tRNAscan-SE Analysis of the Bacteroides fragilis YCH46 Genome
|
| Predicted tRNA Secondary Structures |
Click on "View tRNA" buttons to view 2-D tRNA structures
Cove-predicted tRNA secondary structures rendered by
NAVIEW (c) 1988 Robert E. Bruccoleri
chr.trna16 (3713658-3713731) Length: 74 bp
Type: Ala Anticodon: GGC at 35-37 (3713692-3713694) Score: 62.47
Seq: GGGGGGTTAGCTCATCTGGCtAGAGCGTAACACTGGCAGTGTTAAGGtGATCGGTTCGAGTCCGATACTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna26 (5195246-5195173) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (5195212-5195210) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna35 (4735486-4735413) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (4735452-4735450) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna37 (4676129-4676056) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (4676095-4676093) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna42 (4526710-4526637) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (4526676-4526674) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna46 (3947586-3947513) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (3947552-3947550) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna48 (3143990-3143917) Length: 74 bp
Type: Ala Anticodon: TGC at 35-37 (3143956-3143954) Score: 84.82
Seq: GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGGGtCAACGGTTCGAATCCGTTATTCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna56 (2780447-2780374) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (2780413-2780411) Score: 54.07
Seq: GGTCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna58 (2780259-2780183) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (2780225-2780223) Score: 54.69
Seq: GGTCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGATCACAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna57 (2780355-2780282) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (2780321-2780319) Score: 55.81
Seq: GGCCGCGTAGCTCAACTGAAtAGAGTAGCTGACTACGGATCAGCCGGtTACAGGTTTGAATCCTGTCGCGGTCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna43 (4350434-4350360) Length: 75 bp
Type: Arg Anticodon: CCG at 34-36 (4350401-4350399) Score: 36.35
Seq: GCTCCTGTAGTTCAACGAAtAGAATGTAGGTTTCCGGTACCTAAGATAAGGGTTTGATTCCCTTCGGGAGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna27 (5081077-5081003) Length: 75 bp
Type: Arg Anticodon: CCT at 34-36 (5081044-5081042) Score: 51.34
Seq: GGCCCTGTAGTTCAACGGAtAGAATAGATGTTTCCTAAACATTAGATAGGGGTTCGATTCTCCTCGGGGCTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna12 (2609966-2610042) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2610000-2610002) Score: 76.34
Seq: GGTTCCGTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGGGtCAAGCGTTCGAATCGCTTCGGAATCACAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna22 (4989982-4990055) Length: 74 bp
Type: Asn Anticodon: GTT at 35-37 (4990016-4990018) Score: 79.33
Seq: TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGGGtCCTTGGTTCAAGTCCAAGAGGAAGAG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna23 (4990085-4990161) Length: 77 bp
Type: Asn Anticodon: GTT at 35-37 (4990119-4990121) Score: 79.94
Seq: TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGGGtCCTTGGTTCAAGTCCAAGAGGAAGAGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna13 (3453440-3453513) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (3453474-3453476) Score: 85.50
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna11 (2410290-2410366) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2410324-2410326) Score: 86.11
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCGCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna14 (3453544-3453620) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3453578-3453580) Score: 86.11
Seq: GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGGGtCACGGGTTCGAGTCCCGTACGCACCGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna8 (1662518-1662589) Length: 72 bp
Type: Cys Anticodon: GCA at 34-36 (1662551-1662553) Score: 51.74
Seq: GGTTCCTTGGATGAGTGGCtTAGTCAGCGGTCTGCAAAACCGTGTACGGCGGTTCGAATCCGCCAGGAACCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna4 (923978-924051) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (924010-924012) Score: 47.13
Seq: TGGGCTATGGTGTAATGGTAACACTACAGATTCTGGTCCTGTCAtTTCTGGTTCGAGTCCAGATAGCCCAACAA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna1 (74043-74113) Length: 71 bp
Type: Gln Anticodon: TTG at 33-35 (74075-74077) Score: 47.95
Seq: TGTCCTATGGTGTAATGGTAGCACAACAGTTTTTGGTTCTGTTTGTCTAAGTTCGAATCTTGGTAGGACAA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<<<<<<<.
