tRNAscan-SE Analysis of the Bartonella henselae Houston-1 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAG...........GtCAGCGGTTCGATCCCGCTTAGCTCCACCA chr.trna1-AlaGGC Sc: 86.51  


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA chr.trna29-AlaTGC Sc: 91.73  
GGGGCCGTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGG...........GtCGTCGGTTCGATCCCGTCCGGCTCCACCA chr.trna25-AlaTGC Sc: 91.73  



Arg tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGG...........GtCAGGAGTTCGAATCTCTTCGGGTGCGCCA chr.trna43-ArgACG Sc: 89.63  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACCCGTAGCTCAGTTGGAtAGAGCGCTGCCCTCCGAAGGCAGAG...........GtCACAGATTCGAATTCTGTCGGGTGCACCA chr.trna9-ArgCCG Sc: 90.07  



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCCCGTAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTGG...........GtCACAGGTTCGAATCCTGTCGGGATCGCCA chr.trna35-ArgTCT Sc: 93.05  



Asn tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCCCCGGTAGCTCAGTGGTA.GAGCAACCGGCTGTTAACCGGTTG...........GtCGCTGGTTCGAATCCGGCCCGGGGAGCCA chr.trna15-AsnGTT Sc: 90.41  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGTTGGTtAGAGTGCTGGCCTGTCACGCCGGAG...........GtCGCGGGTTCGAGCCCCGTCACTCGCGCCA chr.trna36-AspGTC Sc: 87.35  



Cys tRNAs



>>>>>>>.>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<.<<<<<<<....
GGCCTCGTGCGGgAATGGTtA.CGCAGAGGACTGCAAATCCTTGT...........ATCCCGGTTCGATCCCGGG.CGAGGCCTCCA chr.trna33-CysGCA Sc: 48.91  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGAATAGTTTAATGGTA.GAACAGCGGACTCTGACTCCGTCA...........A.TCTTGGTTCGAATCCAAGTTCCCCAGCCA chr.trna20-GlnCTG Sc: 68.42  

>>>>>>>..>>>..........<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TGGGGTATAGCCAAGCGGTA.AGGCACCGGTTTTTGGTACCGGCA...........TtCCCTGGTTCGAATCCAGGTACCCCAGCCA chr.trna4-GlnTTG Sc: 76.64  



Glu tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GCGCCCATCGTCTAGCGGTcA.GGACGCCGCCCTTTCACGGCGGAA...........ACAGGGGTTCGATTCCCCTTGGGCGTACCA chr.trna14-GluTTC Sc: 69.44  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGGTGTAGCTCAGGGGTA.GAGCACAACCTTGCCAAGGTTGGG...........GtCGTGGGTTCGAATCCCATCGCCCGCTCCA chr.trna22-GlyGCC Sc: 87.83  


>>>>>>>..>>>>........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<<<<<<<....
GCGGGTATAGCTCAATGGTA.GAGCAGCAGCCTTCCAAGCTGAAT...........A.TGCGGGTTCGATTCCCGCTACCCGCTCCA chr.trna7-GlyTCC Sc: 81.40  



His tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GCGGTTGTAGCTCAGTTGGTtAGAGCGCTGGTTTGTGGCACCAGAG...........GtCGTAGGTTCGAATCCCACCAACCGTACCA chr.trna3-HisGTG Sc: 86.32  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA chr.trna28-IleGAT Sc: 96.25  
GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAG...........GtCGGAGGTTCAAGTCCTCCCAGGCCCACCA chr.trna24-IleGAT Sc: 96.25  




Leu tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>...........<<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGTCGTGGCGGAATTGGTaGACGCGCAGCGTTGAGGTCGCTGT.GGGGC.........ACCCCG.TGGAAGTTCGAGTCTTCT.CGACCGCACCA chr.trna10-LeuGAG Sc: 70.37  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCCCAGATGGCGGAATTGGTaGACGCGCAGGTTTCAGGTACCTGT.GCC..GCAA.......GGCG.TGGAGGTTCGAGTCCTCT.TTTGGGCACCA chr.trna19-LeuCAG Sc: 69.62  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>...............<<...>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGCGAAATTGGTaGACGCACCAGATTTAGGTTCTGGC.GGGA...........GACCG.TGGGGGTTCGAGTCCCTC.CATCCGCACCA chr.trna5-LeuTAG Sc: 74.64  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGGTGTGGTGGAACTGGTaGACGCGCCAGACTCAAAATCTGGT.TCC..GAGA.......GGAG.TGTCGGTTCGAGTCCGAC.CACCCGCACCA chr.trna23-LeuCAA Sc: 73.37  

