tRNAscan-SE Analysis of the Bacteroides thetaiotaomicron VPI-5482 Genome
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| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna18 (2058727-2058803) Length: 77 bp
Type: Ala Anticodon: GGC at 35-37 (2058761-2058763) Score: 67.17
Seq: GGGGCGTTAGCTCATCTGGCtAGAGCGCGACACTGGCAGTGTCGAGGtGATCGGTTCGAGTCCGATACGCTCCACAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna31 (4985248-4985321) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (4985282-4985284) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna53 (3328623-3328550) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (3328589-3328587) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna55 (3034372-3034299) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (3034338-3034336) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna59 (2340367-2340294) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (2340333-2340331) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna62 (1629842-1629769) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (1629808-1629806) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna66 (1100108-1100035) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (1100074-1100072) Score: 54.07
Seq: GGTCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna67 (1100014-1099941) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (1099980-1099978) Score: 55.81
Seq: GGCCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna68 (1099920-1099844) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1099886-1099884) Score: 62.37
Seq: GGTCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGATCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna56 (2680689-2680617) Length: 73 bp
Type: Arg Anticodon: CCG at 34-36 (2680656-2680654) Score: 51.37
Seq: GGCCCCGTAGCTTAGTGAAtAGAGCGTCAGATTCCGGTTCTGAAGGtCGTGCGTTTGAATCGCACCGGGGTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna45 (3537646-3537572) Length: 75 bp
Type: Arg Anticodon: CCT at 34-36 (3537613-3537611) Score: 54.54
Seq: GGCCTTGTAGTTCAACGGAtAGAATAGAAGTTTCCTAAACTTTAGATAGGGGTTCGATTCCCCTCGGGGCTACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna8 (951833-951906) Length: 74 bp
Type: Arg Anticodon: TCT at 35-37 (951867-951869) Score: 75.72
Seq: GGTTCCGTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGGGtCAAGCGTTCGAATCGCTTCGGAATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna24 (3474693-3474769) Length: 77 bp
Type: Asn Anticodon: GTT at 35-37 (3474727-3474729) Score: 79.94
Seq: TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGGGtCCTTGGTTCAAGTCCAAGAGGAAGAGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna25 (3474794-3474870) Length: 77 bp
Type: Asn Anticodon: GTT at 35-37 (3474828-3474830) Score: 79.94
Seq: TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGGGtCCTTGGTTCAAGTCCAAGAGGAAGAGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna14 (1709813-1709886) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (1709847-1709849) Score: 82.22
Seq: GGTTCGGTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCGCGGGTTCGAGTCCCGTCCGGACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna15 (1709940-1710013) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (1709974-1709976) Score: 85.50
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna63 (1363804-1363731) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (1363770-1363768) Score: 85.50
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna60 (1955664-1955593) Length: 72 bp
Type: Cys Anticodon: GCA at 34-36 (1955631-1955629) Score: 51.74
Seq: GGTTCCTTGGATGAGTGGCtTAGTCAGCGGTCTGCAAAACCGTGTACGGCGGTTCGAATCCGCCAGGAACCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna34 (5222604-5222677) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (5222636-5222638) Score: 49.86
Seq: TGGGCTATGGTGTAATGGTAACACTACAGATTCTGGTCCTGTCAtTCCTGGTTCGAATCCAGGTAGCCCAACAA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna27 (4120754-4120827) Length: 74 bp
Type: Gln Anticodon: TTG at 33-35 (4120786-4120788) Score: 56.25
Seq: TGTCCTATGGTGTAATGGTAGCACAACAGTTTTTGGTTCTGTTTGTCTAAGTTCGAATCTTGGTAGGACAACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna13 (1534296-1534367) Length: 72 bp