chr.trna10 (2136722-2136796) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (2136755-2136757) Score: 57.41
Seq: GGTGGGTTCGTCTAACGGTtAGGACACATGCCTCTCACGCATGTAATACGAGTTCGATTCTCGTACCCACTACTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna74 (331696-331622) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (331663-331661) Score: 50.05
Seq: GGCCCGTTCGTCTATCGGTtAGGACGCAAGATTTTCATTCTTGAAAGGGGGGTTCGATTCCCCCACGGGCTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
chr.trna55 (2858492-2858417) Length: 76 bp
Type: Gly Anticodon: CCC at 34-36 (2858459-2858457) Score: 72.47
Seq: GCGGTAGTAGCTCAGTTGGCAGAGCGGCGGCTTCCCAAGCCGCAGGtCACGAGTTCGACCCTCGCCTACCGCTCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<....
chr.trna2 (589029-589101) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (589062-589064) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna49 (2904824-2904752) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (2904791-2904789) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna54 (2904274-2904202) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (2904241-2904239) Score: 84.53
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna52 (2904501-2904426) Length: 76 bp
Type: Gly Anticodon: GCC at 34-36 (2904468-2904466) Score: 85.15
Seq: GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGGGtCGCGAGTTCGAGTCTCGTTTTCCGCTCAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna31 (4795253-4795181) Length: 73 bp
Type: Gly Anticodon: TCC at 34-36 (4795220-4795218) Score: 68.88
Seq: GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGGGtCGCGGGTTTGAGCCCCGTCTTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna67 (1157452-1157377) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (1157419-1157417) Score: 69.50
Seq: GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGGGtCGCGGGTTTGAGCCCCGTCTTCCGCTCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna15 (3655080-3655155) Length: 76 bp
Type: His Anticodon: GTG at 35-37 (3655114-3655116) Score: 69.34
Seq: GTGGCTGTAGTTCAGTTGGTtAGAGCGTCAGATTGTGGTTCTGAATGtCGTGGGTTCGAGTCCCATCTGCCACCCA
Str: >>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<...
chr.trna25 (5195351-5195275) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (5195317-5195315) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna34 (4735591-4735515) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4735557-4735555) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna36 (4676234-4676158) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4676200-4676198) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna41 (4526815-4526739) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4526781-4526779) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna45 (3947691-3947615) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (3947657-3947655) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna47 (3144095-3144019) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (3144061-3144059) Score: 86.36
Seq: AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAGGtCGGCAGTTCAACTCTGCCTGGGACTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna28 (4919485-4919402) Length: 84 bp
Type: Leu Anticodon: CAA at 35-37 (4919451-4919449) Score: 50.22
Seq: GCCCAGATGGCGGAATCGGTaGACGCGCTGGTCTCAAACACCAGTGGATTCACTTCCATCCCGGTTCGACCCCGGGTCTGGGTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>......<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna50 (2904726-2904642) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (2904692-2904690) Score: 51.53
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGTTTCAGGTGCGTGTGTCGAGAGGCATGCAGGTTCGAGTCCTGTTCTGGGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna53 (2904363-2904279) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (2904329-2904327) Score: 51.53
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCACGTTTCAGGTGCGTGTGTCGAGAGGCATGCAGGTTCGAGTCCTGTTCTGGGCACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna51 (2904607-2904524) Length: 84 bp
Type: Leu Anticodon: GAG at 35-37 (2904573-2904571) Score: 47.76
Seq: GGAGAGGTGGCGGAATTGGTaGACGCGCTACTTTGAGGGGGTAGTGACATTACTGTCGTGGGAGTTCGAGTCTCCTTCTCTTCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
chr.trna3 (589116-589199) Length: 84 bp
Type: Leu Anticodon: TAA at 34-36 (589149-589151) Score: 60.93
Seq: GCTCGAATGGTGGAATGGTaGACACGAAGGACTTAAAATCCTTTGGCCATTGCGGCTGTGCGGGTTCAAGTCCCGCTTCGAGTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>.>..><..<.<..>>>>>.......<<<<<<<<<<<<.
chr.trna73 (473498-473414) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (473464-473462) Score: 67.89
Seq: GCGGATGTGGCGTAATTGGTaGCCGCGCCAGACTTAGGATCTGGTGTCTCGCGACGTGTAGGTTCGAGTCCTATCATCCGCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>.><.<<<..>>>>>.......<<<<<<<<<<<<....