>>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>.............<<<...>>>>>.......<<<<<.<<<<<<<....
GCGGACGTGATGAAATCGGTaAACATAGCAGACTTAAAATCTGCCGGTC..TAA........GACCtTGCGGGTTCAAGTCCCGC.CGTCCGCACCA chr.trna16-LeuTAA Sc: 76.74  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>.>>>.......<<<.<<<<<<<<....
GGGTGATTAGCTCAGTCGGTAGAGCAGCTGACTCTTAATCAGCGG...........GtCGTGGGTTCGATTCCCTCATCACCCACCA chr.trna17-LysCTT Sc: 93.11  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GAGCGCGTAGCTCAGCTGGTAGAGCAACTGACTTTTAATCAGTAG...........GtCCAGGGTTCGAATCCCTGCGCGCTCACCA chr.trna11-LysTTT Sc: 97.14  



Met tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCCTGTAGCTCAATT.GGTtAGAGCCAGCGGCTCATAACCGCTTG...........GtTGGGGGTTCGAGTCCCTCCGGGCCCACCA chr.trna32-MetCAT Sc: 89.54  
GGCGGAGTAGCTCAGTA.GGTtAGAGCAGAGGAATCATAATCCTTGT...........GtCGGGGGTTCAAATCCCTCCTCCGCTACCA chr.trna18-MetCAT Sc: 85.53  
.>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna30-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna27-MetCAT Sc: 81.76  
CGCGGGGTGGAGCAGCCcGGT.AGCTCGTCAGGCTCATAACCTGAAG...........GcCGCAGGTTCAAATCCTGCCCCCGCAACCA chr.trna26-MetCAT Sc: 81.76  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCAGATAGCTCAGTTGGTAGAGCAGCGGACTGAAAATCCGCGT...........GtCCGTGGTTCGAATCCGCGTCTGGGCACCA chr.trna40-PheGAA Sc: 91.21  



Pro tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTAGCGCAGCCtGGTAGCGCACTTGACTGGGGGTCAAGGG...........GtCGTGGGTTCGAATCCCGCCGCTCCGACCA chr.trna38-ProGGG Sc: 83.36  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAGCGTAGCGCAGCCtGGTAGCGCACCTGATTTGGGATCAGGGG...........GtCGTAGGTTCGAATCCTATCGCTCCGACCA chr.trna34-ProTGG Sc: 90.17  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTtgA.AGGCGCACGCCTGGAACGCGTGT.ATATGGGAAA...CCATAT..CGAGGGTTCGAATCCCTC..TCTCTCCGCCA chr.trna2-SerGGA Sc: 76.03  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGGCTGAGTGGTtgA.AAGCACCGCACTCGAAATGCGGC.ATAGGGGTAA...CTCTAT..CGGGGGTTCAAATCCCTC..TCTCTCCGCCA chr.trna42-SerCGA Sc: 81.88  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>.......<<<<<<...>>>>>.......<<<<<..<<<<<<<....
GGAGGGGTGGCCGAGCGGTttA.AGGCACCGGTCTTGAAAACCGGC.GTGCAGGAGA...CTGTAC..CGTGGGTTCGAATCCCAC..CCCCTCCGCCA chr.trna13-SerTGA Sc: 80.78  


>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>.>...........<.<<...>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCCGAGTGGTcgA.AGGCGCTCCCCTGCTAAGGGAGTAGGGC..TCAAaa...GGCTCtCGAGAGTTCGAATCTCTT..CCTCTCCGCCA chr.trna31-SerGCT Sc: 70.31  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGCGGTAGCTCAGT.GGTA.GAGCACTCCCTTGGTAAGGGAGAG...........GtCGAGAGTTCAATCCTCTCTCGCAGCACCA chr.trna21-ThrGGT Sc: 86.73  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCATTAGCTCAGTTGGTA.GAGCACATCATTCGTAATGATGGG...........GtCGCTGGTTCGAATCCGGCATGCGGCACCA chr.trna41-ThrCGT Sc: 96.55  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCCCTTATAGCTCAGTTGGTA.GAGCACCTGATTTGTAATCAGGGG...........GtCGGGAGTTCGAGTCTCTCTGGGGGCACCA chr.trna37-ThrTGT Sc: 94.13  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGGGGTATAGCTCAGTTGGTAGAGCGGCGGTCTCCAAAACCGCAG...........GtCGCGGGTTCGAGCCCTGCTGCCCCTGCCA chr.trna8-TrpCCA Sc: 87.67  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>.......<<<...>>>>>.......<<<<<<<<<<<<....
GGAGGGGTGCCCGAGTGGTtaA.AGGGGGCGGACTGTAAATCCGTTGCGTA.......TGCTACGTTGGTTCGAATCCAACCCCCTCCACCA chr.trna6-TyrGTA Sc: 74.29  



Val tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGTGTAGCTCAGC.GGGA.GAGCACTACGTTGACATCGTAGGG...........GtCACAGGTTCAATCCCTGTCACGCCCACCA chr.trna39-ValGAC Sc: 86.72  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGATTAGCTCAGCTGGTA.GAGCGCCTCGTTTACACCGAGGAT...........GtCGGGAGTTCGAGTCTCTCATCGCCCACCA chr.trna12-ValTAC Sc: 93.45

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.