tRNAscan-SE Analysis of the Bartonella quintana Toulouse Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

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[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	1	121934	122009	Ala	GGC	0	0	87.36	69.12	18.24	Both

chr	20	1295304	1295229	Ala	TGC	0	0	91.73	79.95	11.78	Both
chr	23	1176590	1176515	Ala	TGC	0	0	91.73	79.95	11.78	Both

chr	42	164300	164224	Arg	ACG	0	0	89.63	67.47	22.16	Both

chr	33	796830	796754	Arg	CCG	0	0	89.22	60.68	28.54	Both

chr	29	865164	865088	Arg	TCT	0	0	93.05	72.18	20.87	Both

chr	10	983247	983321	Asn	GTT	0	0	90.41	68.45	21.96	Both

chr	7	669195	669271	Asp	GTC	0	0	87.35	77.60	9.75	Both

chr	27	983061	982988	Cys	GCA	0	0	64.93	37.06	27.87	Both

chr	15	1223802	1223875	Gln	CTG	0	0	65.45	38.49	26.96	Both

chr	4	473911	473985	Gln	TTG	0	0	76.64	46.24	30.40	Both

chr	9	921688	921762	Glu	TTC	0	0	72.14	48.37	23.77	Both

chr	16	1535763	1535837	Gly	GCC	0	0	87.83	68.78	19.05	Both

chr	31	855787	855714	Gly	TCC	0	0	81.40	64.64	16.76	Both

chr	3	360936	361012	His	GTG	0	0	86.32	67.16	19.16	Both

chr	19	1295645	1295569	Ile	GAT	0	0	95.39	78.44	16.95	Both
chr	22	1176931	1176855	Ile	GAT	0	0	95.39	78.44	16.95	Both

chr	17	1367920	1367836	Leu	CAA	0	0	73.37	49.63	23.74	Both

chr	14	1160971	1161055	Leu	CAG	0	0	70.84	46.03	24.81	Both

chr	6	665057	665141	Leu	GAG	0	0	61.85	26.82	35.03	Both

chr	11	985365	985450	Leu	TAA	0	0	74.47	41.13	33.34	Both

chr	5	620443	620525	Leu	TAG	0	0	72.86	53.25	19.61	Both

chr	12	999088	999163	Lys	CTT	0	0	93.11	74.97	18.14	Both

chr	34	729960	729885	Lys	TTT	0	0	96.01	69.97	26.04	Both

chr	21	1291713	1291637	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	24	1172999	1172923	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	13	1129906	1129982	Met	CAT	0	0	85.53	68.17	17.36	Both
chr	26	1072651	1072575	Met	CAT	0	0	89.54	70.26	19.28	Both

chr	39	344708	344633	Phe	GAA	0	0	91.21	67.97	23.24	Both

chr	36	630460	630384	Pro	GGG	0	0	82.24	59.32	22.92	Both

chr	28	865673	865597	Pro	TGG	0	0	90.17	65.96	24.21	Both

chr	41	170943	170854	Ser	CGA	0	0	80.66	53.78	26.88	Both

chr	25	1164015	1163925	Ser	GCT	0	0	70.31	39.58	30.73	Both

chr	2	176397	176486	Ser	GGA	0	0	74.44	46.12	28.32	Both

chr	38	622670	622581	Ser	TGA	0	0	73.81	49.23	24.58	Both

chr	40	336370	336295	Thr	CGT	0	0	86.50	66.86	19.64	Both

chr	18	1342282	1342208	Thr	GGT	0	0	84.84	61.35	23.49	Both

chr	8	770509	770584	Thr	TGT	0	0	94.13	76.84	17.29	Both

chr	32	854293	854218	Trp	CCA	0	0	86.54	67.32	19.22	Both

chr	30	855900	855817	Tyr	GTA	0	0	74.29	40.50	33.79	Both

chr	37	627358	627284	Val	GAC	0	0	87.84	65.15	22.69	Both

chr	35	669021	668946	Val	TAC	0	0	92.14	68.02	24.12	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.