tRNAscan-SE Analysis of the Bacteroides fragilis YCH46 Genome

[Main Overview] [Secondary Structures]	[Analysis Notes]
[tRNAs by Isotype] [tRNAs by Locus]	[Run Options/Stats]
[tRNA Alignments][FASTA Seqs]	[Genome DB] [Genome Seq]

[BLAST] [Download] [Bugs/Requests] [Citation] [Legend]

[GtRNAdb Home] [tRNAscan-SE Server] [Lowe Lab] [Other Links]

Structurally Aligned tRNAs (by Isotype & Anticodon)

[Ala] [Arg] [Asn] [Asp] [Cys] [Gln] [Glu] [Gly] [His] [Ile] [Leu] [Lys] [Met] [Phe] [Pro] [Ser] [Thr] [Trp] [Tyr] [Val]
[Suppressor] [Selenocysteine]



Ala tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGGTTAGCTCATCTGGCtAGAGCGTAACACTGGCAGTGTTAAG...........GtGATCGGTTCGAGTCCGATACTCTCCA... chr.trna16-AlaGGC Sc: 62.47  


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna48-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna46-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna42-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna37-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna35-AlaTGC Sc: 84.82  
GGGGGATTAGCTCAGCTGGCtAGAGCATCTGCCTTGCACGCAGAGG...........GtCAACGGTTCGAATCCGTTATTCTCCA... chr.trna26-AlaTGC Sc: 84.82  



Arg tRNAs


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCGCGTAGCTCAACTGAAtA.GAGTAGCTGACTACGGATCAGCCG...........GtTACAGGTTTGAATCCTGTCGCGGTCA... chr.trna57-ArgACG Sc: 55.81  
GGTCGCGTAGCTCAACTGAAtA.GAGTAGCTGACTACGGATCAGCCG...........GtTACAGGTTTGAATCCTGTCGCGATCACAA chr.trna58-ArgACG Sc: 54.69  
GGTCGCGTAGCTCAACTGAAtA.GAGTAGCTGACTACGGATCAGCCG...........GtTACAGGTTTGAATCCTGTCGCGATCA... chr.trna56-ArgACG Sc: 54.07  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTCCTGTAGTTCAAC.GAAtA.GAATGTAGGTTTCCGGTACCTAAG...........A.TAAGGGTTTGATTCCCTTCGGGAGTACAA chr.trna43-ArgCCG Sc: 36.35  


>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCCCTGTAGTTCAAC.GGAtA.GAATAGATGTTTCCTAAACATTAG...........A.TAGGGGTTCGATTCTCCTCGGGGCTACAA chr.trna27-ArgCCT Sc: 51.34  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTTCCGTAGCTCAGCTGGAtA.GAGCAACGCCCTTCTAAGGCGTGG...........GtCAAGCGTTCGAATCGCTTCGGAATCACAA chr.trna12-ArgTCT Sc: 76.34  



Asn tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGG...........GtCCTTGGTTCAAGTCCAAGAGGAAGAGCAA chr.trna23-AsnGTT Sc: 79.94  
TCTTCCTTAGCTCAGTCGGTtAGAGCATCTGACTGTTAATCAGAGG...........GtCCTTGGTTCAAGTCCAAGAGGAAGAG... chr.trna22-AsnGTT Sc: 79.33  



Asp tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGG...........GtCACGGGTTCGAGTCCCGTACGCACCGCGA chr.trna11-AspGTC Sc: 86.11  
GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGG...........GtCACGGGTTCGAGTCCCGTACGCACCGCAA chr.trna14-AspGTC Sc: 86.11  
GGTGCGTTAGTTCAGTTGGTtAGAATACATGCCTGTCACGCATGGG...........GtCACGGGTTCGAGTCCCGTACGCACCG... chr.trna13-AspGTC Sc: 85.50  



Cys tRNAs



>>>>>>>..>>>...........<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTTCCTTGGATGAGTGGCtT.AGTCAGCGGTCTGCAAAACCGTGT...........ACGGCGGTTCGAATCCGCCAGGAACCT... chr.trna8-CysGCA Sc: 51.74  



Gln tRNAs


>>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<.<<<<<<<....
TGGGCTATGGTGTAATGGTA.ACACTACAGATTCTGGTCCTGTC............AtTTCTGGTTCGAGTCCAGA.TAGCCCAACAA chr.trna4-GlnCTG Sc: 47.13  

