tRNAscan-SE Analysis of the Bacteroides thetaiotaomicron VPI-5482 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
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[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by tRNA Isoacceptor Type

plain text version

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Selenocysteine] [Possible pseudogene] [Undetermined]

Sequence Name	tRNA #	tRNA Bounds		Link to Genome Browser	tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	Link to Genome Browser	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner

chr	18	2058727	2058803	View	Ala	GGC	0	0	67.17	43.51	23.66	Both

chr	31	4985248	4985321	View	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	53	3328623	3328550	View	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	55	3034372	3034299	View	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	59	2340367	2340294	View	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	62	1629842	1629769	View	Ala	TGC	0	0	84.82	69.01	15.81	Both

chr	66	1100108	1100035	View	Arg	ACG	0	0	54.07	32.34	21.73	Both
chr	67	1100014	1099941	View	Arg	ACG	0	0	55.81	35.78	20.03	Both
chr	68	1099920	1099844	View	Arg	ACG	0	0	62.37	40.61	21.76	Both

chr	56	2680689	2680617	View	Arg	CCG	0	0	51.37	24.66	26.71	Both

chr	45	3537646	3537572	View	Arg	CCT	0	0	54.54	34.52	20.02	Both

chr	8	951833	951906	View	Arg	TCT	0	0	75.72	44.85	30.87	Both

chr	24	3474693	3474769	View	Asn	GTT	0	0	79.94	46.96	32.98	Both
chr	25	3474794	3474870	View	Asn	GTT	0	0	79.94	46.96	32.98	Both

chr	14	1709813	1709886	View	Asp	GTC	0	0	82.22	62.69	19.53	Both
chr	15	1709940	1710013	View	Asp	GTC	0	0	85.50	62.18	23.32	Both
chr	63	1363804	1363731	View	Asp	GTC	0	0	85.50	62.18	23.32	Both

chr	60	1955664	1955593	View	Cys	GCA	0	0	51.74	26.29	25.45	Both

chr	34	5222604	5222677	View	Gln	CTG	0	0	49.86	22.73	27.13	Both

chr	27	4120754	4120827	View	Gln	TTG	0	0	56.25	27.77	28.48	Both

chr	13	1534296	1534367	View	Glu	CTC	0	0	56.79	29.83	26.96	Eufind

chr	44	4420844	4420770	View	Glu	TTC	0	0	50.05	25.73	24.32	Eufind

chr	64	1163535	1163463	View	Gly	CCC	0	0	71.50	59.52	11.98	Both

chr	2	835573	835645	View	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	28	4844016	4844088	View	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	5	835888	835960	View	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	7	836113	836188	View	Gly	GCC	0	0	85.15	59.08	26.07	Both

chr	40	5604616	5604544	View	Gly	TCC	0	0	68.88	53.83	15.05	Both
chr	49	3395313	3395241	View	Gly	TCC	0	0	68.88	53.83	15.05	Both

chr	17	1980662	1980740	View	His	GTG	0	0	71.88	53.67	18.21	Both

chr	30	4985120	4985193	View	Ile	GAT	0	0	78.06	49.84	28.22	Both
chr	52	3328751	3328678	View	Ile	GAT	0	0	78.06	49.84	28.22	Both
chr	54	3034500	3034427	View	Ile	GAT	0	0	78.06	49.84	28.22	Both
chr	58	2340495	2340422	View	Ile	GAT	0	0	78.06	49.84	28.22	Both
chr	61	1629970	1629897	View	Ile	GAT	0	0	78.06	49.84	28.22	Both

chr	46	3448728	3448642	View	Leu	CAA	0	0	58.52	28.24	30.28	Both

chr	3	835680	835764	View	Leu	CAG	0	0	51.53	36.20	15.33	Both
chr	6	835993	836077	View	Leu	CAG	0	0	51.53	36.20	15.33	Both

chr	4	835786	835869	View	Leu	GAG	0	0	47.68	20.84	26.84	Both

chr	29	4844103	4844189	View	Leu	TAA	0	0	61.55	36.65	24.90	Both

chr	43	4629856	4629775	View	Leu	TAG	0	0	68.18	41.41	26.77	Both

chr	10	1016059	1016134	View	Lys	CTT	0	0	84.08	61.31	22.77	Both
chr	9	1015955	1016030	View	Lys	CTT	0	0	84.08	61.31	22.77	Both

chr	11	1483219	1483291	View	Lys	TTT	0	0	73.89	44.55	29.34	Both
chr	20	2857505	2857577	View	Lys	TTT	0	0	73.89	44.55	29.34	Both

chr	42	4890966	4890894	View	Met	CAT	0	0	70.64	37.87	32.77	Both
chr	26	3757436	3757512	View	Met	CAT	0	0	74.47	63.10	11.37	Both
chr	21	3020708	3020781	View	Met	CAT	0	0	84.69	62.06	22.63	Both

chr	19	2370156	2370231	View	Phe	GAA	0	0	82.69	61.45	21.24	Both
chr	22	3214407	3214482	View	Phe	GAA	0	0	82.69	61.45	21.24	Both

chr	23	3316905	3316980	View	Pro	CGG	0	0	75.33	40.62	34.71	Both

chr	41	5174568	5174492	View	Pro	GGG	0	0	62.69	43.70	18.99	Both

chr	69	1041525	1041448	View	Pro	TGG	0	0	82.39	66.63	15.76	Both
chr	70	1041416	1041339	View	Pro	TGG	0	0	82.39	66.63	15.76	Both

chr	65	1144760	1144682	View	Pseudo	CCC	0	0	28.32	27.01	1.31	Eufind

chr	12	1534143	1534232	View	Ser	GCT	0	0	59.94	29.21	30.73	Both

chr	57	2575599	2575512	View	Ser	GGA	0	0	56.09	25.00	31.09	Both
chr	1	111386	111473	View	Ser	GGA	0	0	62.11	30.90	31.21	Both

chr	36	6138247	6138331	View	Ser	TGA	0	0	48.26	21.55	26.71	Both
chr	37	6217154	6217238	View	Ser	TGA	0	0	49.67	21.97	27.70	Both

chr	71	520289	520217	View	Thr	CGT	0	0	81.39	60.95	20.44	Both

chr	50	3395228	3395157	View	Thr	GGT	0	0	80.75	52.40	28.35	Both

chr	16	1946747	1946820	View	Thr	TGT	0	0	72.94	56.37	16.57	Both
chr	35	5986401	5986474	View	Thr	TGT	0	0	72.94	56.37	16.57	Both
chr	47	3395656	3395580	View	Thr	TGT	0	0	81.24	64.65	16.59	Both

chr	38	5877871	5877796	View	Trp	CCA	0	0	81.08	56.66	24.42	Both
chr	51	3393867	3393792	View	Trp	CCA	0	0	81.08	56.66	24.42	Both

chr	48	3395424	3395339	View	Tyr	GTA	0	0	63.89	27.09	36.80	Both
chr	39	5604707	5604622	View	Tyr	GTA	0	0	65.64	28.43	37.21	Both

chr	32	5043396	5043473	View	Val	TAC	0	0	88.00	68.58	19.42	Both
chr	33	5043503	5043580	View	Val	TAC	0	0	88.00	68.58	19.42	Both

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.