tRNAscan-SE Analysis of the Bartonella henselae Houston-1 Genome

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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	131572	131647	View	Ala	GGC	0	0	86.51	68.27	18.24	Both
chr	2	189669	189758	View	Ser	GGA	0	0	76.03	48.22	27.81	Both
chr	3	442621	442697	View	His	GTG	0	0	86.32	67.16	19.16	Both
chr	4	536651	536725	View	Gln	TTG	0	0	76.64	46.24	30.40	Both
chr	5	697452	697534	View	Leu	TAG	0	0	74.64	53.03	21.61	Both
chr	6	704163	704246	View	Tyr	GTA	0	0	74.29	40.50	33.79	Both
chr	7	704276	704349	View	Gly	TCC	0	0	81.40	64.64	16.76	Both
chr	8	705746	705821	View	Trp	CCA	0	0	87.67	68.45	19.22	Both
chr	9	762476	762552	View	Arg	CCG	0	0	90.07	61.53	28.54	Both
chr	10	881679	881763	View	Leu	GAG	0	0	70.37	33.81	36.56	Both
chr	11	949280	949355	View	Lys	TTT	0	0	97.14	71.10	26.04	Both
chr	12	1011750	1011825	View	Val	TAC	0	0	93.45	70.56	22.89	Both
chr	13	1021479	1021568	View	Ser	TGA	0	0	80.78	51.24	29.54	Both
chr	14	1111204	1111278	View	Glu	TTC	0	0	69.44	45.68	23.76	Both
chr	15	1173394	1173468	View	Asn	GTT	0	0	90.41	68.45	21.96	Both
chr	16	1179642	1179727	View	Leu	TAA	0	0	76.74	40.78	35.96	Both
chr	17	1193048	1193123	View	Lys	CTT	0	0	93.11	74.97	18.14	Both
chr	18	1348005	1348081	View	Met	CAT	0	0	85.53	68.17	17.36	Both
chr	19	1385637	1385721	View	Leu	CAG	0	0	69.62	44.81	24.81	Both
chr	20	1473065	1473138	View	Gln	CTG	0	0	68.42	40.08	28.34	Both
chr	21	1651308	1651382	View	Thr	GGT	0	0	86.73	63.24	23.49	Both
chr	22	1880019	1880093	View	Gly	GCC	0	0	87.83	68.78	19.05	Both
chr	23	1682765	1682681	View	Leu	CAA	0	0	73.37	49.63	23.74	Both
chr	24	1582769	1582693	View	Ile	GAT	0	0	96.25	79.30	16.95	Both
chr	25	1582357	1582282	View	Ala	TGC	0	0	91.73	79.95	11.78	Both
chr	26	1578765	1578689	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	27	1571976	1571900	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	28	1412760	1412684	View	Ile	GAT	0	0	96.25	79.30	16.95	Both
chr	29	1412348	1412273	View	Ala	TGC	0	0	91.73	79.95	11.78	Both
chr	30	1408756	1408680	View	Met	CAT	0	0	81.76	54.87	26.89	Both
chr	31	1391113	1391023	View	Ser	GCT	0	0	70.31	39.58	30.73	Both
chr	32	1269271	1269195	View	Met	CAT	0	0	89.54	70.26	19.28	Both
chr	33	1173206	1173133	View	Cys	GCA	0	0	48.91	24.88	24.03	Eufind
chr	34	1046462	1046386	View	Pro	TGG	0	0	90.17	65.96	24.21	Both
chr	35	1045951	1045875	View	Arg	TCT	0	0	93.05	72.18	20.87	Both
chr	36	1011574	1011498	View	Asp	GTC	0	0	87.35	77.60	9.75	Both
chr	37	905892	905817	View	Thr	TGT	0	0	94.13	76.84	17.29	Both
chr	38	847213	847137	View	Pro	GGG	0	0	83.36	60.44	22.92	Both
chr	39	838962	838888	View	Val	GAC	0	0	86.72	64.03	22.69	Both
chr	40	426188	426113	View	Phe	GAA	0	0	91.21	67.97	23.24	Both
chr	41	359805	359730	View	Thr	CGT	0	0	96.55	76.91	19.64	Both
chr	42	184253	184164	View	Ser	CGA	0	0	81.88	55.00	26.88	Both
chr	43	177610	177534	View	Arg	ACG	0	0	89.63	67.47	22.16	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.