Type: Glu Anticodon: CTC at 34-36 (1534329-1534331) Score: 56.79
Seq: GGTGGGTTCGTCTAACGGTtAGGACACATGCCTCTCACGCATGTAATACGAGTTCGATTCTCGTACCCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna44 (4420844-4420770) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (4420811-4420809) Score: 50.05
Seq: GGCCCGTTCGTCTATCGGTtAGGACGCAAGATTTTCATTCTTGAAAGGGGGGTTCGATTCCCCCACGGGCTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna64 (1163535-1163463) Length: 73 bp
Type: Gly Anticodon: CCC at 34-36 (1163502-1163500) Score: 71.50
Seq: GCGGTAGTAGCTCAGTTGGTAGAGCATTAGCTTCCCAAGCTGGGGGtCGCGAGTTCGAGCCTCGTTTACCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna2 (835573-835645) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (835606-835608) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna28 (4844016-4844088) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (4844049-4844051) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna5 (835888-835960) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (835921-835923) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna7 (836113-836188) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (836146-836148) Score: 85.15
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCTCAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna40 (5604616-5604544) Length: 73 bp
Type: Gly Anticodon: TCC at 34-36 (5604583-5604581) Score: 68.88
Seq: GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGGGtCGCGGGTTTGAGCCCCGTCTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna49 (3395313-3395241) Length: 73 bp
Type: Gly Anticodon: TCC at 34-36 (3395280-3395278) Score: 68.88
Seq: GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGGGtCGCGGGTTTGAGCCCCGTCTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna17 (1980662-1980740) Length: 79 bp
Type: His Anticodon: GTG at 36-38 (1980697-1980699) Score: 71.88
Seq: GGTGGAtGTAGTTCAGTTGGTtAGAGCGTCAGATTGTGGTTCTGAATGtCGCCGGTTCGAGTCCGGTCtTCCACCCCCA
Str: >>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<<....
chr.trna30 (4985120-4985193) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (4985154-4985156) Score: 78.06
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna52 (3328751-3328678) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (3328717-3328715) Score: 78.06
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna54 (3034500-3034427) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (3034466-3034464) Score: 78.06
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna58 (2340495-2340422) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (2340461-2340459) Score: 78.06
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna61 (1629970-1629897) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (1629936-1629934) Score: 78.06
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna46 (3448728-3448642) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (3448694-3448692) Score: 58.52
Seq: GCCCAGATGGCGGAATCGGTaGACGCGCTGGTCTCAAACACCAGTGGATTCACTTCCATCCCGGTTCGACCCCGGGTCTGGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>......<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna3 (835680-835764) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (835714-835716) Score: 51.53
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGTTTCAGGTGCGTGTGTCGAGAGGCATGCAGGTTCGAGTCCTGTTCTGGGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna6 (835993-836077) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (836027-836029) Score: 51.53
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGTTTCAGGTGCGTGTGTCGAGAGGCATGCAGGTTCGAGTCCTGTTCTGGGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna4 (835786-835869) Length: 84 bp
Type: Leu Anticodon: GAG at 35-37 (835820-835822) Score: 47.68
Seq: GGAGAGGTGGCGGAATTGGTaGACGCGCTACTTTGAGGGGGTAGTGACAGTTATGTCGTGGGAGTTCGAGTCTCCTTCTCTTCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna29 (4844103-4844189) Length: 87 bp
Type: Leu Anticodon: TAA at 34-36 (4844136-4844138) Score: 61.55
Seq: GCTCGAATGGTGGAATGGTaGACACGAAGGACTTAAAATCCTTTGGCCATTGCGGCTGTGCGGGTTCAAGTCCCGCTTCGAGTACGA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>.>..><..<.<..>>>>>.......<<<<<<<<<<<<....
