tRNAscan-SE Analysis of the Bacteroides thetaiotaomicron VPI-5482 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGCGTTAGCTCATCTGGCtAGAGCGCGACACTGGCAGTGTCGAG...........GtGATCGGTTCGAGTCCGATACGCTCCACAA chr.trna18-AlaGGC Sc: 67.17  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna62-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna59-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna55-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna53-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna31-AlaTGC Sc: 84.82  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTCGCGTAGCTCAACTGAAtA.GAGTAGCTGACTACGGATCAGCCG...........GtTACAGGTTTGAATCCTGTCGCGATCACCA chr.trna68-ArgACG Sc: 62.37  
GGCCGCGTAGCTCAACTGAAtA.GAGTAGCTGACTACGGATCAGCCG...........GtTACAGGTTTGAATCCTGTCGCGGTCA... chr.trna67-ArgACG Sc: 55.81  
GGTCGCGTAGCTCAACTGAAtA.GAGTAGCTGACTACGGATCAGCCG...........GtTACAGGTTTGAATCCTGTCGCGATCA... chr.trna66-ArgACG Sc: 54.07  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCCGTAGCTTAGT.GAAtA.GAGCGTCAGATTCCGGTTCTGAAG...........GtCGTGCGTTTGAATCGCACCGGGGTCA... chr.trna56-ArgCCG Sc: 51.37  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCTTGTAGTTCAAC.GGAtA.GAATAGAAGTTTCCTAAACTTTAG...........A.TAGGGGTTCGATTCCCCTCGGGGCTACTA chr.trna45-ArgCCT Sc: 54.54  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTCCGTAGCTCAGCTGGAtA.GAGCAACGCCCTTCTAAGGCGTGG...........GtCAAGCGTTCGAATCGCTTCGGAATCA... chr.trna8-ArgTCT Sc: 75.72  



Asn tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGG...........GtCCTTGGTTCAAGTCCAAGAGGAAGAGCAA chr.trna25-AsnGTT Sc: 79.94  
TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGG...........GtCCTTGGTTCAAGTCCAAGAGGAAGAGCAA chr.trna24-AsnGTT Sc: 79.94  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGG...........GtCACGGGTTCGAGTCCCGTACGCACCG... chr.trna63-AspGTC Sc: 85.50  
GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGG...........GtCACGGGTTCGAGTCCCGTACGCACCG... chr.trna15-AspGTC Sc: 85.50  
GGTTCGGTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGG...........GtCGCGGGTTCGAGTCCCGTCCGGACCG... chr.trna14-AspGTC Sc: 82.22  



Cys tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTTCCTTGGATGAGTGGCtT.AGTCAGCGGTCTGCAAAACCGTGT...........ACGGCGGTTCGAATCCGCCAGGAACCT... chr.trna60-CysGCA Sc: 51.74  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<.<<<<<<<....
TGGGCTATGGTGTAATGGTA.ACACTACAGATTCTGGTCCTGTC............AtTCCTGGTTCGAATCCAGG.TAGCCCAACAA chr.trna34-GlnCTG Sc: 49.86  

>>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<.<<<<<<<....
TGTCCTATGGTGTAATGGTA.GCACAACAGTTTTTGGTTCTGTTT...........G.TCTAAGTTCGAATCTTGG.TAGGACAACCA chr.trna27-GlnTTG Sc: 56.25  



Glu tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTGGGTTCGTCTAACGGTtA.GGACACATGCCTCTCACGCATGTA...........ATACGAGTTCGATTCTCGTACCCACTA... chr.trna13-GluCTC Sc: 56.79  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCGTTCGTCTATCGGTtA.GGACGCAAGATTTTCATTCTTGAA...........AGGGGGGTTCGATTCCCCCACGGGCTACAA chr.trna44-GluTTC Sc: 50.05  



Gly tRNAs



>>>>>>>..>>>>.............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<..<<<<<<<....
GCGGAAATAGCTCAGTTGGT.....AGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGT..TTTCCGCTCAA chr.trna7-GlyGCC Sc: 85.15  
GCGGAAATAGCTCAGTTGGT.....AGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGT..TTTCCGCT... chr.trna5-GlyGCC Sc: 84.53  
GCGGAAATAGCTCAGTTGGT.....AGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGT..TTTCCGCT... chr.trna28-GlyGCC Sc: 84.53  
GCGGAAATAGCTCAGTTGGT.....AGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGT..TTTCCGCT... chr.trna2-GlyGCC Sc: 84.53  

>>>>>>>..>>>>.............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<..<<<<<<<....
GCGGTAGTAGCTCAGTTGGT.....AGAGCATTAGCTTCCCAAGCTGGGG...........GtCGCGAGTTCGAGCCTCGT..TTACCGCT... chr.trna64-GlyCCC Sc: 71.50  
>>.>.>>..>>>>.............<<<<..>>>>.......<<<<..................>>>>.......<<<<...<<.<.<<....
GCCGAAG..GCTTTGAAGGCtttagAGAGCACTAGCTTCCCAAGCTAAGG...........GtCACGAGTTCGAGTCTCGC..TTACCGCTCCA chr.trna65-GlyCCC Sc: 28.32  Pseudo