>>>>>>>..>>>>........<<<<.>>>>.........<<<<................>>>>>.......<<<<<.<<<<<<<....
TGTCCTATGGTGTAATGGTA.GCACAACAGTTTTTGGTTCTGTTT...........G.TCTAAGTTCGAATCTTGG.TAGGACAA... chr.trna1-GlnTTG Sc: 47.95  



Glu tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGTGGGTTCGTCTAACGGTtA.GGACACATGCCTCTCACGCATGTA...........ATACGAGTTCGATTCTCGTACCCACTACTA chr.trna10-GluCTC Sc: 57.41  

>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<...............>>>>>.......<<<<<<<<<<<<....
GGCCCGTTCGTCTATCGGTtA.GGACGCAAGATTTTCATTCTTGAA...........AGGGGGGTTCGATTCCCCCACGGGCTACAA chr.trna74-GluTTC Sc: 50.05  



Gly tRNAs



>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGTTTTCCGCTCAA chr.trna52-GlyGCC Sc: 85.15  
GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGTTTTCCGCT... chr.trna54-GlyGCC Sc: 84.53  
GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGTTTTCCGCT... chr.trna49-GlyGCC Sc: 84.53  
GCGGAAATAGCTCAGTTGGTAGAGCATAACCTTGCCAAGGTTAGG...........GtCGCGAGTTCGAGTCTCGTTTTCCGCT... chr.trna2-GlyGCC Sc: 84.53  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.................>>>>.......<<<<.<<<<<<<....
GCGGTAGTAGCTCAGTTGGCAGAGCGGCGGCTTCCCAAGCCGCAG...........GtCACGAGTTCGACCCTCGCCTACCGCTCTA chr.trna55-GlyCCC Sc: 72.47  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGG...........GtCGCGGGTTTGAGCCCCGTCTTCCGCTCTA chr.trna67-GlyTCC Sc: 69.50  
GCGGAAGTAGCTCAGTTGATAGAGCATTAGCCTTCCAAGCTGAGG...........GtCGCGGGTTTGAGCCCCGTCTTCCGCT... chr.trna31-GlyTCC Sc: 68.88  



His tRNAs



>>>>>.>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<.<<<<<....
GTGGCTGTAGTTCAGTTGGTtAGAGCGTCAGATTGTGGTTCTGAAT...........GtCGTGGGTTCGAGTCCCATCTGCCAC.CCA chr.trna15-HisGTG Sc: 69.34  



Ile tRNAs



>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTACCA chr.trna47-IleGAT Sc: 86.36  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTACCA chr.trna45-IleGAT Sc: 86.36  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTACCA chr.trna41-IleGAT Sc: 86.36  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTACCA chr.trna36-IleGAT Sc: 86.36  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTACCA chr.trna34-IleGAT Sc: 86.36  
AGTCCTATAGCTCAGTTGGTtAGAGCGCTACACTGATAATGTAGAG...........GtCGGCAGTTCAACTCTGCCTGGGACTACCA chr.trna25-IleGAT Sc: 86.36  




Leu tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>............<<<<..>>>>>.......<<<<<.<<<<<<<....
GGAGAGGTGGCGGAATTGGTaG.ACGCGCTACTTTGAGGGGGTAGT.GACA..TTAC......TGTCGTGGGAGTTCGAGTCTCCT.TCTCTTCA... chr.trna51-LeuGAG Sc: 47.76  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGGTGGCGGAATTGGTaG.ACGCGCACGTTTCAGGTGCGTGT.GTC...GAGA.......GGCATGCAGGTTCGAGTCCTGT.TCTGGGCACTA chr.trna53-LeuCAG Sc: 51.53  
GCCCAGGTGGCGGAATTGGTaG.ACGCGCACGTTTCAGGTGCGTGT.GTC...GAGA.......GGCATGCAGGTTCGAGTCCTGT.TCTGGGCACAA chr.trna50-LeuCAG Sc: 51.53  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>.>..........<.<<<..>>>>>.......<<<<<.<<<<<<<....
GCGGATGTGGCGTAATTGGTaG.CCGCGCCAGACTTAGGATCTGGT.GTCTC..........GCGACGTGTAGGTTCGAGTCCTAT.CATCCGCACAA chr.trna73-LeuTAG Sc: 67.89  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>..............<<<..>>>>>.......<<<<<.<<<<<<<....
GCCCAGATGGCGGAATCGGTaG.ACGCGCTGGTCTCAAACACCAGT.GGAT..TCAC......TTCCATCCCGGTTCGACCCCGGG.TCTGGGTA... chr.trna28-LeuCAA Sc: 50.22  