chr.trna61 (2663522-2663447) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2663489-2663487) Score: 81.92
Seq: GCACTCTTAGCTCAGCTGGTAGAGCAATTGACTCTTAATCAATGGGtCCAGGGTTCGAGTCCCTGAGGGTGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna62 (2660162-2660087) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2660129-2660127) Score: 81.92
Seq: GCACTCTTAGCTCAGCTGGTAGAGCAATTGACTCTTAATCAATGGGtCCAGGGTTCGAGTCCCTGAGGGTGTACAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna63 (2330116-2330044) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (2330083-2330081) Score: 70.05
Seq: GATTCGCTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGGGtCCTGGGTTCGAGCCCCAGGCGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna69 (770262-770190) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (770229-770227) Score: 70.05
Seq: GATTCGCTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGGGtCCTGGGTTCGAGCCCCAGGCGGATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna24 (5184390-5184463) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (5184424-5184426) Score: 73.67
Seq: GGGCTTATAGCTCAGTTGGTtAGAGCAACAGACTCATAATCTGGAGGtCCTAGGTTCAAGCCCTAGTTGGCCCA
Str: >>>>>.>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<.
chr.trna20 (4717266-4717341) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (4717299-4717301) Score: 74.39
Seq: CGCGGAGTGGAGCAGTTGGTAGCTCGTTGGGCTCATAACCCAAAGGtCGTCTGTTCGAGTCAGGCCTCCGCAACTA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
chr.trna70 (695614-695538) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (695580-695578) Score: 92.99
Seq: GGCGGGATAGCTCAGCTGGTtAGAGCGCATGATTCATAATCATGAGGtCCCCGGTTCAATCCCGGGTCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna17 (3956374-3956446) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (3956407-3956409) Score: 82.07
Seq: GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGtCCCCGGTTCGATTCCTGGTGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<.
chr.trna71 (614218-614146) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (614185-614183) Score: 82.07
Seq: GGTGCCATAGCTCAGTTGGTAGAGCAAAGGACTGAAAATCCTTGTGtCCCCGGTTCGATTCCTGGTGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<.
chr.trna72 (614133-614061) Length: 73 bp
Type: Pro Anticodon: CGG at 34-36 (614100-614098) Score: 74.71
Seq: CGGAATGTAGCGCAGTTGGTAGCGCACTACGTTCGGGACGTAGGGGtCGGGCGTTCGAGTCGCCTCATTCCGA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna68 (879366-879289) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (879331-879329) Score: 65.93
Seq: CGGGGTGTAGCTCAGCCcGGTtAGAGTACGCGTCTGGGGGGCGTGTGGtCGCTGGTTCGAATCCAGTCACCCCGACTA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna60 (2726331-2726254) Length: 78 bp
Type: Pro Anticodon: TGG at 36-38 (2726296-2726294) Score: 81.48
Seq: CGGGGTGTAGCGCAGTCcGGTtAGCGCACCAGCTTTGGGAGCTGGGGGtCGTGGGTTCGAATCCCGCTACCCCGACAA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna59 (2726442-2726365) Length: 78 bp
Type: Pro Anticodon: TGG at 36-38 (2726407-2726405) Score: 82.39
Seq: CGGGGTGTAGCGCAGTCcGGTtAGCGCACCTGCTTTGGGAGCAGGGGGtCGTGGGTTCGAATCCCGCTACCCCGACAA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna21 (4810635-4810722) Length: 88 bp
Type: Ser Anticodon: CGA at 35-37 (4810669-4810671) Score: 37.65
Seq: GGAAAGATGCCAGAGTGATcgAATGGGCCGGACTCGAAATCCGGTGAACGGCTtGTCCGTTCCGTGGGTTTGAATCCCACTCTCTCCG
Str: >>>.>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.>.<.<<<<<..>>>>>.......<<<<<<<<.<<<.
chr.trna18 (3972876-3972949) Length: 74 bp
Type: Phe Anticodon: GAA at 35-37 (3972910-3972912) Score: 24.48
Seq: GCGAGGCTTttAAAGGTcttgAGAGCAAAGGACTGAAAATCCTTGTGtCCCCGGTTCGATTCCTGGTGGCACCA
Str: >>.>.>>>>.............<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<.<<....
