tRNAscan-SE Analysis of the Bartonella quintana Toulouse Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna1 (121934-122009)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (121967-121969)	Score: 87.36
Seq: GGGGCTATAGCTCAGTTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1295304-1295229)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1295271-1295269)	Score: 91.73
Seq: GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna23 (1176590-1176515)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1176557-1176555)	Score: 91.73
Seq: GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna42 (164300-164224)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (164266-164264)	Score: 89.63
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGGGtCAGGAGTTCGAATCTCTTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (796830-796754)	Length: 77 bp
Type: Arg	Anticodon: CCG at 35-37 (796796-796794)	Score: 89.22
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGCTGCCCTCCGAAGGCAGAGGtCACAGATTCGAATTCTGTCGGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna29 (865164-865088)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (865130-865128)	Score: 93.05
Seq: GGTCCCGTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTGGGtCACAGGTTCGAATCCTGTCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna10 (983247-983321)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (983279-983281)	Score: 90.41
Seq: TCCCCGGTAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTTGGtCGCTGGTTCGAATCCGGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (669195-669271)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (669229-669231)	Score: 87.35
Seq: GCGGGTGTAGCTCAGTTGGTtAGAGTGCTGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGCCCCGTCACTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna27 (983061-982988)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (983029-983027)	Score: 64.93
Seq: GGCCTCGTGGCGGAATGGTTACGCAGAGGACTGCAAATCCTTGTATCCCGGTTCGATTCCGGGCGAGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1223802-1223875)	Length: 74 bp
Type: Gln	Anticodon: CTG at 33-35 (1223834-1223836)	Score: 65.45
Seq: TGGGGAATAGTTTAAGGGTAGAACAACGGACTCTGACTCCGTGAATCTTGGTTCGAATCCAGGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (473911-473985)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (473943-473945)	Score: 76.64
Seq: TGGGGTATAGCCAAGCGGTAAGGCACCGGTTTTTGGTACCGGCATtCCCTGGTTCGAATCCAGGTACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (921688-921762)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (921721-921723)	Score: 72.14
Seq: GCGCCCATCGTCTAGCGGTtAGGACGCCGCCCTTTCACGGCGGAAACAGGGGTTCGATTCCCCTTGGGCGTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1535763-1535837)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1535795-1535797)	Score: 87.83
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGTGGGTTCGAATCCCATCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna31 (855787-855714)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (855755-855753)	Score: 81.40
Seq: GCGGGTATAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATATGCGGGTTCGATTCCCGCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (360936-361012)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (360970-360972)	Score: 86.32
Seq: GCGGTTGTAGCTCAGTTGGTtAGAGCGCTGGTTTGTGGCACCAGAGGtCGTAGGTTCGAATCCCACCAACCGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

chr.trna19 (1295645-1295569)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1295611-1295609)	Score: 95.39
Seq: GGGCTTGTAGCTCAGCTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1176931-1176855)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1176897-1176895)	Score: 95.39
Seq: GGGCTTGTAGCTCAGCTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1367920-1367836)	Length: 85 bp
Type: Leu	Anticodon: CAA at 35-37 (1367886-1367884)	Score: 73.37
Seq: GCGGGTGTGGTGGAACTGGTaGACGCGCCAGACTCAAAATCTGGTTCCGAGAGGAGTGTCGGTTCGAGTCCGACCACCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna14 (1160971-1161055)	Length: 85 bp
Type: Leu	Anticodon: CAG at 35-37 (1161005-1161007)	Score: 70.84
Seq: GCCCAGATGGCGGAATTGGTaGACGCGCAGGTTTCAGGTACCTGTGCCGTAAGGCGTGGAGGTTCGAGTCCTCTTTTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna6 (665057-665141)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (665091-665093)	Score: 61.85
Seq: GCGGTCGTGGCGGAAGTGGTaGACGTGCAGCGTTGAGGTCGCTGTGGGGCAACCCGTGGAAGTTCGAGTCTTCTCGACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna11 (985365-985450)	Length: 86 bp
Type: Leu	Anticodon: TAA at 35-37 (985399-985401)	Score: 74.47
Seq: GCGGATGTGATGAAATCGGTaAACATAGCAGACTTAAAATCTGCCGGTCTAAGACCtTGCGGGTTCAAGTCCCGCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna5 (620443-620525)	Length: 83 bp
Type: Leu	Anticodon: TAG at 35-37 (620477-620479)	Score: 72.86
Seq: GCGGATGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGGGAGACTGTGGGGGTTCGAGTCCCTCCATCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<....

