tRNAscan-SE Analysis of the Bartonella henselae Houston-1 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Predicted tRNA Secondary Structures

Click on "View tRNA" buttons to view 2-D tRNA structures

chr.trna1 (131572-131647)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (131605-131607)	Score: 86.51
Seq: GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna25 (1582357-1582282)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1582324-1582322)	Score: 91.73
Seq: GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna29 (1412348-1412273)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (1412315-1412313)	Score: 91.73
Seq: GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCGTCGGTTCGATCCCGTCCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna43 (177610-177534)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (177576-177574)	Score: 89.63
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGGGtCAGGAGTTCGAATCTCTTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna9 (762476-762552)	Length: 77 bp
Type: Arg	Anticodon: CCG at 35-37 (762510-762512)	Score: 90.07
Seq: GCACCCGTAGCTCAGTTGGAtAGAGCGCTGCCCTCCGAAGGCAGAGGtCACAGATTCGAATTCTGTCGGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna35 (1045951-1045875)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1045917-1045915)	Score: 93.05
Seq: GGTCCCGTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTGGGtCACAGGTTCGAATCCTGTCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna15 (1173394-1173468)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (1173426-1173428)	Score: 90.41
Seq: TCCCCGGTAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTTGGtCGCTGGTTCGAATCCGGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna36 (1011574-1011498)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1011540-1011538)	Score: 87.35
Seq: GCGGGTGTAGCTCAGTTGGTtAGAGTGCTGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGCCCCGTCACTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna33 (1173206-1173133)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (1173174-1173172)	Score: 48.91
Seq: GGCCTCGTGCGGgAATGGTtACGCAGAGGACTGCAAATCCTTGTATCCCGGTTCGATCCCGGGCGAGGCCTCCA
Str: >>>>>>>.>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna20 (1473065-1473138)	Length: 74 bp
Type: Gln	Anticodon: CTG at 33-35 (1473097-1473099)	Score: 68.42
Seq: TGGGGAATAGTTTAATGGTAGAACAGCGGACTCTGACTCCGTCAATCTTGGTTCGAATCCAAGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna4 (536651-536725)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (536683-536685)	Score: 76.64
Seq: TGGGGTATAGCCAAGCGGTAAGGCACCGGTTTTTGGTACCGGCATtCCCTGGTTCGAATCCAGGTACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna14 (1111204-1111278)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (1111237-1111239)	Score: 69.44
Seq: GCGCCCATCGTCTAGCGGTcAGGACGCCGCCCTTTCACGGCGGAAACAGGGGTTCGATTCCCCTTGGGCGTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

chr.trna22 (1880019-1880093)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (1880051-1880053)	Score: 87.83
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGTGGGTTCGAATCCCATCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna7 (704276-704349)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (704308-704310)	Score: 81.40
Seq: GCGGGTATAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATATGCGGGTTCGATTCCCGCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna3 (442621-442697)	Length: 77 bp
Type: His	Anticodon: GTG at 35-37 (442655-442657)	Score: 86.32
Seq: GCGGTTGTAGCTCAGTTGGTtAGAGCGCTGGTTTGTGGCACCAGAGGtCGTAGGTTCGAATCCCACCAACCGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

chr.trna24 (1582769-1582693)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1582735-1582733)	Score: 96.25
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna28 (1412760-1412684)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (1412726-1412724)	Score: 96.25
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAGGTTCAAGTCCTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna23 (1682765-1682681)	Length: 85 bp
Type: Leu	Anticodon: CAA at 35-37 (1682731-1682729)	Score: 73.37
Seq: GCGGGTGTGGTGGAACTGGTaGACGCGCCAGACTCAAAATCTGGTTCCGAGAGGAGTGTCGGTTCGAGTCCGACCACCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna19 (1385637-1385721)	Length: 85 bp
Type: Leu	Anticodon: CAG at 35-37 (1385671-1385673)	Score: 69.62
Seq: GCCCAGATGGCGGAATTGGTaGACGCGCAGGTTTCAGGTACCTGTGCCGCAAGGCGTGGAGGTTCGAGTCCTCTTTTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna10 (881679-881763)	Length: 85 bp
Type: Leu	Anticodon: GAG at 35-37 (881713-881715)	Score: 70.37
Seq: GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGTGGGGCACCCCGTGGAAGTTCGAGTCTTCTCGACCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>..<<<<..>>>>>.......<<<<<<<<<<<<....

chr.trna16 (1179642-1179727)	Length: 86 bp
Type: Leu	Anticodon: TAA at 35-37 (1179676-1179678)	Score: 76.74
Seq: GCGGACGTGATGAAATCGGTaAACATAGCAGACTTAAAATCTGCCGGTCTAAGACCtTGCGGGTTCAAGTCCCGCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>...<<<...>>>>>.......<<<<<<<<<<<<....

chr.trna5 (697452-697534)	Length: 83 bp
Type: Leu	Anticodon: TAG at 35-37 (697486-697488)	Score: 74.64
Seq: GCGGATGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGCGGGAGACCGTGGGGGTTCGAGTCCCTCCATCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<....

