tRNAscan-SE Analysis of the Bacteroides fragilis YCH46 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

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tRNAs Sorted by Genome Locus

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Sequence Name	tRNA #	tRNA Bounds		tRNA Isotype	Anticodon	Intron Bounds		Scores			First-Pass Scanner
Sequence Name	tRNA #	Begin	End	tRNA Isotype	Anticodon	Begin	End	Total (Cove)	HMM	2' Str	First-Pass Scanner
chr	1	74043	74113	Gln	TTG	0	0	47.95	19.50	28.45	Both
chr	2	589029	589101	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	3	589116	589199	Leu	TAA	0	0	60.93	36.05	24.88	Both
chr	4	923978	924051	Gln	CTG	0	0	47.13	18.00	29.13	Both
chr	5	1422325	1422401	Thr	TGT	0	0	73.56	56.97	16.59	Both
chr	6	1506263	1506350	Ser	TGA	0	0	48.87	22.15	26.72	Both
chr	7	1584834	1584918	Ser	TGA	0	0	48.26	21.55	26.71	Both
chr	8	1662518	1662589	Cys	GCA	0	0	51.74	26.29	25.45	Both
chr	9	2136557	2136643	Ser	GCT	0	0	59.32	28.62	30.70	Both
chr	10	2136722	2136796	Glu	CTC	0	0	57.41	30.43	26.98	Eufind
chr	11	2410290	2410366	Asp	GTC	0	0	86.11	62.77	23.34	Both
chr	12	2609966	2610042	Arg	TCT	0	0	76.34	45.45	30.89	Both
chr	13	3453440	3453513	Asp	GTC	0	0	85.50	62.18	23.32	Both
chr	14	3453544	3453620	Asp	GTC	0	0	86.11	62.77	23.34	Both
chr	15	3655080	3655155	His	GTG	0	0	69.34	56.81	12.53	Both
chr	16	3713658	3713731	Ala	GGC	0	0	62.47	41.91	20.56	Both
chr	17	3956374	3956446	Phe	GAA	0	0	82.07	60.85	21.22	Both
chr	18	3972876	3972949	Pseudo	GAA	0	0	24.48	20.77	3.71	Eufind
chr	19	4095270	4095342	Trp	CCA	0	0	80.46	56.06	24.40	Both
chr	20	4717266	4717341	Met	CAT	0	0	74.39	40.53	33.86	Both
chr	21	4810635	4810722	Pseudo	CGA	0	0	37.65	4.82	32.83	Eufind
chr	22	4989982	4990055	Asn	GTT	0	0	79.33	46.37	32.96	Both
chr	23	4990085	4990161	Asn	GTT	0	0	79.94	46.96	32.98	Both
chr	24	5184390	5184463	Met	CAT	0	0	73.67	62.53	11.14	Both
chr	25	5195351	5195275	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	26	5195246	5195173	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	27	5081077	5081003	Arg	CCT	0	0	51.34	35.79	15.55	Both
chr	28	4919485	4919402	Leu	CAA	0	0	50.22	19.96	30.26	Both
chr	29	4795515	4795439	Thr	TGT	0	0	73.56	56.97	16.59	Both
chr	30	4795367	4795282	Tyr	GTA	0	0	65.64	28.43	37.21	Both
chr	31	4795253	4795181	Gly	TCC	0	0	68.88	53.83	15.05	Both
chr	32	4795170	4795099	Thr	GGT	0	0	81.61	53.25	28.36	Both
chr	33	4793810	4793735	Trp	CCA	0	0	81.08	56.66	24.42	Both
chr	34	4735591	4735515	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	35	4735486	4735413	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	36	4676234	4676158	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	37	4676129	4676056	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	38	4590815	4590738	Val	TAC	0	0	91.24	72.11	19.13	Both
chr	39	4590711	4590637	Val	TAC	0	0	90.62	71.52	19.10	Both
chr	40	4590585	4590511	Val	TAC	0	0	90.62	71.52	19.10	Both
chr	41	4526815	4526739	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	42	4526710	4526637	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	43	4350434	4350360	Arg	CCG	0	0	36.35	11.78	24.57	Both
chr	44	4249228	4249141	Ser	GGA	0	0	62.11	30.90	31.21	Both
chr	45	3947691	3947615	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	46	3947586	3947513	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	47	3144095	3144019	Ile	GAT	0	0	86.36	58.11	28.25	Both
chr	48	3143990	3143917	Ala	TGC	0	0	84.82	69.01	15.81	Both
chr	49	2904824	2904752	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	50	2904726	2904642	Leu	CAG	0	0	51.53	36.20	15.33	Both
chr	51	2904607	2904524	Leu	GAG	0	0	47.76	22.81	24.95	Both
chr	52	2904501	2904426	Gly	GCC	0	0	85.15	59.08	26.07	Both
chr	53	2904363	2904279	Leu	CAG	0	0	51.53	36.20	15.33	Both
chr	54	2904274	2904202	Gly	GCC	0	0	84.53	58.48	26.05	Both
chr	55	2858492	2858417	Gly	CCC	0	0	72.47	52.82	19.65	Both
chr	56	2780447	2780374	Arg	ACG	0	0	54.07	32.34	21.73	Both
chr	57	2780355	2780282	Arg	ACG	0	0	55.81	35.78	20.03	Both
chr	58	2780259	2780183	Arg	ACG	0	0	54.69	32.93	21.76	Both
chr	59	2726442	2726365	Pro	TGG	0	0	82.39	66.63	15.76	Both
chr	60	2726331	2726254	Pro	TGG	0	0	81.48	64.86	16.62	Both
chr	61	2663522	2663447	Lys	CTT	0	0	81.92	57.91	24.01	Both
chr	62	2660162	2660087	Lys	CTT	0	0	81.92	57.91	24.01	Both
chr	63	2330116	2330044	Lys	TTT	0	0	70.05	36.77	33.28	Both
chr	64	1970190	1970118	Thr	CGT	0	0	79.29	58.85	20.44	Both
chr	65	1691024	1690948	Thr	TGT	0	0	73.56	56.97	16.59	Both
chr	66	1157543	1157458	Tyr	GTA	0	0	63.89	27.09	36.80	Both
chr	67	1157452	1157377	Gly	TCC	0	0	69.50	54.43	15.07	Both
chr	68	879366	879289	Pro	GGG	0	0	65.93	49.05	16.88	Both
chr	69	770262	770190	Lys	TTT	0	0	70.05	36.77	33.28	Both
chr	70	695614	695538	Met	CAT	0	0	92.99	70.34	22.65	Both
chr	71	614218	614146	Phe	GAA	0	0	82.07	60.85	21.22	Both
chr	72	614133	614061	Pro	CGG	0	0	74.71	40.02	34.69	Both
chr	73	473498	473414	Leu	TAG	0	0	67.89	42.03	25.86	Both
chr	74	331696	331622	Glu	TTC	0	0	50.05	25.73	24.32	Eufind

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.