chr.trna12 (999088-999163)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (999121-999123)	Score: 93.11
Seq: GGGTGATTAGCTCAGTCGGTAGAGCAGCTGACTCTTAATCAGCGGGtCGTGGGTTCGATTCCCTCATCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna34 (729960-729885)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (729927-729925)	Score: 96.01
Seq: GAGCGCGTAGCTCAGCTGGTAGAGCAACTGACTTTTAATCAGTAGGtCCAGGGTTCAAATCCCTGCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1291713-1291637)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1291679-1291677)	Score: 81.76
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna24 (1172999-1172923)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1172965-1172963)	Score: 81.76
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna13 (1129906-1129982)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1129940-1129942)	Score: 85.53
Seq: GGCGGAGTAGCTCAGTAGGTtAGAGCAGAGGAATCATAATCCTTGTGtCGGGGGTTCAAATCCCTCCTCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1072651-1072575)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1072617-1072615)	Score: 89.54
Seq: GGGCCTGTAGCTCAATTGGTtAGAGCCAGCGGCTCATAACCGCTTGGtTGGGGGTTCGAGTCCCTCCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna39 (344708-344633)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (344675-344673)	Score: 91.21
Seq: GCCCAGATAGCTCAGTTGGTAGAGCAGCGGACTGAAAATCCGCGTGtCCGTGGTTCGAATCCGCGTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (630460-630384)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (630426-630424)	Score: 82.24
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCACTTGACTGGGGGTCAAGGGGtCGTGGGTTCAAATCCCGCCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (865673-865597)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (865639-865637)	Score: 90.17
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCACCTGATTTGGGATCAGGGGGtCGTAGGTTCGAATCCTATCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna41 (170943-170854)	Length: 90 bp
Type: Ser	Anticodon: CGA at 35-37 (170909-170907)	Score: 80.66
Seq: GGAGAGATGGCTGAGTGGTtgAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna25 (1164015-1163925)	Length: 91 bp
Type: Ser	Anticodon: GCT at 35-37 (1163981-1163979)	Score: 70.31
Seq: GGAGAGGTGGCCGAGTGGTcgAAGGCGCTCCCCTGCTAAGGGAGTAGGGCTCAAaaGGCTCtCGAGAGTTCGAATCTCTTCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>.>......<.<<...>>>>>.......<<<<<<<<<<<<....

chr.trna2 (176397-176486)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (176431-176433)	Score: 74.44
Seq: GGAGAGGTGGCCGAGTGGTtgAAGGCGCACGCCTGGAACGCGTGTATATAGGAAACTATATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna38 (622670-622581)	Length: 90 bp
Type: Ser	Anticodon: TGA at 35-37 (622636-622634)	Score: 73.81
Seq: GGATGGGTGGCCGAGCGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCAGGAGACTGTACCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>.>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<.<<<....

chr.trna40 (336370-336295)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (336337-336335)	Score: 86.50
Seq: GCCGCATTAGCTCAGTTGGTAGAGCACATCATTCGTAATGATGGGGtCGCTGGTTCGAACCCGGCATGCGGCACCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna18 (1342282-1342208)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (1342250-1342248)	Score: 84.84
Seq: GCTGCGGTAGCTCAGTGGCAGAGCACTCCCTTGGTAAGGGAGAGGtCGAGAGTTCAATCCTCTCTCGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (770509-770584)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (770542-770544)	Score: 94.13
Seq: GCCCTTATAGCTCAGTTGGTAGAGCACCTGATTTGTAATCAGGGGGtCGGGAGTTCGAGTCTCTCTGGGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (854293-854218)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (854260-854258)	Score: 86.54
Seq: AGGGGTATAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGCAGGtCGCGGGTTCAAGCCCTGCTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna30 (855900-855817)	Length: 84 bp
Type: Tyr	Anticodon: GTA at 35-37 (855866-855864)	Score: 74.29
Seq: GGAGGGGTGCCCGAGTGGTtaAAGGGGGCGGACTGTAAATCCGTTGCGTATGCTACGTTGGTTCGAATCCAACCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>><<<...>>>>>.......<<<<<<<<<<<<....

chr.trna37 (627358-627284)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (627326-627324)	Score: 87.84
Seq: GGGCGTGTAGCTCAGCGGGAGAGCACTACGTTGACATCGTAGGGGtCACAGGTTCGATCCCTGTCACGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (669021-668946)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (668988-668986)	Score: 92.14
Seq: GGGCGATTAGCTCAGCTGGTAGAGCGCTTCGTTTACACCGAAGATGtCGGGAGTTCGAGTCTCTCATCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.