chr.trna9 (2136557-2136643) Length: 87 bp
Type: Ser Anticodon: GCT at 35-37 (2136591-2136593) Score: 59.32
Seq: GGAAGTTTGGGTGAGTGGCtgAAACCACCAGTTTGCTAAACTGACGTACGGGTAACCGTACCGGGGGTTCGAATCCCCCAGCTTCCG
Str: >>>>>>>..>>>...........<<<..>>>>.......<<<<..>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna44 (4249228-4249141) Length: 88 bp
Type: Ser Anticodon: GGA at 35-37 (4249194-4249192) Score: 62.11
Seq: GGAGAGATGCTCGAGTGGTtgAAGAGGCACGCCTGGAAAGCGTGTATACGCCAAAaGTGTATCGCGGGTTCGAATCCCGCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>.....<<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna7 (1584834-1584918) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (1584868-1584870) Score: 48.26
Seq: GGAGAGGTGGCAGAGTGGTcgATTGCGGCGGTCTTGAAAACCGTTGTACTGCGAGGTACCCGGGGTTCGAATCCCTGTCTCTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>.><.<<<<<.>>>>>.......<<<<<<<<<<<<.
chr.trna6 (1506263-1506350) Length: 88 bp
Type: Ser Anticodon: TGA at 35-37 (1506297-1506299) Score: 48.87
Seq: GGAGAGGTGGCAGAGTGGTcgATTGCGGCGGTCTTGAAAACCGTTGTACTGCGAGGTACCCGGGGTTCGAATCCCTGTCTCTCCGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>>>>.><.<<<<<.>>>>>.......<<<<<<<<<<<<....
chr.trna64 (1970190-1970118) Length: 73 bp
Type: Thr Anticodon: CGT at 34-36 (1970157-1970155) Score: 79.29
Seq: GCCGCTATAGCTCAGTCGGTAGAGCAACGCATTCGTAACGCGTAGGtCGCCAGTTCAAGTCTGGCTAGCGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna32 (4795170-4795099) Length: 72 bp
Type: Thr Anticodon: GGT at 33-35 (4795138-4795136) Score: 81.61
Seq: GCTGTTATAGCTCAGTGGTAGAGCACTTCCTTGGTAAGGAAGAGGtCCCGGGTTCAAATCCCGGTAACAGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna29 (4795515-4795439) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (4795481-4795479) Score: 73.56
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCTCAA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna5 (1422325-1422401) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (1422359-1422361) Score: 73.56
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCTCAA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna65 (1691024-1690948) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (1690990-1690988) Score: 73.56
Seq: GCCTCTTTAGCTCAGTTGGCcAGAGCACGTGATTTGTAATCTCGGGGtCGTTGGTTCGAATCCGACAAGAGGCTCAA
Str: >>>>>>>..>>>>.........<<<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna19 (4095270-4095342) Length: 73 bp
Type: Trp Anticodon: CCA at 34-36 (4095303-4095305) Score: 80.46
Seq: ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGtCGGGAGTTCGAGCCTCTCCTCCCGTG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna33 (4793810-4793735) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (4793777-4793775) Score: 81.08
Seq: ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGtCGGGAGTTCGAGCCTCTCCTCCCGTGCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
chr.trna66 (1157543-1157458) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (1157509-1157507) Score: 63.89
Seq: GGGCAAATACCAGAGTGGCcaAATGGGGCAGACTGTAAATCTGCTGTCTTTCGACTtCGGTGGTTCGAATCCATCTTTGCCCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna30 (4795367-4795282) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (4795333-4795331) Score: 65.64
Seq: GGGCAAATACCAGAGTGGCcaAATGGGGCAGACTGTAAATCTGCTGGCTTACGCCTtCGGTGGTTCGAATCCATCTTTGCCCACAA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
chr.trna39 (4590711-4590637) Length: 75 bp
Type: Val Anticodon: TAC at 36-38 (4590676-4590674) Score: 90.62
Seq: GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAATCCGTCAACGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna40 (4590585-4590511) Length: 75 bp
Type: Val Anticodon: TAC at 36-38 (4590550-4590548) Score: 90.62
Seq: GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAATCCGTCAACGCCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
chr.trna38 (4590815-4590738) Length: 78 bp
Type: Val Anticodon: TAC at 36-38 (4590780-4590778) Score: 91.24
Seq: GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGGGtCGGCGGTTCGAATCCGTCAACGCCCACAA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan.
Please email lowe@soe.ucsc.edu
with any questions and comments. To submit corrections, please use our
Bug and Request Tracking System.