>>>>>>>..>>>>.............<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<..<<<<<<<....
GCGGAAGTAGCTCAGTTGAT.....AGAGCATTAGCCTTCCAAGCTGAGG...........GtCGCGGGTTTGAGCCCCGT..CTTCCGCT... chr.trna49-GlyTCC Sc: 68.88  
GCGGAAGTAGCTCAGTTGAT.....AGAGCATTAGCCTTCCAAGCTGAGG...........GtCGCGGGTTTGAGCCCCGT..CTTCCGCT... chr.trna40-GlyTCC Sc: 68.88  



His tRNAs



>>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<<....
GGTGGAtGTAGTTCAGTTGGTtAGAGCGTCAGATTGTGGTTCTGAAT...........GtCGCCGGTTCGAGTCCGGTCtTCCACCCCCA chr.trna17-HisGTG Sc: 71.88  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTA... chr.trna61-IleGAT Sc: 78.06  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTA... chr.trna58-IleGAT Sc: 78.06  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTA... chr.trna54-IleGAT Sc: 78.06  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTA... chr.trna52-IleGAT Sc: 78.06  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTA... chr.trna30-IleGAT Sc: 78.06  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<....
GGAGAGGTGGCGGAATTGGTaG.ACGCGCTACTTTGAGGGGGTAGT.GACA..GTTA......TGTCGTGGGAGTTCGAGTCTCCT.TCTCTTCA... chr.trna4-LeuGAG Sc: 47.68  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAATTGGTaG.ACGCGCACGTTTCAGGTGCGTGT.GTC...GAGA.......GGCATGCAGGTTCGAGTCCTGT.TCTGGGCACAA chr.trna6-LeuCAG Sc: 51.53  
GCCCAGGTGGCGGAATTGGTaG.ACGCGCACGTTTCAGGTGCGTGT.GTC...GAGA.......GGCATGCAGGTTCGAGTCCTGT.TCTGGGCACAA chr.trna3-LeuCAG Sc: 51.53  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGCGTAATTGGTaG.CCGCGCCAGACTTAGGATCTGGT.GCC...GTGA.......GGCGTGTAGGTTCGAGTCCTAT.CATCCGCA... chr.trna43-LeuTAG Sc: 68.18  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGATGGCGGAATCGGTaG.ACGCGCTGGTCTCAAACACCAGT.GGAT..TCAC......TTCCATCCCGGTTCGACCCCGGG.TCTGGGTACCA chr.trna46-LeuCAA Sc: 58.52  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>..>........<..<.<..>>>>>.......<<<<<.<<<<<<<....
GCTCGAATGGTGGAAT.GGTaG.ACACGAAGGACTTAAAATCCTTTGGCCATT........GCGGCTGTGCGGGTTCAAGTCCCGC.TTCGAGTACGA chr.trna29-LeuTAA Sc: 61.55  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACTCTTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGG...........GtCCAGGGTTCGAATCCCTGAGGGTGTACAA chr.trna9-LysCTT Sc: 84.08  
GCACTCTTAGCTCAGTTGGTAGAGCAACTGACTCTTAATCAGTGG...........GtCCAGGGTTCGAATCCCTGAGGGTGTACAA chr.trna10-LysCTT Sc: 84.08  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GATTCAGTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGG...........GtCCTGGGTTCGAGCCCCAGCTGGATCA... chr.trna20-LysTTT Sc: 73.89  
GATTCAGTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGG...........GtCCTGGGTTCGAGCCCCAGCTGGATCA... chr.trna11-LysTTT Sc: 73.89  



Met tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGGATAGCTCAGCTGGTtAGAGCGCATGATTCATAATCATGAG...........GtCCCCGGTTCAATCCCGGGTCCCGCTA... chr.trna21-MetCAT Sc: 84.69  
>>>>>.>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<.<<<<<....
GGACTTGTAGCTCAGTTGGTtAGAGCAACAGACTCATAATCTGGAG...........GtCCCTGGTTCAAGCCCAGGCTGGTCCACAA chr.trna26-MetCAT Sc: 74.47  
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGAGTGGAGCAGTTGGT.AGCTCGTTGGGCTCATAACCCAAAG...........GtCATTCGTTCGAGTCGGATCTCCGCAA... chr.trna42-MetCAT Sc: 70.64  



Phe tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<<<<<<<<....
GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGT...........GtCCCCGGTTCGATTCCTGGTGGCACCACTA chr.trna22-PheGAA Sc: 82.69  
GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGT...........GtCCCCGGTTCGATTCCTGGTGGCACCACTA chr.trna19-PheGAA Sc: 82.69  