chr.trna17 (1193048-1193123)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (1193081-1193083)	Score: 93.11
Seq: GGGTGATTAGCTCAGTCGGTAGAGCAGCTGACTCTTAATCAGCGGGtCGTGGGTTCGATTCCCTCATCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....

chr.trna11 (949280-949355)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (949313-949315)	Score: 97.14
Seq: GAGCGCGTAGCTCAGCTGGTAGAGCAACTGACTTTTAATCAGTAGGtCCAGGGTTCGAATCCCTGCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna26 (1578765-1578689)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1578731-1578729)	Score: 81.76
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna27 (1571976-1571900)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1571942-1571940)	Score: 81.76
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna30 (1408756-1408680)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1408722-1408720)	Score: 81.76
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGcCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

chr.trna18 (1348005-1348081)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1348039-1348041)	Score: 85.53
Seq: GGCGGAGTAGCTCAGTAGGTtAGAGCAGAGGAATCATAATCCTTGTGtCGGGGGTTCAAATCCCTCCTCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna32 (1269271-1269195)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1269237-1269235)	Score: 89.54
Seq: GGGCCTGTAGCTCAATTGGTtAGAGCCAGCGGCTCATAACCGCTTGGtTGGGGGTTCGAGTCCCTCCGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna40 (426188-426113)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (426155-426153)	Score: 91.21
Seq: GCCCAGATAGCTCAGTTGGTAGAGCAGCGGACTGAAAATCCGCGTGtCCGTGGTTCGAATCCGCGTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna38 (847213-847137)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (847179-847177)	Score: 83.36
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCACTTGACTGGGGGTCAAGGGGtCGTGGGTTCGAATCCCGCCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna34 (1046462-1046386)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1046428-1046426)	Score: 90.17
Seq: CGGAGCGTAGCGCAGCCtGGTAGCGCACCTGATTTGGGATCAGGGGGtCGTAGGTTCGAATCCTATCGCTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna42 (184253-184164)	Length: 90 bp
Type: Ser	Anticodon: CGA at 35-37 (184219-184217)	Score: 81.88
Seq: GGAGAGATGGCTGAGTGGTtgAAAGCACCGCACTCGAAATGCGGCATAGGGGTAACTCTATCGGGGGTTCAAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna31 (1391113-1391023)	Length: 91 bp
Type: Ser	Anticodon: GCT at 35-37 (1391079-1391077)	Score: 70.31
Seq: GGAGAGGTGGCCGAGTGGTcgAAGGCGCTCCCCTGCTAAGGGAGTAGGGCTCAAaaGGCTCtCGAGAGTTCGAATCTCTTCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>.>......<.<<...>>>>>.......<<<<<<<<<<<<....

chr.trna2 (189669-189758)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (189703-189705)	Score: 76.03
Seq: GGAGAGGTGGCCGAGTGGTtgAAGGCGCACGCCTGGAACGCGTGTATATGGGAAACCATATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna13 (1021479-1021568)	Length: 90 bp
Type: Ser	Anticodon: TGA at 35-37 (1021513-1021515)	Score: 80.78
Seq: GGAGGGGTGGCCGAGCGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCAGGAGACTGTACCGTGGGTTCGAATCCCACCCCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

chr.trna41 (359805-359730)	Length: 76 bp
Type: Thr	Anticodon: CGT at 34-36 (359772-359770)	Score: 96.55
Seq: GCCGCATTAGCTCAGTTGGTAGAGCACATCATTCGTAATGATGGGGtCGCTGGTTCGAATCCGGCATGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna21 (1651308-1651382)	Length: 75 bp
Type: Thr	Anticodon: GGT at 33-35 (1651340-1651342)	Score: 86.73
Seq: GCTGCGGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGAGAGTTCAATCCTCTCTCGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna37 (905892-905817)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (905859-905857)	Score: 94.13
Seq: GCCCTTATAGCTCAGTTGGTAGAGCACCTGATTTGTAATCAGGGGGtCGGGAGTTCGAGTCTCTCTGGGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna8 (705746-705821)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (705779-705781)	Score: 87.67
Seq: AGGGGTATAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGCAGGtCGCGGGTTCGAGCCCTGCTGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna6 (704163-704246)	Length: 84 bp
Type: Tyr	Anticodon: GTA at 35-37 (704197-704199)	Score: 74.29
Seq: GGAGGGGTGCCCGAGTGGTtaAAGGGGGCGGACTGTAAATCCGTTGCGTATGCTACGTTGGTTCGAATCCAACCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>><<<...>>>>>.......<<<<<<<<<<<<....

chr.trna39 (838962-838888)	Length: 75 bp
Type: Val	Anticodon: GAC at 33-35 (838930-838928)	Score: 86.72
Seq: GGGCGTGTAGCTCAGCGGGAGAGCACTACGTTGACATCGTAGGGGtCACAGGTTCAATCCCTGTCACGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

chr.trna12 (1011750-1011825)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1011783-1011785)	Score: 93.45
Seq: GGGCGATTAGCTCAGCTGGTAGAGCGCCTCGTTTACACCGAGGATGtCGGGAGTTCGAGTCTCTCATCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.