>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>.>..>........<..<.<..>>>>>.......<<<<<.<<<<<<<....
GCTCGAATGGTGGAAT.GGTaG.ACACGAAGGACTTAAAATCCTTTGGCCATT........GCGGCTGTGCGGGTTCAAGTCCCGC.TTCGAGTA... chr.trna3-LeuTAA Sc: 60.93  



Lys tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCACTCTTAGCTCAGCTGGTAGAGCAATTGACTCTTAATCAATGG...........GtCCAGGGTTCGAGTCCCTGAGGGTGTACAA chr.trna62-LysCTT Sc: 81.92  
GCACTCTTAGCTCAGCTGGTAGAGCAATTGACTCTTAATCAATGG...........GtCCAGGGTTCGAGTCCCTGAGGGTGTACAA chr.trna61-LysCTT Sc: 81.92  

>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GATTCGCTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGG...........GtCCTGGGTTCGAGCCCCAGGCGGATCA... chr.trna69-LysTTT Sc: 70.05  
GATTCGCTAGCTCAGCAGGTAGAGCACAACACTTTTAATGTTGGG...........GtCCTGGGTTCGAGCCCCAGGCGGATCA... chr.trna63-LysTTT Sc: 70.05  



Met tRNAs


>>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGCGGGATAGCTCAGCTGGTtAGAGCGCATGATTCATAATCATGAG...........GtCCCCGGTTCAATCCCGGGTCCCGCTACCA chr.trna70-MetCAT Sc: 92.99  
.>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<.....
CGCGGAGTGGAGCAGTTGGT.AGCTCGTTGGGCTCATAACCCAAAG...........GtCGTCTGTTCGAGTCAGGCCTCCGCAACTA chr.trna20-MetCAT Sc: 74.39  
>>>>>.>..>>>>.........<<<<..>>>>.......<<<<.................>>>>>.......<<<<<<.<<<<<....
GGGCTTATAGCTCAGTTGGTtAGAGCAACAGACTCATAATCTGGAG...........GtCCTAGGTTCAAGCCCTAGTTGGCCCA... chr.trna24-MetCAT Sc: 73.67  



Phe tRNAs



>>>>>>>..>>>>...............<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<.<<<<<<<....
GGTGCCATAGCTC..AGTTGGT....A.GAGCAAAGGACTGAAAATCCTTGT...........GtCCCCGGTTCGATTCCTGG.TGGCACCA... chr.trna71-PheGAA Sc: 82.07  
GGTGCCATAGCTC..AGTTGGT....A.GAGCAAAGGACTGAAAATCCTTGT...........GtCCCCGGTTCGATTCCTGG.TGGCACCA... chr.trna17-PheGAA Sc: 82.07  
>>.>.....>>>>...............<<<<.>>>>>.......<<<<<................>>.>>.......<<.<<....<.<<....
GCGA....GGCTTttAAA.GGTcttgA.GAGCAAAGGACTGAAAATCCTTGT...........GtCCCCGGTTCGATTCCTGG....TGGCACCA chr.trna18-PheGAA Sc: 24.48  Pseudo



Pro tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCTCAGCCcGGTtAGAGTACGCGTCTGGGGGGCGTGTG...........GtCGCTGGTTCGAATCCAGTCACCCCGACTA chr.trna68-ProGGG Sc: 65.93  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGAATGTAGCGCAGTT.GGT.AGCGCACTACGTTCGGGACGTAGGG...........GtCGGGCGTTCGAGTCGCCTCATTCCGA... chr.trna72-ProCGG Sc: 74.71  

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
CGGGGTGTAGCGCAGTCcGGTtAGCGCACCTGCTTTGGGAGCAGGGG...........GtCGTGGGTTCGAATCCCGCTACCCCGACAA chr.trna59-ProTGG Sc: 82.39  
CGGGGTGTAGCGCAGTCcGGTtAGCGCACCAGCTTTGGGAGCTGGGG...........GtCGTGGGTTCGAATCCCGCTACCCCGACAA chr.trna60-ProTGG Sc: 81.48  



SeC tRNAs





Ser tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>>...........<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGATGCTCGAGTGGTtgA.AGAGGCACGCCTGGAAAGCGTGT.ATACGC.CAAAa.....GTGTAT.CGCGGGTTCGAATCCCGC..TCTCTCCG... chr.trna44-SerGGA Sc: 62.11  