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGATGTAGCTCAGCCcGGT.AGAGTACGCGTCTGGGGGGCGTGTG...........GtCGCAAGTTCGAATCTTGTCATCCCGACTA chr.trna41-ProGGG Sc: 62.69  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAATGTAGCGCAGTT.GGT.AGCGCACTACGTTCGGGACGTAGGG...........GtCGGGCGTTCGAGTCGCCTCATTCCGACAA chr.trna23-ProCGG Sc: 75.33  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCGCAGTCcGGTtAGCGCACCTGCTTTGGGAGCAGGGG...........GtCGTGGGTTCGAATCCCGCTACCCCGACTA chr.trna69-ProTGG Sc: 82.39  
CGGGGTGTAGCGCAGTCcGGTtAGCGCACCTGCTTTGGGAGCAGGGG...........GtCGTGGGTTCGAATCCCGCTACCCCGACGA chr.trna70-ProTGG Sc: 82.39  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGCTCGAGTGGTtgA.AGAGGCACGCCTGGAAAGCGTGT.ATACGC.CAAAa....GTGTAT.CGCGGGTTCGAATCCCGC..TCTCTCCG... chr.trna1-SerGGA Sc: 62.11  
GGAGAGGTGCTCGAGTGGTtgA.AGAGGCACGCCTGGAAAGCGTGT.ATACGC.CAAAa....GTGTAT.CCGGGGTTCGAATCCCCG..TCTCTCCG... chr.trna57-SerGGA Sc: 56.09  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>.>..........<.<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.TTGCGGCGGTCTTGAAAACCGTTGTACCGC..........GAGGTACCCGGGGTTCGAATCCCTG..TCTCTCCG... chr.trna37-SerTGA Sc: 49.67  
>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>>.>........<.<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.TTGCGGCGGTCTTGAAAACCGTT.GTACTGC........GAGGTAC.CCGGGGTTCGAATCCCTG..TCTCTCCG... chr.trna36-SerTGA Sc: 48.26  


>>>>>>>..>>>............<<<..>>>>.......<<<<...>>>>>>..........<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGTTTGGGTGAGTGGCtgA.AACCACCAGTTTGCTAAACTGAC.GTACGG.GTAA.....CCGTAC.CGGGGGTTCGAATCCCCC..AGCTTCCGCAA chr.trna12-SerGCT Sc: 59.94  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGTTATAGCTCAGC.GGT.A.GAGCACTTCCTTGGTAAGGAAGAG...........GtCCCGGGTTCAAGTCCCGGTAACAGCT... chr.trna50-ThrGGT Sc: 80.75  

>>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCTATAGCTCAGTTGGT.A.GAGCAACGCATTCGTAACGCGTAG...........GtCGCCAGTTCAAGTCTGGCTAGCGGCT... chr.trna71-ThrCGT Sc: 81.39  

>>>>>>>..>>>>..........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<....
GCCTCTTTAGCTCAGTTGGCcA.GAGCACGTGATTTGTAATCTCGGG...........GtCGTTGGTTCGAATCCGACAAGAGGCTCCA chr.trna47-ThrTGT Sc: 81.24  
GCCTCTTTAGCTCAGTTGGCcA.GAGCACGTGATTTGTAATCTCGGG...........GtCGTTGGTTCGAATCCGACAAGAGGCT... chr.trna35-ThrTGT Sc: 72.94  
GCCTCTTTAGCTCAGTTGGCcA.GAGCACGTGATTTGTAATCTCGGG...........GtCGTTGGTTCGAATCCGACAAGAGGCT... chr.trna16-ThrTGT Sc: 72.94  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGT...........GtCGGGAGTTCGAGCCTCTCCTCCCGTGCTA chr.trna51-TrpCCA Sc: 81.08  
ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGT...........GtCGGGAGTTCGAGCCTCTCCTCCCGTGCAA chr.trna38-TrpCCA Sc: 81.08  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGGCAAATACCAGAGTGGCcaA.ATGGGGCAGACTGTAAATCTGCTGGCTTAC....GCCTtCGGTGGTTCGAATCCATC.TTTGCCCACAA chr.trna39-TyrGTA Sc: 65.64  
GGGCAAATACCAGAGTGGCcaA.ATGGGGCAGACTGTAAATCTGCTGTCTTTC....GACTtCGGTGGTTCGAATCCATC.TTTGCCCACAA chr.trna48-TyrGTA Sc: 63.89  



Val tRNAs





>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGCTTAGCTCAGCTGGTtcAGAGCATCTGGTTTACACCCAGAGG...........GtCGGGGGTTCGAATCCCTCAGCGCCCACGA chr.trna33-ValTAC Sc: 88.00  
GGGCGCTTAGCTCAGCTGGTtcAGAGCATCTGGTTTACACCCAGAGG...........GtCGGGGGTTCGAATCCCTCAGCGCCCACAA chr.trna32-ValTAC Sc: 88.00

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.