chr.trna43 (4629856-4629775) Length: 82 bp
Type: Leu Anticodon: TAG at 35-37 (4629822-4629820) Score: 68.18
Seq: GCGGATGTGGCGTAATTGGTaGCCGCGCCAGACTTAGGATCTGGTGCCGTGAGGCGTGTAGGTTCGAGTCCTATCATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna10 (1016059-1016134) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (1016092-1016094) Score: 84.08
Seq: GCACTCTTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGGGtCCAGGGTTCGAATCCCTGAGGGTGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna9 (1015955-1016030) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (1015988-1015990) Score: 84.08
Seq: GCACTCTTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGGGtCCAGGGTTCGAATCCCTGAGGGTGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna11 (1483219-1483291) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (1483252-1483254) Score: 73.89
Seq: GATTCAGTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGGGtCCTGGGTTCGAGCCCCAGCTGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna20 (2857505-2857577) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (2857538-2857540) Score: 73.89
Seq: GATTCAGTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGGGtCCTGGGTTCGAGCCCCAGCTGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna42 (4890966-4890894) Length: 73 bp
Type: Met Anticodon: CAT at 34-36 (4890933-4890931) Score: 70.64
Seq: CGCGGAGTGGAGCAGTTGGTAGCTCGTTGGGCTCATAACCCAAAGGtCATTCGTTCGAGTCGGATCTCCGCAA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
chr.trna26 (3757436-3757512) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3757470-3757472) Score: 74.47
Seq: GGACTTGTAGCTCAGTTGGTtAGAGCAACAGACTCATAATCTGGAGGtCCCTGGTTCAAGCCCAGGCTGGTCCACAA
Str: >>>>>.>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<....
chr.trna21 (3020708-3020781) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (3020742-3020744) Score: 84.69
Seq: GGCGGGATAGCTCAGCTGGTtAGAGCGCATGATTCATAATCATGAGGtCCCCGGTTCAATCCCGGGTCCCGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna19 (2370156-2370231) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (2370189-2370191) Score: 82.69
Seq: GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGtCCCCGGTTCGATTCCTGGTGGCACCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
chr.trna22 (3214407-3214482) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (3214440-3214442) Score: 82.69
Seq: GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGtCCCCGGTTCGATTCCTGGTGGCACCACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
chr.trna23 (3316905-3316980) Length: 76 bp
Type: Pro Anticodon: CGG at 34-36 (3316938-3316940) Score: 75.33
Seq: CGGAATGTAGCGCAGTTGGTAGCGCACTACGTTCGGGACGTAGGGGtCGGGCGTTCGAGTCGCCTCATTCCGACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna41 (5174568-5174492) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (5174534-5174532) Score: 62.69
Seq: CGGGATGTAGCTCAGCCcGGTAGAGTACGCGTCTGGGGGGCGTGTGGtCGCAAGTTCGAATCTTGTCATCCCGACTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna69 (1041525-1041448) Length: 78 bp
Type: Pro Anticodon: TGG at 36-38 (1041490-1041488) Score: 82.39
Seq: CGGGGTGTAGCGCAGTCcGGTtAGCGCACCTGCTTTGGGAGCAGGGGGtCGTGGGTTCGAATCCCGCTACCCCGACTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna70 (1041416-1041339) Length: 78 bp
Type: Pro Anticodon: TGG at 36-38 (1041381-1041379) Score: 82.39
Seq: CGGGGTGTAGCGCAGTCcGGTtAGCGCACCTGCTTTGGGAGCAGGGGGtCGTGGGTTCGAATCCCGCTACCCCGACGA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna65 (1144760-1144682) Length: 79 bp
Type: Gly Anticodon: CCC at 37-39 (1144724-1144722) Score: 28.32
Seq: GCCGAAGGCTTTGAAGGCtttagAGAGCACTAGCTTCCCAAGCTAAGGGtCACGAGTTCGAGTCTCGCTTACCGCTCCA
Str: >>.>.>>>>>>.............<<<<..>>>>.......<<<<.......>>>>.......<<<<.<<.<.<<....
