AlaTGC Sc: 91.87  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACTCGTAGCTCAGCTGGAtA.GAGTACATGACTACGAATCATGTG...........GtCAGAGGTTCGAATCCTCTCGAGTGCACCA chr.trna2-ArgACG Sc: 85.93  



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCAGTCGTAGTTCAAT.GGAtA.GAGCACTTGGCTTCGAACCAAGGG...........GtTGCAGGTTCGAGTCCTGCCGACTGCACCA chr.trna8-ArgTCG Sc: 84.64  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTCCGTAGCTCAGCTGGAtA.GAGCATCTCCCTTCTAAGGAGAGG...........GtCGTACGTTCGAGTCGTACCGGAATCACCA chr.trna25-ArgTCT Sc: 84.04  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCAGAAGTAGCTCAGTCGGTAGAGCAAGCGGCTGTTAACCGCTGG...........GtCGGGGGTTCGAGTCCCTCCTTCTGAGCCA chr.trna3-AsnGTT Sc: 90.26  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGTGGTAGTTAAGTTGGTtATAACGTCCGCCTGTCACGCGGAAG...........GcCGCGGGTTCGAGTCCCGTCCACCCCGCCA chr.trna9-AspGTC Sc: 88.36  



Cys tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTGATGTGGCCGAGGGGTT.AGGCTCAGCTCTGCAAAAGCTGCT...........ACAGCGGTTCAAATCCGCTCGTCACCTCCA chr.trna27-CysGCA Sc: 58.44  



Gln tRNAs



>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATCGTCAAGTTGGTAAGACAACAGATTTTGATTCTGTCA...........TtCGCAGGTTCGAGTCCTGCTACCCCATCCA chr.trna17-GlnTTG Sc: 77.79  



Glu tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GTTCCCATCGTCTAGGGGCctA.GGACACCTCCCTTTCACGGAGGAT...........ACAGGGGTTCAAATCCCCTTGGGAACGCCA chr.trna32-GluTTC Sc: 59.69  



Gly tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAGTAGCTCAGTTGAT.AGAGCGATGCCTTGCCAAGGCATAG...........GtCGCGGGTTTGAGCCCCGTCTCCCGCTCCA chr.trna13-GlyGCC Sc: 79.92  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGAATAGCTCAATTGGCtAGAGTATCTGCCTTCCAAGCAGAGG...........GtTGCGGGTTCGAGACCCGTTTCCCGCTCCA chr.trna22-GlyTCC Sc: 85.85  



His tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GTGGGTATAGCTCAGTTGGTAGAGCATCGGATTGTGATTCCGAGT...........GtCGCGGGTTCAAGCCCCGTTACTCACCCCA chr.trna11-HisGTG Sc: 82.50  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAAGTTCGAGTCTTCCCAGGCCCACCA chr.trna7-IleGAT Sc: 101.06  
GGGCCTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGG...........GtCGGAAGTTCGAGTCTTCCCAGGCCCACCA chr.trna12-IleGAT Sc: 101.06  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<...>>>>>.......<<<<<..<<<<<<<....
GCGCGGATGGTGGAATTGGTaG.ACACGTACGTTTGAGGGGCGTATGCGCA............AGCG..TGAGGGTTCAAGTCCCTC..TCCGCGCACCA chr.trna28-LeuGAG Sc: 61.68  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<...>>>>>.......<<<<<..<<<<<<<....
GCGCGGGTGGTGGAATTGGTaG.ACACGCAGGTCTCAGAAGCCTGTGGGA...GAAA.......TCCTgTGGGGGTTCAAGTCCCCC..CTCGCGCACCA chr.trna14-LeuCAG Sc: 69.09  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<...>>>>>.......<<<<<..<<<<<<<....
GCCCCGCTGGTGAAATTGGCaG.ACACGCTAGACTTAGGATCTAGTGCGCA............AGCG..TGGGGGTTCAAGTCCCTC..GCGGGGCACCA chr.trna34-LeuTAG Sc: 70.50  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>................<<...>>>>>.......<<<<<..<<<<<<<....
GCGGGTGTGGTGAAAT.GGTaG.ACACAGGAGACTCAAAATCTCCC.GC....GAAA........GCA.TGGGGGTTCAAGTCCCTC..CACCCGCACCA chr.trna30-LeuCAA Sc: 67.09  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>>........<<<<<....>>>>>.......<<<<<..<<<<<<<....
GCCCCGGTGGCGAAATCGGTaG.ACGCACAGGACTTAAAATCCTGAGCTTCGTTTAA....ACGGGCG.TGCCGGTTCAAGTCCGGC..CCGGGGCACCA chr.trna29-LeuTAA Sc: 80.98  