>>>.>>>..>>>............<<<.>>>>>.......<<<<<..>>>>>.>.........<.<<<<<..>>>>>.......<<<<<..<<<.<<<....
GGAAAGATGCCAGAGTGATcgA.ATGGGCCGGACTCGAAATCCGGTGAACGGCT....t....GTCCGTTCCGTGGGTTTGAATCCCAC..TCTCTCCG... chr.trna21-SerCGA Sc: 37.65  Pseudo

>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<..>>>>>.>.........<.<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAGAGGTGGCAGAGTGGTcgA.TTGCGGCGGTCTTGAAAACCGTT.GTACTGC.........GAGGTAC.CCGGGGTTCGAATCCCTG..TCTCTCCGCAA chr.trna6-SerTGA Sc: 48.87  
GGAGAGGTGGCAGAGTGGTcgA.TTGCGGCGGTCTTGAAAACCGTT.GTACTGC.........GAGGTAC.CCGGGGTTCGAATCCCTG..TCTCTCCG... chr.trna7-SerTGA Sc: 48.26  


>>>>>>>..>>>............<<<..>>>>.......<<<<...>>>>>>...........<<<<<<..>>>>>.......<<<<<..<<<<<<<....
GGAAGTTTGGGTGAGTGGCtgA.AACCACCAGTTTGCTAAACTGAC.GTACGG.GTAA......CCGTAC.CGGGGGTTCGAATCCCCC..AGCTTCCG... chr.trna9-SerGCT Sc: 59.32  



Sup tRNAs






Thr tRNAs



>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GCTGTTATAGCTCAGT.GGT.A.GAGCACTTCCTTGGTAAGGAAGAG...........GtCCCGGGTTCAAATCCCGGTAACAGCT... chr.trna32-ThrGGT Sc: 81.61  

>>>>>>>..>>>>..........<<<<.>>>>.........<<<<................>>>>>.......<<<<<<<<<<<<....
GCCGCTATAGCTCAGTCGGT.A.GAGCAACGCATTCGTAACGCGTAG...........GtCGCCAGTTCAAGTCTGGCTAGCGGCT... chr.trna64-ThrCGT Sc: 79.29  

>>>>>>>..>>>>..........<<<<.>>.>>.......<<.<<................>>>>>.......<<<<<<<<<<<<....
GCCTCTTTAGCTCAGTTGGCcA.GAGCACGTGATTTGTAATCTCGGG...........GtCGTTGGTTCGAATCCGACAAGAGGCTCAA chr.trna65-ThrTGT Sc: 73.56  
GCCTCTTTAGCTCAGTTGGCcA.GAGCACGTGATTTGTAATCTCGGG...........GtCGTTGGTTCGAATCCGACAAGAGGCTCAA chr.trna5-ThrTGT Sc: 73.56  
GCCTCTTTAGCTCAGTTGGCcA.GAGCACGTGATTTGTAATCTCGGG...........GtCGTTGGTTCGAATCCGACAAGAGGCTCAA chr.trna29-ThrTGT Sc: 73.56  



Trp tRNAs


>>>>>>>..>>>>........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGT...........GtCGGGAGTTCGAGCCTCTCCTCCCGTGCTA chr.trna33-TrpCCA Sc: 81.08  
ACGGGAGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGT...........GtCGGGAGTTCGAGCCTCTCCTCCCGTG... chr.trna19-TrpCCA Sc: 80.46  



Tyr tRNAs



>>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>........<<<...>>>>>.......<<<<<.<<<<<<<....
GGGCAAATACCAGAGTGGCcaA.ATGGGGCAGACTGTAAATCTGCTGGCTTAC....GCCTtCGGTGGTTCGAATCCATC.TTTGCCCACAA chr.trna30-TyrGTA Sc: 65.64  
GGGCAAATACCAGAGTGGCcaA.ATGGGGCAGACTGTAAATCTGCTGTCTTTC....GACTtCGGTGGTTCGAATCCATC.TTTGCCCACAA chr.trna66-TyrGTA Sc: 63.89  



Val tRNAs





>>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<................>>>>>.......<<<<<<<<<<<<....
GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGAATCCGTCAACGCCCACAA chr.trna38-ValTAC Sc: 91.24  
GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGAATCCGTCAACGCCCA... chr.trna40-ValTAC Sc: 90.62  
GGGCGTTTAGCTCAGCTGGTtcAGAGCATCTGCCTTACAAGCAGAGG...........GtCGGCGGTTCGAATCCGTCAACGCCCA... chr.trna39-ValTAC Sc: 90.62

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.