chr.trna12 (1534143-1534232) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (1534177-1534179) Score: 59.94
Seq: GGAAGTTTGGGTGAGTGGCtgAAACCACCAGTTTGCTAAACTGACGTACGGGTAACCGTACCGGGGGTTCGAATCCCCCAGCTTCCGCAA
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
chr.trna57 (2575599-2575512) Length: 88 bp
Type: Ser Anticodon: GGA at 35-37 (2575565-2575563) Score: 56.09
Seq: GGAGAGGTGCTCGAGTGGTtgAAGAGGCACGCCTGGAAAGCGTGTATACGCCAAAaGTGTATCCGGGGTTCGAATCCCCGTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna1 (111386-111473) Length: 88 bp
Type: Ser Anticodon: GGA at 35-37 (111420-111422) Score: 62.11
Seq: GGAGAGATGCTCGAGTGGTtgAAGAGGCACGCCTGGAAAGCGTGTATACGCCAAAaGTGTATCGCGGGTTCGAATCCCGCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna36 (6138247-6138331) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (6138281-6138283) Score: 48.26
Seq: GGAGAGGTGGCAGAGTGGTcgATTGCGGCGGTCTTGAAAACCGTTGTACTGCGAGGTACCCGGGGTTCGAATCCCTGTCTCTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>.><.<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna37 (6217154-6217238) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (6217188-6217190) Score: 49.67
Seq: GGAGAGGTGGCAGAGTGGTcgATTGCGGCGGTCTTGAAAACCGTTGTACCGCGAGGTACCCGGGGTTCGAATCCCTGTCTCTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna71 (520289-520217) Length: 73 bp
Type: Thr Anticodon: CGT at 34-36 (520256-520254) Score: 81.39
Seq: GCCGCTATAGCTCAGTTGGTAGAGCAACGCATTCGTAACGCGTAGGtCGCCAGTTCAAGTCTGGCTAGCGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna50 (3395228-3395157) Length: 72 bp
Type: Thr Anticodon: GGT at 33-35 (3395196-3395194) Score: 80.75
Seq: GCTGTTATAGCTCAGCGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCCCGGGTTCAAGTCCCGGTAACAGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna16 (1946747-1946820) Length: 74 bp
Type: Thr Anticodon: TGT at 35-37 (1946781-1946783) Score: 72.94
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCT
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna35 (5986401-5986474) Length: 74 bp
Type: Thr Anticodon: TGT at 35-37 (5986435-5986437) Score: 72.94
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCT
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna47 (3395656-3395580) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (3395622-3395620) Score: 81.24
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna38 (5877871-5877796) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (5877838-5877836) Score: 81.08
Seq: ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGtCGGGAGTTCGAGCCTCTCCTCCCGTGCAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna51 (3393867-3393792) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (3393834-3393832) Score: 81.08
Seq: ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGtCGGGAGTTCGAGCCTCTCCTCCCGTGCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna48 (3395424-3395339) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (3395390-3395388) Score: 63.89
Seq: GGGCAAATACCAGAGTGGCcaAATGGGGCAGACTGTAAATCTGCTGTCTTTCGACTtCGGTGGTTCGAATCCATCTTTGCCCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna39 (5604707-5604622) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (5604673-5604671) Score: 65.64
Seq: GGGCAAATACCAGAGTGGCcaAATGGGGCAGACTGTAAATCTGCTGGCTTACGCCTtCGGTGGTTCGAATCCATCTTTGCCCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna32 (5043396-5043473) Length: 78 bp
Type: Val Anticodon: TAC at 36-38 (5043431-5043433) Score: 88.00
Seq: GGGCGCTTAGCTCAGCTGGTtcAGAGCATCTGGTTTACACCCAGAGGGtCGGGGGTTCGAATCCCTCAGCGCCCACAA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna33 (5043503-5043580) Length: 78 bp
Type: Val Anticodon: TAC at 36-38 (5043538-5043540) Score: 88.00
Seq: GGGCGCTTAGCTCAGCTGGTtcAGAGCATCTGGTTTACACCCAGAGGGtCGGGGGTTCGAATCCCTCAGCGCCCACGA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.