Lys tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTCGCTAGCTCAGCTGGTAGAGCACTTCACTTTTAATGAAGGG...........GtCGATGGTTCGAATCCATCGCGAGCCACCA chr.trna31-LysTTT Sc: 89.72  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGGGGTAGCTCAGCT.GGTtAGAGCAACGGAATCATAATCCGTAG...........GtCGGCGGTTCAAGTCCGCCTCTCACTACCA chr.trna26-MetCAT Sc: 85.88  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGTCtGGT.AGCTCGTCGGGCTCATAACCCGAAG...........GcCGTAGGTTCAAATCCTGCCCCCGCAACCA chr.trna16-MetCAT Sc: 82.32  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGGCTAGCTTAGTT.GGTtAAAGCACGGTGCTCATAACACTGGG...........AtCGGGGGTTCAAGTCCCTCGCCCCCTACCA chr.trna4-MetCAT Sc: 77.31  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCTTGGTAGCTCAGTTGGTAGAGCAGAGGACTGAAAATCCTTGT...........GtCGGCGGTTCAATTCCGTCTCAAGCCACCA chr.trna18-PheGAA Sc: 86.64  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CTGCGCGTGGCTCAGCTtGGTAGAGCACTTGCTTGGGGTGCAAGAG...........GtCGCTGGTTCAAATCCAGTCGCGCAGACCA chr.trna10-ProGGG Sc: 86.22  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGAGTAGCGCAGTCtGGTAGCGCATCTGGTTTGGGACCAGAGG...........GtCGTAGGTTCGAATCCTATCTCCCCGACCA chr.trna33-ProTGG Sc: 91.62  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTtgA.AGGCGCACGCCTGGAACGCGTGT.GTAGGTCACAA.....GCCTAC.CGAGAGTTCGAATCTCTC..TCTCTCCGCCA chr.trna35-SerGGA Sc: 69.60  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.>........<.<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGTTGGTAGAGCGGTtgA.ATACACCAGTCTTGAAAACTGGCAGCCCTTC........GCGGGGCTCGAGGGTTCGAATCCCTC..ACTCTCCGCCA chr.trna1-SerTGA Sc: 73.80  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGGTGAGTGGCtgA.AACCAAGCGTTTGCTAAATGCTC.GTACAC.CAAAa....GTGTAC.CGAGGGTTCGAATCCCTC..CCTCTCCGCCA chr.trna36-SerGCT Sc: 60.34  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCATGTAGCTCAGT.GGTA.GAGCACACCCTTGGTAAGGGTGAG...........GtCGTCGGTTCGGCTCCGATCATGGGCTCCA chr.trna23-ThrGGT Sc: 82.31  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GCTGGTTTAGCTCAATTGGTA.GAGCAGCTGATTTGTAATCAGCAG...........GtTGCGGGTTCGAGTCCCATAACCAGCTCCA chr.trna20-ThrTGT Sc: 88.22  



Trp tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
AGGGGTGTAGCTCcAGCGGTA.GAGCGAACGACTCCAAATCGTTAG...........GtCGTGGGTTCGAATCCCTCCGCCCCTGCCA chr.trna24-TrpCCA Sc: 75.41  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGGTAGGTGCCCGAGTGGCtaA.AGGGGACGGACTGTAAATCCGTTGGCTTAT....GTCTaCGAAGGTTCGAATCCTTC.CCTGCCCACCA chr.trna21-TyrGTA Sc: 68.28  



Val tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGATATAGCGTAGTTGGTAGCGCGCTTCCTTGACATGGAAGAG...........GtCACTGGTTCAAGTCCAGTTATTCGCACCA chr.trna15-ValGAC Sc: 86.13  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGAGTTAGCTCAGTTGGTAGAGCGCCACCCTTACAAGGTGGAT...........GtCGCAGGTTCGAATCCTGTACTCCCTACCA chr.trna19-ValTAC Sc: 96.62

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.